ERR4828807
|
Pre-XDR-TB
|
lineage4.1.2
|
None
|
ERR2307455
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173213
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4872286
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR4800089
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR16088493
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829926
|
XDR-TB
|
lineage4.8
|
it
|
SAMN02585974
|
Pre-XDR-TB
|
lineage4.1.1.1
|
za
|
SRR20969645
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR3105731
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR7361971
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2515333
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR10379898
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR671726
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR688021
|
Pre-XDR-TB
|
lineage3.1
|
None
|
ERR8665934
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5709816
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
SRR24256031
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR2024911
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR1180201
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR11082134
|
Other
|
lineage4.2.1.1
|
None
|
SAMN02360603
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR21732085
|
Other
|
lineage3
|
None
|
SRR13232682
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207135
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13583449
|
HR-TB
|
lineage4.3.3
|
None
|
ERR9992853
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR4831539
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR14807583
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25389418
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992733
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR13232787
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156744
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR14519149
|
Other
|
lineage2.2.1
|
None
|
ERR9992789
|
XDR-TB
|
lineage4.4.1.1
|
None
|
SRR7592389
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR611416
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866395
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866394
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830025
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12420362
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR671756
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4799408
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR13232695
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21277683
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827756
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911414
|
Pre-XDR-TB
|
lineage2.2.1
|
us
|
SRR1169039
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR16087913
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4822556
|
XDR-TB
|
lineage2.2.1
|
ua
|
ERR9992885
|
Pre-XDR-TB
|
lineage4.3.2.1
|
None
|
ERR2307386
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15722984
|
Other
|
lineage4.5
|
None
|
ERR11798547
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232509
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR22137421
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15369022
|
Other
|
lineage2.2.1
|
None
|
SRR5341275
|
HR-TB
|
lineage4.2.2
|
in
|
ERR4796371
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2600450
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1184020
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR21277280
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4972527
|
Pre-XDR-TB
|
lineage4.1.4
|
None
|
ERR8975746
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR789235
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5865974
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3082106
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4810477
|
Pre-XDR-TB
|
lineage2.2.2
|
cn
|
SRR22137432
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22175244
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10748573
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4024563
|
Other
|
lineage4.1.2.1
|
None
|
SRR15369051
|
Other
|
lineage2.2.1.1
|
None
|
SRR13232572
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6256965
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873497
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR9224974
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
SRR13423594
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9807015
|
HR-TB
|
lineage4.4.1.1
|
None
|
ERR108420
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR23086710
|
XDR-TB
|
lineage4.8
|
None
|
SRR24466786
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR20969542
|
Other
|
lineage4.4.2
|
None
|
ERR4812705
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
SRR10040152
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5817477
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
SRR22137422
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799900
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25389506
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR14802053
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15723122
|
Other
|
lineage4.5
|
None
|
ERR4796817
|
Pre-XDR-TB
|
lineage3
|
in
|
SRR7517690
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR978257
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864050
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6484941
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865034
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1013649
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR14164459
|
Other
|
lineage4.3.3
|
None
|
ERR4831489
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR10828199
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4811317
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR23861770
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665935
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2307436
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2515867
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR23861765
|
Other
|
lineage4.8
|
None
|
SRR18715041
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
ERR8665740
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7069851
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR3743484
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR18715117
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6824371
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4799468
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR9993141
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR7585420
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR1035100
|
Pre-XDR-TB
|
lineage2.2.1.1
|
vn
|
DRR130164
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865374
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11044474
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665617
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4829865
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR3743477
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR11241400
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR25389501
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25389508
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1144807
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025646
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR24710115
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798393
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR6280342
|
Other
|
lineage2.2.1
|
cn
|
SRR1162725
|
Pre-XDR-TB
|
lineage3
|
None
|
DRR473740
|
Other
|
lineage2.2.1
|
None
|
ERR11044053
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1165330
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5979497
|
Other
|
lineage4.1.2.1
|
None
|
SRR25515577
|
Other
|
lineage2.2.1
|
None
|
ERR789234
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR1035080
|
Pre-XDR-TB
|
lineage4.7
|
za
|
SRR25515656
|
Other
|
lineage2.2.1
|
None
|
SRR20969870
|
Other
|
lineage2.2.1.1;lineage4.4.2
|
None
|
ERR4829530
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR5758378
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4828787
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829621
|
XDR-TB
|
lineage4.8
|
None
|
SAMN02419555
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
ERR10748141
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR4830885
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6362905
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR25207113
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1011518
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR25207103
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR11972447
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4796506
|
Pre-XDR-TB
|
lineage3.1.2.1
|
in
|
ERR2307695
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865041
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865376
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25206971
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR978256
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4796890
|
Pre-XDR-TB
|
lineage3
|
in
|
SRR24710054
|
HR-TB
|
lineage2.2.1
|
None
|
SRR5341213
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR10380125
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829412
|
XDR-TB
|
lineage4.8
|
it
|
SRR16103904
|
Other
|
lineage3
|
None
|
SRR6458401
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232684
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1144771
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR3085301
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR14801403
|
HR-TB
|
lineage4.2.1
|
None
|
SRR1165593
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR5865036
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7646025
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172044
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1011521
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR1062930
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR8665551
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207124
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2600419
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025634
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR25207381
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665777
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4011943
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR14807534
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR8665552
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1034783
|
Pre-XDR-TB
|
lineage4.1.2.1
|
pe
|
ERR9992928
|
XDR-TB
|
lineage1.2.2.2
|
None
|
ERR4799909
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1049730
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR9992732
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR25827486
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911673
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR4830056
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801314
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6397749
|
Other
|
lineage2.2.1
|
ca
|
ERR8975412
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR1163001
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR6397371
|
Other
|
lineage2.2.1
|
ca
|
SRR13232688
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798665
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5864973
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21764257
|
Other
|
lineage4.9
|
None
|
ERR4831484
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR25207090
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR3639767
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829866
|
Pre-XDR-TB
|
lineage4.8
|
it
|
ERR4799137
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR8025481
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR6052021
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8665662
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1166324
|
Pre-XDR-TB
|
lineage4.1.2.1
|
ro
|
SAMN02398698
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR25827565
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
ERR9993047
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173267
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR24256298
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5987230
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR16088333
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9993144
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR16156678
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1019163
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR11243548
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232488
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831576
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13312541
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3639717
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4799368
|
HR-TB
|
lineage1.1.2
|
None
|
ERR2184515
|
Other
|
lineage4.8
|
pe
|
ERR7911148
|
Pre-XDR-TB
|
lineage2.2.1
|
vn
|
SRR13312543
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829568
|
XDR-TB
|
lineage4.8
|
it
|
SRR7755760
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR27107274
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR8665755
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24709992
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02350487
|
Pre-XDR-TB
|
lineage4.1.1.1
|
za
|
SRR13232567
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6879046
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR14782654
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR25389502
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7068914
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR16156722
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR3743408
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR671815
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR7162981
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25515371
|
HR-TB
|
lineage2.2.1
|
None
|
SRR847780
|
Pre-XDR-TB
|
lineage4.3.4.2.1
|
za
|
ERR4800424
|
Pre-XDR-TB
|
lineage4.1.2.1
|
in
|
SRR13312540
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799196
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR25340814
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
SRR23938625
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827475
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5710012
|
Pre-XDR-TB
|
lineage2.2.1.2
|
th
|
ERR688023
|
Pre-XDR-TB
|
lineage3.1
|
None
|
SAMN02419624
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
SRR21738910
|
Other
|
lineage2.2.1.1
|
None
|
SRR25827375
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
ERR4831533
|
HR-TB
|
lineage4.4.1.1
|
None
|
SRR7131203
|
Other
|
lineage4.4.1.1
|
None
|
ERR4798668
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10305650
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22424879
|
Pre-XDR-TB
|
lineage3.1.2.1
|
None
|
SRR22251651
|
Other
|
lineage4.4.1.1
|
None
|
SRR6458395
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7755719
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR688025
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR1013625
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SAMN02381040
|
Pre-XDR-TB
|
lineage4
|
ug
|
SRR13312542
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5152908
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797560
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR11798702
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR8665691
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797069
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1181326
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR1173687
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10040549
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4799493
|
Pre-XDR-TB
|
lineage3
|
in
|
SRR1049019
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4799398
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR9120169
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5709862
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
SRR18715487
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25628575
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR11567786
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02414857
|
Pre-XDR-TB
|
lineage3
|
se
|
SRR22175218
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25515018
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665838
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799059
|
Pre-XDR-TB
|
lineage4.1.2.1
|
in
|
ERR6052113
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9992677
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11798720
|
XDR-TB
|
lineage4.2.1
|
None
|
SAMN02585971
|
Pre-XDR-TB
|
lineage4.1.1.1
|
za
|
ERR2515802
|
Pre-XDR-TB
|
lineage1.2.2.2
|
za
|
SRR13355776
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872294
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR2184323
|
Other
|
lineage4.3.3
|
pe
|
SRR8352463
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12062500
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799747
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR13232737
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8976114
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR21747019
|
XDR-TB
|
lineage2.2.1
|
None
|
SAMN02360593
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR4798941
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4011940
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR22175242
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5709799
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
ERR11067182
|
Other
|
lineage3
|
None
|
ERR2510822
|
Other
|
lineage4.4.1.1
|
it
|
ERR8975656
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR4811562
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR10379987
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR1873436
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR2513221
|
Pre-XDR-TB
|
lineage4
|
gb
|
ERR4831544
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR14781875
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR5866024
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8975848
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1013626
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9992756
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR7655788
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16370425
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10430401
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799117
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR108455
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR13282527
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12062499
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.4.2
|
None
|
SRR26159064
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR12072602
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1723596
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156725
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR8665504
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10040423
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9806643
|
HR-TB
|
lineage2.2.2
|
None
|
SRR18715414
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10379995
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SAMN02414862
|
Pre-XDR-TB
|
lineage3
|
se
|
ERR4800554
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
in
|
SRR23310905
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR16156749
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR8665661
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5987440
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4011941
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR23086717
|
XDR-TB
|
lineage4.8
|
None
|
SRR22137473
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799222
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797553
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827313
|
XDR-TB
|
lineage3;lineage4.8
|
None
|
SRR24256185
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
ERR4829192
|
Other
|
lineage4.4.1.1
|
None
|
SRR1166714
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4797363
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4798427
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR158609
|
Pre-XDR-TB
|
lineage2.2.1.1
|
gb
|
SRR1162898
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR13232711
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7592342
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR4813909
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR5864370
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1873433
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR4457799
|
Other
|
lineage4.1.2.1
|
None
|
ERR1768641
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827458
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR10877897
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662720
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2307741
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12268408
|
HR-TB
|
lineage4.3.4.2
|
None
|
SRR11662297
|
HR-TB
|
lineage2.2.1.1
|
None
|
SRR16370514
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458436
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR22137457
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796597
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR2024914
|
Pre-XDR-TB
|
lineage4.2.2
|
cn
|
SRR5341325
|
HR-TB
|
lineage3
|
in
|
ERR10748088
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159377
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5864971
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550619
|
Pre-XDR-TB
|
lineage4.1.1.3
|
sz
|
ERR4800321
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799508
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4810862
|
Other
|
lineage4.5
|
cn
|
ERR4799635
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR13870404
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR22175248
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR1146282
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4798402
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798736
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR5865038
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10869245
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR2516846
|
Pre-XDR-TB
|
lineage2.2.1.1
|
gb
|
SRR1723735
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156754
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR4800381
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR26159039
|
HR-TB
|
lineage2.2.1.1
|
None
|
SRR1049045
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SAMN03246463
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR25340907
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
ERR7911415
|
Pre-XDR-TB
|
lineage2.2.1
|
us
|
SRR9971237
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4797113
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR2024905
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR10869498
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR26112318
|
Other
|
lineage3
|
None
|
ERR1035083
|
Pre-XDR-TB
|
lineage4.7
|
za
|
SRR7517820
|
Other
|
lineage2.2.1
|
None
|
ERR4798868
|
Pre-XDR-TB
|
lineage2.2.1;lineage4
|
in
|
ERR10762405
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11043958
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21887764
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025438
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9121709
|
Other
|
lineage4.8
|
None
|
ERR4829761
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR4830918
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR10397223
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156712
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10112850
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR14802023
|
HR-TB
|
lineage4.2.1
|
None
|
SRR15506907
|
HR-TB
|
lineage2.2.1
|
None
|
SRR16088067
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866483
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1034786
|
Pre-XDR-TB
|
lineage4.3.2
|
pe
|
ERR1873495
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR18714971
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
ERR4799001
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4810476
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4796481
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16156758
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR4799879
|
Other
|
lineage3.1.2
|
in
|
SRR22873608
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7162985
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800634
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR3544728
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6824636
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR5864975
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7765062
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR14782252
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665754
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813180
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
pe
|
ERR4796383
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR9992897
|
XDR-TB
|
lineage1.2.2.2
|
None
|
SRR22137461
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798617
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4827552
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6879042
|
Pre-XDR-TB
|
lineage4.3.2
|
None
|
SRR6856071
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR1035105
|
Other
|
lineage4.5
|
vn
|
SRR1019192
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR5894886
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1049044
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10854752
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813129
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10808491
|
Other
|
lineage4.8
|
None
|
ERR11067750
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25389507
|
Pre-XDR-TB
|
lineage2.2.1;lineage2.2.2
|
None
|
ERR4011939
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR551692
|
Pre-XDR-TB
|
lineage4.1.1.3
|
sz
|
ERR9120170
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025447
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11243547
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992636
|
Pre-XDR-TB
|
lineage4.3.2.1
|
None
|
ERR9992892
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR8665778
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7516291
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865039
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22137411
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831499
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR1181173
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR5865035
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3086341
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR5758328
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5865037
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02403492
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR1163363
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR8975889
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR552692
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24222954
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10040368
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
SRR25827438
|
XDR-TB
|
lineage4.8
|
None
|
SRR16156705
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11243549
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3014592
|
Pre-XDR-TB
|
lineage4.6.1.2
|
None
|
ERR3287345
|
Pre-XDR-TB
|
lineage4.1.2.1
|
pe
|
ERR4829791
|
XDR-TB
|
lineage4.8
|
None
|
ERR9993143
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR4423176
|
Pre-XDR-TB
|
lineage1.1.3.1
|
None
|
ERR4800690
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8025637
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4799592
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR4798775
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798762
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1180425
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR789238
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR2510671
|
Pre-XDR-TB
|
lineage4.1.2.1
|
it
|
SRR18715255
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798685
|
XDR-TB
|
lineage3.1.2
|
in
|
SRR10380098
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR2020087
|
HR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR22137426
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21277718
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR6485041
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4830602
|
Pre-XDR-TB
|
lineage4.2.1
|
tm
|
ERR8665690
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797068
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2515419
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR6052034
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR25389417
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665741
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR688049
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4800561
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4813097
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4798457
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4810539
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4827958
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR15316372
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796894
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR7911218
|
Pre-XDR-TB
|
lineage2.2.1
|
md
|
ERR4797674
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR2307399
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13423565
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02586067
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
SRR7646028
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864371
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9993039
|
Pre-XDR-TB
|
lineage4.3.2.1
|
None
|
ERR4810976
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR5709900
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
ERR2307694
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23082915
|
Other
|
lineage4.9
|
None
|
ERR4799471
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1181300
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR16088463
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3085250
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR9907755
|
Pre-XDR-TB
|
lineage4.8.1
|
None
|
SRR8186768
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162537
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR1193842
|
Pre-XDR-TB
|
lineage4.3
|
iq
|
ERR5864065
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232503
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829107
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4800420
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830136
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24710199
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4800347
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR26937013
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2512993
|
HR-TB
|
lineage3
|
gb
|
SRR1180436
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR8025462
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR7829587
|
Pre-XDR-TB
|
lineage4.1.2
|
None
|
ERR5865033
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829371
|
Pre-XDR-TB
|
lineage4.8
|
it
|
SRR25827393
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801884
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR16156728
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR25206877
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351398
|
XDR-TB
|
lineage4.2.1
|
None
|
SRR28498389
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28044936
|
XDR-TB
|
lineage3
|
None
|
SRR28045020
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR28706402
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045263
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351283
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
SRR28351582
|
XDR-TB
|
lineage3
|
None
|
ERR12796611
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351209
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR11773841
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR11773712
|
HR-TB
|
lineage4.8
|
None
|
SRR28706641
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351324
|
Pre-XDR-TB
|
lineage3;lineage4.4.1.2
|
None
|
SRR28351615
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28046131
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28044935
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR1034585
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR1034589
|
Pre-XDR-TB
|
lineage3.1
|
pk
|
ERR1034593
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR1034591
|
Pre-XDR-TB
|
lineage3.1
|
pk
|
ERR1034603
|
Pre-XDR-TB
|
lineage4.1.1.3
|
pk
|
ERR1034617
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR2510298
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR2510328
|
Other
|
lineage3
|
pk
|
ERR5897103
|
XDR-TB
|
lineage4.8
|
None
|
SRR8651662
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8651596
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR8651617
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR18715045
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799529
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR8380043
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21657439
|
Other
|
lineage2.2.1.1
|
None
|
SRR10306000
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510827
|
Pre-XDR-TB
|
lineage4.1.2.1
|
it
|
SRR1165503
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR10808704
|
Other
|
lineage4.3.3
|
None
|
SRR3086404
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR8186769
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25515360
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR6964604
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR1175439
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR26399881
|
HR-TB
|
lineage2.2.1.1
|
None
|
SRR5486881
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR688017
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR18897164
|
Other
|
lineage3
|
None
|
SRR1180200
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR23086709
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR5987410
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR16156721
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5864049
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR137243
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR5758321
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4799229
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798099
|
HR-TB
|
lineage4.9
|
None
|
ERR4872278
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR18002967
|
HR-TB
|
lineage2.2.1
|
None
|
SRR833219
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR2510683
|
Pre-XDR-TB
|
lineage4.1.2
|
it
|
SRR16370591
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR1181115
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR10040443
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25389503
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21887740
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782317
|
HR-TB
|
lineage4.2.1
|
None
|
SRR10303354
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864051
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22137420
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865040
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11972371
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181131
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4831542
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR2515474
|
Pre-XDR-TB
|
lineage4.1.1.3
|
za
|
SRR8649108
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SAMN02585968
|
Pre-XDR-TB
|
lineage4.1.1.1
|
za
|
SRR833216
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR10380234
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3085321
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR2516514
|
Pre-XDR-TB
|
lineage4.1.2
|
pe
|
ERR5987262
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR3287853
|
Pre-XDR-TB
|
lineage4.3.2
|
pe
|
SRR22175191
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992935
|
XDR-TB
|
lineage1.2.2.2
|
None
|
SRR1181071
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR19315458
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR6650238
|
Other
|
lineage1.1.3.1
|
None
|
ERR4800303
|
Pre-XDR-TB
|
lineage4.1.2.1
|
in
|
SRR25207091
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25206982
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR789239
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6458423
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4011938
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4829770
|
HR-TB
|
lineage4.3.1
|
None
|
SAMN01925689
|
Pre-XDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR9992981
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR20969426
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR8025731
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10040354
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232570
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24709934
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3273130
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
ERR4798914
|
Pre-XDR-TB
|
lineage4.1.2.1
|
in
|
SRR6930899
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4809330
|
XDR-TB
|
lineage2.2.2
|
za
|
SRR1140739
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR8665616
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR1035331
|
Pre-XDR-TB
|
lineage4.3.3
|
br
|
ERR4798902
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796261
|
Pre-XDR-TB
|
lineage4.3.3
|
in
|
ERR4800162
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827838
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR688035
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR2510826
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SAMN02419572
|
Pre-XDR-TB
|
lineage4.3.3
|
by
|
ERR2514106
|
Pre-XDR-TB
|
lineage3
|
gb
|
ERR11067544
|
Other
|
lineage3.1
|
None
|
ERR4799937
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1181354
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR4798912
|
Pre-XDR-TB
|
lineage4.1.2.1
|
in
|
ERR5865377
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7646001
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798251
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR144611
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR2653100
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR2510844
|
Pre-XDR-TB
|
lineage4.1.2.1
|
it
|
ERR4800425
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR6280265
|
Other
|
lineage4.4.2
|
cn
|
ERR4798436
|
Pre-XDR-TB
|
lineage1.2.2.2
|
in
|
ERR4798511
|
Pre-XDR-TB
|
lineage4.8
|
in
|
ERR4011116
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR6257014
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23086728
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4831451
|
Pre-XDR-TB
|
lineage3
|
None
|
SAMN02403525
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR2653114
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR4830650
|
Pre-XDR-TB
|
lineage4.2.1
|
tm
|
ERR9993067
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR28351316
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR28351217
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR28045022
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR28351214
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR11773763
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR27069374
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11773768
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045251
|
Pre-XDR-TB
|
lineage3.1.2.1
|
None
|
SRR28045261
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351187
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR28351240
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR28351581
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR28044450
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12860984
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28393319
|
HR-TB
|
lineage4
|
None
|
SRR28389850
|
Other
|
lineage4.1.1.3
|
None
|
SRR28351505
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28923837
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510365
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR2510498
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR2510549
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR2510550
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR2179832
|
Other
|
lineage4.4.2
|
cn
|
SRR6280345
|
Other
|
lineage2.2.1
|
cn
|
ERR3148169
|
XDR-TB
|
lineage4.1.2.1
|
mx
|
ERR4799062
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR10112882
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9993100
|
XDR-TB
|
lineage3
|
None
|
ERR5863988
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831541
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR4799415
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1183131
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR9992660
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22137415
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864974
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207392
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827656
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1723734
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516427
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
ERR4796456
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1165306
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR10762446
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR2512802
|
HR-TB
|
lineage3
|
gb
|
SRR7898220
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR23086704
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR9992948
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR13232546
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662434
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9224916
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR8665615
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR9992691
|
XDR-TB
|
lineage4.8
|
None
|
DRR130203
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25389554
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR25827700
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4800064
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR24710109
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2653105
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR1394278
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829880
|
Pre-XDR-TB
|
lineage4.8
|
it
|
SRR1011522
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR9993191
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR3086372
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR25389499
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162998
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4011942
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
ERR4829648
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR11068468
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4811155
|
Pre-XDR-TB
|
lineage4.5
|
cn
|
ERR4798327
|
Pre-XDR-TB
|
lineage3.1.2.1
|
in
|
SRR16168839
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5758348
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873397
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4896317
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR25827820
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.2.2
|
None
|
SRR13232489
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1181142
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
SRR10869132
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4800332
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5864372
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798037
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR20969615
|
Other
|
lineage2.2.1.1;lineage4.4.2
|
None
|
ERR4829854
|
Pre-XDR-TB
|
lineage4.8
|
it
|
ERR9807042
|
Pre-XDR-TB
|
lineage4.7
|
None
|
ERR4796820
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR9806961
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22137446
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799219
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR1159290
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5866025
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2600418
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800335
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR9992714
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR10610084
|
HR-TB
|
lineage2.2.2
|
None
|
SRR25207265
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8665503
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864972
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1175358
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR13232714
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2515344
|
Pre-XDR-TB
|
lineage4.3.3
|
za
|
SRR1183146
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR7911409
|
Pre-XDR-TB
|
lineage2.2.1
|
us
|
ERR2510737
|
Other
|
lineage4.4.1.1
|
it
|
SRR10040396
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827530
|
XDR-TB
|
lineage2.2.1;lineage4
|
None
|
ERR4798250
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
SRR25207241
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18714785
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829602
|
XDR-TB
|
lineage4.8
|
it
|
SRR22137414
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25395618
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911634
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.4.1.1
|
za
|
SRR924239
|
Pre-XDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR7068995
|
HR-TB
|
lineage3
|
None
|
ERR4808864
|
XDR-TB
|
lineage2.2.2
|
za
|
SRR2024977
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4800193
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR23310872
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR2020080
|
HR-TB
|
lineage2.2.1
|
None
|
ERR789236
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR7645829
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2884708
|
Other
|
lineage4.8
|
es
|
SRR16156717
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR6485101
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1013648
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR24256198
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
ERR7911564
|
Pre-XDR-TB
|
lineage2.2.2
|
za
|
ERR5866396
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232491
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1159129
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR10808982
|
Other
|
lineage2.2.1
|
None
|
SRR25827771
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
SRR23086726
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR16088575
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22137465
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25515599
|
Other
|
lineage2.2.1
|
None
|
ERR9993026
|
XDR-TB
|
lineage3
|
None
|
ERR4829789
|
Pre-XDR-TB
|
lineage4.8
|
it
|
SRR23086707
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR4798655
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR16088080
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798703
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR4831487
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR3132211
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5758380
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4796361
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1140938
|
Pre-XDR-TB
|
lineage4.1.1.1
|
None
|
ERR1873449
|
Pre-XDR-TB
|
lineage4.4.1.1
|
za
|
SRR10430389
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1187945
|
Other
|
lineage4.1.2
|
ca
|
SRR671751
|
Pre-XDR-TB
|
lineage4.5
|
cn
|
ERR4796690
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR18715094
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1047984
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4831485
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR1873459
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR10869262
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4798938
|
Pre-XDR-TB
|
lineage3
|
in
|
SRR1049020
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR14782156
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1180950
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR4798068
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5865880
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23311027
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28467049
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR28351511
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351173
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR28351170
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11773759
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28044922
|
XDR-TB
|
lineage3
|
None
|
ERR11773840
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR28351215
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR28044932
|
XDR-TB
|
lineage3
|
None
|
SRR28351274
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR11773803
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN03246341
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28046128
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28393323
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28044449
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
SRR28044334
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
SRR28351228
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28706518
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351354
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351159
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510572
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR2510611
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR2510625
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR3335752
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR3335797
|
Pre-XDR-TB
|
lineage3
|
pk
|
SRR7781513
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7131108
|
Other
|
lineage4.4.1.1
|
None
|
SRR1173587
|
Pre-XDR-TB
|
lineage4.1.1.3
|
None
|
SRR22137451
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6280304
|
Other
|
lineage4.4.2
|
cn
|
SRR25206993
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11082866
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207254
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR7131048
|
Other
|
lineage4.4.1.1
|
None
|
SRR1173056
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4827482
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865375
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8351921
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864064
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR27107246
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR1144812
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR5153834
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR789237
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1048010
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11050829
|
Other
|
lineage3
|
None
|
ERR3287855
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
SRR15465763
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7652975
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865975
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5488604
|
Pre-XDR-TB
|
lineage4.9
|
None
|
SRR6807687
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR4799291
|
Pre-XDR-TB
|
lineage3
|
in
|
SRR5067701
|
HR-TB
|
lineage2.2.2
|
vn
|
ERR11050624
|
Other
|
lineage3
|
None
|
ERR8025461
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5863991
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798178
|
HR-TB
|
lineage1.1.2
|
in
|
SRR22137474
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9992659
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|