Rv0010c - c.-82T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
43 Sensitive
0 RR-TB
13 HR-TB
20 MDR-TB
14 Pre-XDR-TB
3 XDR-TB
10 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.3 | 4 |
| lineage2.2.1 | 39 |
| lineage1.1.3 | 1 |
| lineage4.1.2.1 | 6 |
| lineage4.6.1.2 | 2 |
| lineage4.2 | 1 |
| lineage2.2.1.1 | 4 |
| lineage3 | 4 |
| lineage4.4.1.1;lineage4.6.1.2 | 1 |
| lineage3.1.2 | 1 |
| lineage2.2.1;lineage4.2.1 | 4 |
| lineage4.2.1 | 4 |
| lineage4.4.2 | 1 |
| lineage4.9 | 1 |
| lineage4.8 | 9 |
| lineage4.1.1.2 | 2 |
| lineage4.4.1.1 | 7 |
| lineage3.1.1 | 1 |
| lineage1.1.2 | 3 |
| lineage4.6.2.2 | 1 |
| lineage2.2.2 | 1 |
| lineage4.3.4.2;lineage4.8 | 1 |
| 1 | |
| lineage4.3.3 | 1 |
| lineage1.2.2.1 | 2 |
| lineage1.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 103 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR1034670 | MDR-TB | lineage4.1.1.3 | co | SRR10869231 | Pre-XDR-TB | lineage2.2.1 | None | SRR29017181 | MDR-TB | lineage1.1.3 | None | ERR13284890 | MDR-TB | lineage2.2.1 | None | ERR3275281 | Sensitive | lineage4.1.2.1 | nl | SRR29231735 | MDR-TB | lineage4.6.1.2 | None | SRR29093958 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782766 | Sensitive | lineage4.2 | None | SRR29051484 | Sensitive | lineage2.2.1.1 | None | SRR29093952 | Pre-XDR-TB | lineage2.2.1 | None | ERR13266190 | Sensitive | lineage2.2.1 | None | ERR11050477 | HR-TB | lineage3 | None | SRR1140691 | HR-TB | lineage4.4.1.1;lineage4.6.1.2 | None | SRR6785540 | Sensitive | lineage2.2.1 | None | SRR15014610 | MDR-TB | lineage3.1.2 | None | SRR6832627 | MDR-TB | lineage2.2.1 | None | SRR30340066 | Sensitive | lineage4.1.1.3 | None | SRR29385355 | Sensitive | lineage2.2.1 | None | SRR23862005 | HR-TB | lineage2.2.1;lineage4.2.1 | None | SRR23861715 | HR-TB | lineage4.2.1 | None | SRR23861806 | Sensitive | lineage2.2.1 | None | ERR4818800 | Sensitive | lineage3 | None | ERR13285032 | Other | lineage2.2.1;lineage4.2.1 | None | ERR13291118 | MDR-TB | lineage4.4.2 | None | DRR130193 | Pre-XDR-TB | lineage4.9 | None | SRR28044928 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR4828704 | Sensitive | lineage2.2.1.1 | vn | ERR229967 | HR-TB | lineage4.8 | ru | ERR4821181 | Sensitive | lineage4.1.1.2 | gb | SRR6824610 | Sensitive | lineage2.2.1.1 | cn | SRR21690244 | Sensitive | lineage2.2.1 | None | SRR12062526 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814725 | Sensitive | lineage3 | None | SRR11348171 | Other | lineage4.1.1.3 | None | ERR4832019 | MDR-TB | lineage2.2.1 | vn | SRR1140579 | Sensitive | lineage4.4.1.1 | None | ERR4820428 | Sensitive | lineage3.1.1 | None | ERR2446461 | Sensitive | lineage4.1.2.1 | nl | ERR2446324 | Sensitive | lineage4.8 | nl | ERR11081904 | MDR-TB | lineage2.2.1 | None | ERR11082677 | MDR-TB | lineage4.8 | None | ERR4011074 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02599075 | Sensitive | lineage1.1.2 | None | SRR16088500 | Other | lineage2.2.1 | None | SRR5535834 | MDR-TB | lineage4.6.2.2 | None | SRR21887770 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044694 | Sensitive | lineage4.1.2.1 | None | SRR25515117 | Other | lineage2.2.1 | None | ERR13230594 | Sensitive | lineage2.2.1 | None | SRR10040176 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267758 | Sensitive | lineage4.1.2.1 | None | SRR24828612 | XDR-TB | lineage2.2.1 | None | SRR26399627 | Sensitive | lineage4.1.2.1 | None | SAMN02381001 | Sensitive | lineage4.4.1.1 | ug | ERR4829089 | Other | lineage4.4.1.1 | it | ERR4832037 | MDR-TB | lineage2.2.1 | vn | ERR2516621 | MDR-TB | lineage4.1.1.3 | nl | SRR6824470 | Pre-XDR-TB | lineage2.2.1 | cn | SRR1062891 | Sensitive | lineage4.4.1.1 | None | SRR6832243 | Sensitive | lineage2.2.1 | None | SRR29681352 | Sensitive | lineage2.2.1 | None | ERR11488526 | XDR-TB | lineage2.2.2 | None | SRR5065497 | MDR-TB | lineage2.2.1 | vn | SRR5065481 | Other | lineage2.2.1 | vn | ERR403276 | Pre-XDR-TB | lineage2.2.1 | None | SRR10380045 | HR-TB | lineage4.3.4.2;lineage4.8 | None | SRR1049605 | Sensitive | lineage4.4.1.1 | None | SRR28351252 | MDR-TB | lineage4.2.1 | None | ERR2516138 | MDR-TB | lineage2.2.1 | None | SRR6831997 | HR-TB | lineage2.2.1 | None | ERR4553782 | MDR-TB | None | ERR13284408 | MDR-TB | lineage4.8 | None | ERR2660496 | Sensitive | lineage4.1.1.2 | None | ERR3275440 | Sensitive | lineage4.8 | nl | SRR28868724 | HR-TB | lineage2.2.1 | None | SRR29539388 | HR-TB | lineage2.2.1 | None | ERR11082050 | Sensitive | lineage4.8 | None | ERR11082764 | Other | lineage2.2.1;lineage4.2.1 | None | ERR13289491 | Sensitive | lineage2.2.1 | None | SRR29539390 | HR-TB | lineage2.2.1 | None | ERR11081264 | HR-TB | lineage4.8 | None | ERR13266291 | Sensitive | lineage2.2.1 | None | ERR13272903 | HR-TB | lineage4.8 | None | SRR24828613 | XDR-TB | lineage2.2.1 | None | ERR9786156 | Sensitive | lineage4.8 | None | SRR18715239 | Sensitive | lineage4.3.3 | None | ERR4827471 | Sensitive | lineage2.2.1 | None | DRR261046 | Sensitive | lineage2.2.1 | None | SRR1173013 | Sensitive | lineage1.1.2 | None | ERR4822637 | Other | lineage3 | None | SRR28119758 | Pre-XDR-TB | lineage2.2.1 | None | ERR2707174 | MDR-TB | lineage4.6.1.2 | cd | SRR23861707 | HR-TB | lineage2.2.1;lineage4.2.1 | None | ERR2517178 | Sensitive | lineage4.1.2.1 | nl | ERR4821487 | Other | lineage1.2.2.1 | gb | ERR4821749 | Other | lineage1.2.2.1 | gb | SRR5709792 | Pre-XDR-TB | lineage1.1 | th | SRR1049606 | Sensitive | lineage4.4.1.1 | None | SRR7276713 | Sensitive | lineage4.4.1.1 | None | SRR28498706 | MDR-TB | lineage4.2.1 | None | SRR1173183 | Sensitive | lineage1.1.2 | None | SRR7069732 | Sensitive | lineage4.2.1 | None | SRR28119741 | Pre-XDR-TB | lineage2.2.1 | None |
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