Rv0010c - c.99T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
13398 Sensitive
272 RR-TB
2330 HR-TB
1798 MDR-TB
268 Pre-XDR-TB
69 XDR-TB
11852 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage1.2.2.2 | 2603 |
| lineage1.2.1.2.1 | 3477 |
| lineage1.1.1 | 993 |
| La1.8.1 | 7104 |
| lineage1.1.2 | 4440 |
| lineage1.2.1.2 | 604 |
| lineage1.2.2.1 | 444 |
| lineage1.1.3.1 | 1060 |
| lineage1.1.1.1 | 1556 |
| La1.7.1 | 992 |
| La1.2 | 671 |
| lineage1.1.1.1;lineage2.2.1 | 24 |
| La1.8.2 | 234 |
| lineage6.1.1 | 246 |
| lineage5.1 | 75 |
| La2 | 265 |
| lineage6.2.2 | 91 |
| lineage1.1.3.2 | 506 |
| La1.2.BCG | 647 |
| 93 | |
| lineage5.1.1 | 203 |
| lineage5.1.4 | 79 |
| lineage6 | 44 |
| lineage1.1.2;lineage4.1.2 | 1 |
| La3 | 263 |
| La1.6 | 134 |
| lineage5.1.3 | 41 |
| lineage1.1.2;lineage4.1.2.1 | 4 |
| lineage1.1.3.3 | 241 |
| lineage6.1.3 | 408 |
| lineage1.2.1.1 | 201 |
| lineage6.1.2 | 122 |
| lineage5.1.2 | 66 |
| La1.7.X-unk5 | 13 |
| lineage5.2 | 79 |
| lineage1.1.3 | 222 |
| La2;M.canetti | 1 |
| La1.7.X-unk4 | 82 |
| lineage6.3.1 | 295 |
| M.canetti | 73 |
| lineage6.2.3 | 117 |
| lineage1.2.1 | 61 |
| lineage9 | 30 |
| lineage1.2.2 | 25 |
| lineage1.2.1.2.1;lineage2.2.1 | 8 |
| lineage1.1.2;lineage2.2.1.2 | 1 |
| La1.3 | 136 |
| La1.7 | 32 |
| La1.2.BCG;lineage4.8 | 1 |
| lineage1.2.2.1;lineage2.2.1 | 1 |
| La1.4 | 128 |
| lineage1.2.1.2.1;lineage4 | 3 |
| lineage1.1.1.1;lineage6 | 1 |
| lineage1.2.2.2;lineage4 | 11 |
| lineage1.1;lineage4 | 1 |
| lineage1.1.1.1;lineage4.2.1 | 2 |
| lineage4.1.3;lineage6.3.1 | 4 |
| lineage1.1.2;lineage4.3.4.1 | 1 |
| lineage6.3.2 | 27 |
| lineage5 | 30 |
| lineage1.1 | 27 |
| lineage1.2.2.1;lineage4.9 | 1 |
| lineage4.2.2;lineage6.1.2 | 1 |
| lineage8 | 5 |
| lineage1.2.2.2;lineage3 | 12 |
| La1.1 | 9 |
| lineage6.3.3 | 52 |
| lineage5.1.5 | 23 |
| lineage5.1.1;lineage5.1.2;lineage6.3.1 | 1 |
| lineage4.1.1.3;lineage5.1.2 | 2 |
| lineage5.3 | 51 |
| lineage1.1.1.1;lineage4 | 1 |
| lineage1.1.2;lineage3 | 17 |
| lineage1.1.3;lineage4 | 1 |
| lineage1.1.2;lineage4.1 | 3 |
| lineage1.1.2;lineage4 | 16 |
| La3;M.canetti | 9 |
| lineage1.1.3.2;lineage3.1.1 | 3 |
| lineage1.1.2;lineage1.1.3.1;lineage2.2.1 | 1 |
| La1.1;lineage3 | 1 |
| lineage1.2.2.2;lineage4.1.2 | 2 |
| lineage4;lineage6.3.1 | 4 |
| lineage6.2 | 2 |
| La1.8.X-unk6 | 9 |
| lineage4.8;lineage6.3.1 | 1 |
| lineage6.1.1;lineage6.1.3 | 1 |
| lineage1.2.2.1;lineage4.9.1 | 1 |
| lineage1.1.3.2;lineage4 | 7 |
| lineage1.2.2.2;lineage2.2.1;lineage3.1.2;lineage4 | 1 |
| La1.6;lineage4.1 | 1 |
| lineage1.2.2.2;lineage4.8 | 1 |
| lineage6.1.3;lineage6.2 | 2 |
| lineage6.1.3;lineage6.3.3 | 1 |
| lineage6.2.1 | 33 |
| lineage1.1.3.2;lineage4.3.4.2.1 | 3 |
| lineage1.1.1.1;lineage4.2.2 | 1 |
| lineage1.2.2.2;lineage2.2.1 | 18 |
| lineage1.1.1.1;lineage4.8 | 1 |
| lineage1 | 13 |
| lineage1.1.2;lineage3.1.2 | 4 |
| lineage1.1.2;lineage2.2.1 | 15 |
| lineage1.1.2;lineage1.1.3.3 | 5 |
| lineage1.1.3.3;lineage2.2.1 | 1 |
| lineage6.1.1;lineage6.2 | 1 |
| lineage1.1.2;lineage1.1.3 | 1 |
| lineage1.1.1;lineage1.1.3.3 | 1 |
| lineage5.1.2;lineage6.3.1 | 1 |
| lineage1.2.1.2;lineage2.2.1 | 1 |
| lineage1.1.3.1;lineage4 | 5 |
| lineage1.1.2;lineage1.1.3.1 | 5 |
| La1 | 8 |
| lineage1.1.3.1;lineage3 | 2 |
| lineage1.2.2.1;lineage4 | 6 |
| lineage1.1.2;lineage1.2.2.2 | 11 |
| lineage2.2 | 1 |
| lineage2.2.1 | 5 |
| lineage1.1.3.1;lineage4.7 | 2 |
| lineage1.1.3.1;lineage1.2.2.2 | 3 |
| lineage1.2.2.2;lineage4.1.1.3 | 2 |
| La1.3;lineage1.2.2.2 | 14 |
| lineage1.1.3.2;lineage4.1.1.3 | 2 |
| lineage1.1.1.1;lineage4.4 | 1 |
| lineage2.2.1.1;lineage6.1.2 | 1 |
| lineage1.2.2.2;lineage4.1;lineage4.3.3 | 1 |
| lineage6.1.3;lineage6.2.2 | 1 |
| lineage1.1.1;lineage1.1.2;lineage4.6.1 | 1 |
| La1.8.1;lineage4 | 3 |
| lineage1.1;lineage4.1.3 | 2 |
| La1;lineage1.1.2 | 2 |
| lineage1.2.2.2;lineage3.1.2 | 1 |
| lineage1.2.2.1;lineage4.3.4.2.1 | 3 |
| lineage1;lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage1.2.2.1;lineage4.8.1 | 1 |
| lineage4.1.2.1;lineage6.1.3 | 1 |
| lineage4 | 3 |
| lineage1.1.3.1;lineage3.1 | 1 |
| La1.2.BCG;lineage4.9 | 3 |
| lineage1.1.2;lineage4.3.2.1 | 2 |
| lineage1.1.3;lineage1.2.2.2 | 1 |
| lineage1.2.2.1;lineage4.1.2 | 1 |
| lineage1.1.2;lineage3.1.1 | 8 |
| lineage6.1 | 3 |
| lineage5.1.5;lineage6.1.1 | 1 |
| lineage1.1.2;lineage4.9.1 | 1 |
| La1.2.BCG;La1.8.2 | 1 |
| lineage1.1.3.1;lineage4.3.4.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage1.1.1;lineage2.2 | 1 |
| lineage1.1.1;lineage4.2.2 | 1 |
| lineage1.2.2.2;lineage4.3.2.1 | 3 |
| lineage1.1.2;lineage4.4 | 1 |
| La3;lineage2.2.1 | 3 |
| lineage1.1.3.2;lineage4.1.2 | 1 |
| La1.5 | 8 |
| lineage1.1.2;lineage4.3.4.2.1 | 2 |
| lineage1.1.1;lineage2.2.1.2 | 2 |
| lineage4.1.3;lineage6.2.1 | 1 |
| lineage1.1.2;lineage2 | 2 |
| La1.3;lineage1.2.1.2.1 | 1 |
| lineage1.1.1.1;lineage2.2.1.1 | 7 |
| lineage1.1.1.1;lineage2.2 | 2 |
| lineage1.1.2;lineage3;lineage4 | 1 |
| lineage1.1.2;lineage3.1.2.1 | 1 |
| lineage1.1.3.1;lineage2.2.1.2 | 1 |
| lineage3.1.2;lineage4.9 | 1 |
| lineage1.2.2.2;lineage4.1.2.1 | 1 |
| lineage1.1.2;lineage1.1.3.2 | 1 |
| La1.6;lineage4 | 2 |
| lineage4.1.3;lineage5.1.1 | 2 |
| lineage1.1.1;lineage1.2.1.2.1 | 1 |
| lineage1.1.3.2;lineage1.2.2.2 | 4 |
| lineage4.1.2.1 | 1 |
| lineage1.1.2;lineage4.8 | 3 |
| lineage1.1.1.1;lineage1.1.2 | 1 |
| La1.2;La2 | 1 |
| lineage2.2.1.1 | 1 |
| lineage1.2.1.1;lineage4 | 2 |
| lineage1.1.1;lineage4.8 | 1 |
| lineage6.1.1;lineage6.3.1 | 1 |
| lineage1.2.2.2;lineage4.1.1.1 | 2 |
| lineage1.1;lineage2.2;lineage3.1.1;lineage4.2.2.2;lineage4.3.3 | 1 |
| lineage4.3.4.1;lineage6.1.1 | 1 |
| La1.2;lineage3 | 1 |
| La1.8.1;lineage4.9 | 1 |
| La1.2;lineage4.9 | 1 |
| lineage1.1.3;lineage2.2.1 | 1 |
| lineage4.8;lineage5.1.1 | 2 |
| lineage1.2.2.2;lineage3.1.2.1 | 1 |
| lineage4.1.2.1;lineage6.1.1 | 2 |
| lineage1.1.1.1;lineage2.2.1;lineage4.4.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage1.2.2;lineage3.1.2 | 1 |
| lineage1.2.1.2.1;lineage4.3.4.1 | 1 |
| lineage1.2.2.2;lineage3;lineage4.4.1.1 | 1 |
| lineage1.2.2.2;lineage4.2 | 1 |
| lineage1.1.1;lineage2.2.1 | 6 |
| lineage5.1.1;lineage6.3.1 | 2 |
| lineage1.1.1.1;lineage4.4.2 | 2 |
| La1.2;La1.8.2 | 1 |
| lineage1.1.2;lineage4.1.1.3 | 3 |
| lineage1.1.1.1;lineage4.1 | 1 |
| lineage4.1.2.1;lineage6.3.1 | 4 |
| lineage1.1;lineage4.1.2.1 | 1 |
| lineage1.1.3.1;lineage2.2.1 | 3 |
| La2;lineage4.9 | 1 |
| lineage1.1;lineage2.2.1 | 2 |
| lineage1.2.2.2;lineage2.2.1;lineage3 | 1 |
| lineage1.1.3;lineage4.3.3 | 1 |
| lineage4.6.2.2;lineage6.1.2 | 1 |
| lineage1.1.2;lineage4.7 | 1 |
| lineage4.1;lineage6.3.1 | 2 |
| lineage1.1.2;lineage2.2.1;lineage4.9 | 1 |
| lineage4;lineage6.2.1 | 1 |
| lineage1.1.1.1;lineage1.2.1.2.1 | 2 |
| lineage1.1.2;lineage3.1.1;lineage4.6.1.1 | 1 |
| lineage4.6.2.2 | 1 |
| lineage4.3.4.2;lineage6.1.3 | 1 |
| lineage1.2.2.2;lineage4.3.3 | 3 |
| lineage1.1.3.1;lineage1.2.1.2.1 | 1 |
| lineage2.2.1;lineage6.1.3 | 2 |
| lineage1.2.2.2;lineage4.3.4.2.1 | 2 |
| lineage4.6.2.2;lineage6.3.1 | 1 |
| La1.2;La1.7.1 | 1 |
| La3;lineage4 | 2 |
| lineage1.2.1.2.1;lineage1.2.2 | 1 |
| lineage1.1.2;lineage4.9 | 3 |
| lineage1.1.2;lineage1.2.2.2;lineage4 | 1 |
| lineage4.1.3 | 1 |
| lineage4.1.2.1;lineage6.3.2 | 1 |
| lineage2.2.1.1;lineage6.1.3 | 1 |
| La1.2.BCG;lineage4 | 1 |
| lineage4.3.4.1;lineage4.6.2.2;lineage6.1.2 | 1 |
| La1.1;lineage1.2.2.2 | 1 |
| La1.1;lineage1.2.1.2.1 | 1 |
| lineage1.1.3.3;lineage4 | 2 |
| lineage1.2.1.2.1;lineage3 | 1 |
| lineage1.1.2;lineage4.3.4.2.1;lineage4.4 | 1 |
| lineage1.1.3.2;lineage3.1.1;lineage4 | 1 |
| lineage1.1.3.2;lineage4.1.2.1 | 1 |
| lineage1.1;lineage3.1.1;lineage4;lineage5.1 | 1 |
| La1.2.BCG;lineage1.1.1 | 1 |
| lineage1.2.1.2.1;lineage4.1.2.1 | 1 |
| lineage1.2.2.1;lineage4.1.1.1 | 1 |
| lineage1.2.2.1;lineage4.4.1.1 | 2 |
| lineage1.2.2.2;lineage4.8.1 | 1 |
| La1.8;lineage1.2.2.2 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage1.1.2;lineage3.1.1;lineage4.3.4.2.1 | 1 |
| lineage2.2.1;lineage5 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage4;lineage6.1.3 | 1 |
| lineage3.1.1;lineage4 | 1 |
| lineage1.1.3.2;lineage2.2.1 | 1 |
| lineage1.1.1;lineage4.1.1.3;lineage4.6.2.2 | 1 |
| lineage4.1.2.1;lineage5.3 | 1 |
| lineage1.1.3.1;lineage3;lineage4.4.2 | 1 |
| lineage1.1.2;lineage4.2.2.2 | 1 |
| lineage4.6.2.2;lineage6 | 1 |
| lineage5.1.1;lineage5.1.2 | 1 |
| lineage1.2.2.1;lineage4.3.4.2 | 1 |
| lineage1.2.2.2;lineage2.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1 | 1 |
| lineage1.1.3.1;lineage4.3.3 | 1 |
| lineage1.1.2;lineage3.1.1;lineage4 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4 | 1 |
| lineage4.1.2.1;lineage4.6.2.2;lineage6.3.1 | 1 |
| lineage1.1.2;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage1.1.3;lineage4.2.2.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4.6.1 | 1 |
| lineage1.1.2;lineage4.2.2 | 1 |
| lineage1.1.3.1;lineage4.1.3 | 1 |
| lineage1.1.3.2;lineage4.3.4.2.1;lineage4.9 | 1 |
| La1.7.1;La1.8.1 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2 | 1 |
| lineage1.2.1.1;lineage4.1.1.1 | 1 |
| lineage3 | 1 |
| lineage1.1.2;lineage2.2.1.1 | 1 |
| lineage1.1.1.1;lineage4.1.2.1 | 1 |
| La1.2.BCG;La1.8.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 29987 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
This table has 29987 rows and could cause your browser to crash if rendered.
