ERR4797419
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827792
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR22424780
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797665
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175214
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827436
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799765
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827595
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827540
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4797631
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22424838
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797081
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796434
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797213
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796988
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797700
|
Pre-XDR-TB
|
lineage1.1.3;lineage2.2.1
|
in
|
ERR4800066
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827327
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796360
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR25827804
|
Pre-XDR-TB
|
lineage2.2.1;lineage3.1
|
None
|
SRR25827538
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830982
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4797820
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797390
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798605
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4797944
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827720
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4798875
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827649
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797586
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797160
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830968
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4798744
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798958
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800189
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799436
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798287
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797334
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798626
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797147
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798070
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827325
|
XDR-TB
|
lineage2.2.1;lineage4.9
|
None
|
ERR4799845
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827479
|
XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
ERR4798706
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR386992
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799382
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827631
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR25827486
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799385
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796761
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4796468
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797550
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799210
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799719
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4798972
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797778
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827489
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3.1.2.1
|
None
|
ERR4798242
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827397
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR22175193
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4796269
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797355
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4796655
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827749
|
XDR-TB
|
lineage2.2.1;lineage3;lineage4
|
None
|
ERR4799260
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4796589
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799570
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
in
|
SRR21732689
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798831
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830964
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4797679
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798709
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800321
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799508
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR25827441
|
HR-TB
|
lineage1.1.2;lineage2.2.1;lineage3.1.2
|
None
|
ERR4799285
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799635
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798723
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR25827615
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797297
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797072
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799637
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR11049830
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799681
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4797539
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798811
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797556
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827781
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4797638
|
Pre-XDR-TB
|
lineage2.2.1;lineage3.1.2
|
in
|
ERR4798056
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827622
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827731
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799951
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827456
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799900
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827697
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800212
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799478
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800461
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796679
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR5341257
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799149
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796479
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4798668
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800615
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799404
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799379
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796986
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796843
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2516898
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
SRR25827550
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3.1
|
None
|
ERR4799968
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800043
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799174
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796850
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797668
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798694
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800322
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796256
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830947
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR22424822
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797581
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827873
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799875
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796974
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800537
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827880
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4796722
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798405
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798749
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4800209
|
HR-TB
|
lineage2.2.1
|
in
|
ERR4799041
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796737
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800431
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796951
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827290
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798731
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800576
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797770
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798065
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796948
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827401
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796857
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800599
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4798617
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4796914
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798423
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799713
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799492
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798928
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798393
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796529
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800377
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175216
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797186
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827351
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.1.3
|
None
|
SRR22424726
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798604
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799725
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827745
|
Pre-XDR-TB
|
lineage2.2.1;lineage3.1.2.1
|
None
|
SRR25827394
|
XDR-TB
|
lineage2.2.1;lineage3;lineage4.9
|
None
|
ERR11044053
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799315
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827801
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800598
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827370
|
MDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR22424817
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798637
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827402
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8
|
None
|
ERR7162977
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798383
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799034
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799029
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798291
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800580
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799595
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796337
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798265
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799239
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798264
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799021
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800333
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799955
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4831061
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4797834
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827665
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4798759
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799578
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827851
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796968
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798394
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827328
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
SRR25827435
|
XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4797321
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830954
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4831017
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR25827696
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4796833
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797632
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797697
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827769
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.5
|
None
|
ERR4797551
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800392
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22424936
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22424943
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827355
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4
|
None
|
ERR4797696
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797864
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799294
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798252
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797971
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR25827357
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3
|
None
|
ERR4796996
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798129
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827598
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798479
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796937
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827463
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.1.3
|
None
|
SRR25827576
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799234
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797331
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799070
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796659
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799361
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800292
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796623
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798564
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175191
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827452
|
MDR-TB
|
lineage1.1.2;lineage2.2.1;lineage4.2.2.2
|
None
|
SRR25827299
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799552
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4798292
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796532
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4831090
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4799252
|
HR-TB
|
lineage2.2.1
|
in
|
ERR4799890
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797278
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827691
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798762
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799219
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827646
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
ERR4796528
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22424728
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4830950
|
XDR-TB
|
lineage2.2.1
|
np
|
ERR4796525
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827884
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827677
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798681
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827430
|
Pre-XDR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR25827605
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4
|
None
|
ERR4798476
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796424
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR8380939
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798825
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796423
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799794
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175249
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2516853
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR4796694
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798497
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799288
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798509
|
Pre-XDR-TB
|
lineage2.2.1;lineage3.1.2
|
in
|
ERR4797826
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800023
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799887
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798425
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796698
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799093
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797314
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798134
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798259
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799909
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797896
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797432
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799416
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796443
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
ERR4830662
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4797640
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827300
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796660
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799338
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796599
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799090
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827487
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4799873
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2513240
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR4800378
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4831001
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4798806
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR11050041
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799139
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799444
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827521
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798061
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR2513241
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR4798396
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827346
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798243
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799788
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827627
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082644
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799363
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796995
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4796939
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796869
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796905
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798919
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827484
|
Pre-XDR-TB
|
lineage1;lineage2.2.1;lineage3;lineage4
|
None
|
ERR4796388
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827555
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798994
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796385
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798580
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799717
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800073
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796590
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827527
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.2.2
|
None
|
ERR4798191
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797070
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798725
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799303
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796700
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175203
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797952
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799490
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4831013
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR25827337
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796683
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827879
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827503
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798651
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799158
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800293
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827755
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797711
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
in
|
ERR4830953
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR25827363
|
MDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4800276
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827570
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827376
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4798460
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799839
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799789
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827641
|
XDR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR5341367
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827685
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827752
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827368
|
XDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
ERR4830661
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799230
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797144
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796488
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4796928
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827780
|
XDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
ERR4799953
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797131
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797858
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797710
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799791
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796921
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799259
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4800563
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797137
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796816
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4799214
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4830931
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR25827429
|
Pre-XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage4.9
|
None
|
ERR4799212
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798404
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799722
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR5314268
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797651
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798175
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796973
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800332
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799136
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796652
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797545
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797633
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799433
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799521
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796820
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799694
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800539
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827350
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4830961
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4797187
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798929
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827547
|
XDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
ERR4830927
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR25827668
|
Pre-XDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
ERR4830921
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR1035169
|
Pre-XDR-TB
|
lineage2.2.1
|
sa
|
ERR4799157
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827620
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4800449
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798826
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827412
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799262
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR3639708
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798457
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4830955
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR25827530
|
XDR-TB
|
lineage2.2.1;lineage4
|
None
|
ERR4797762
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827601
|
XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4798588
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799226
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830940
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4799362
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798738
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799206
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4797702
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827717
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage3;lineage4
|
None
|
ERR4799280
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827686
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799911
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4798261
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4831021
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4800337
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827856
|
MDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR22424853
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827834
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4800271
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4831022
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4797172
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800479
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796824
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800504
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827702
|
MDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
ERR4797908
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796925
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797000
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798622
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800326
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797620
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827786
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4830663
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4796967
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799525
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800571
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798786
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800291
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4797672
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796561
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827448
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827881
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827732
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799864
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22424818
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796628
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175244
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827308
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796793
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797501
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR10726050
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796328
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4797326
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797384
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797469
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796712
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4800349
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827764
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796677
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827765
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR26112471
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800616
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798998
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
in
|
ERR4800531
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR5341237
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827475
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798728
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797579
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798342
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175247
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827768
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage4
|
None
|
ERR4798753
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827777
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4799392
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
in
|
ERR4797961
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175170
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827362
|
XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4796347
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1;lineage3.1.2.1
|
in
|
ERR4797635
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800626
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827528
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR25827481
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4799838
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799001
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798503
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799187
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799356
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796794
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798080
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR10225472
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4796335
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796399
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800231
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800091
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827661
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4796803
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4800450
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797111
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799819
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799131
|
HR-TB
|
lineage2.2.1
|
in
|
SRR22175257
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827744
|
Pre-XDR-TB
|
lineage1.1.3.1;lineage2.2.1
|
None
|
SRR25827399
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4796654
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797106
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798208
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796378
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797528
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798045
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827774
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827740
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage3;lineage4
|
None
|
ERR4799870
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827571
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5341251
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799933
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4797315
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830978
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR22424831
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827619
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827371
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
ERR4797704
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799002
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799594
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827298
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799396
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798281
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799082
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798667
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827633
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4799268
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4830916
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR25827583
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800454
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799526
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799872
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798319
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797277
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797492
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827408
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827704
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827623
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797789
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799902
|
MDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
ERR4796702
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800561
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827711
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage3
|
None
|
SRR25827522
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4798349
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22424755
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797617
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827428
|
MDR-TB
|
lineage2.2.1;lineage3;lineage4
|
None
|
SRR25827504
|
MDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4798048
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800622
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4799181
|
HR-TB
|
lineage2.2.1
|
in
|
ERR4800267
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796894
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4797468
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799826
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796627
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798804
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22424839
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799878
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796743
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
in
|
ERR4798878
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827739
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4830977
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4799937
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799661
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798882
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799309
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796514
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4796930
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796774
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799769
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799471
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830952
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4799330
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175255
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799917
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798205
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797558
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799929
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798647
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175222
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799647
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798522
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799674
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800478
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827338
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796646
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800618
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799152
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827643
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR25827296
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3
|
None
|
SRR28044655
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351520
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351363
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28044680
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351163
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351365
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045939
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045767
|
HR-TB
|
lineage2.2.1
|
None
|
SRR28351502
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351615
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351354
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28046042
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351360
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351168
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045843
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351175
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045929
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351230
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798100
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796460
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797921
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800551
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22424942
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799087
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799477
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799654
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR16178828
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799830
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4797683
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827833
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800024
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800582
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR2516886
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR4796276
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827672
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798453
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4830913
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4799945
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797302
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4796813
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR11068844
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799542
|
HR-TB
|
lineage2.2.1
|
None
|
SRR25827875
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1;lineage3
|
None
|
ERR4796518
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827709
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799609
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800471
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175197
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797003
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797048
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799918
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827385
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799946
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796918
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798722
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR21732097
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799437
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797674
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR22424820
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798025
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798023
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4798017
|
XDR-TB
|
lineage2.2.1
|
in
|
SRR25827886
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4796416
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797634
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827329
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799848
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796998
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797039
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799646
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827293
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
ERR4797802
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799040
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4796339
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830981
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4798421
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4796740
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4796560
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799218
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827674
|
XDR-TB
|
lineage2.2.1.1;lineage3
|
None
|
SRR25827427
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1;lineage3;lineage4
|
None
|
SRR22424832
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827316
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4.2.2.2
|
None
|
SRR22175187
|
XDR-TB
|
lineage1.1.2;lineage2.2.1
|
None
|
SRR22175208
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827294
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4799591
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR400382
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR4799360
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799432
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800524
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827393
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797508
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799958
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798858
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28044682
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351268
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351575
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28045544
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351380
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351272
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351362
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045927
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351166
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28044949
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827888
|
XDR-TB
|
lineage1.1.3.1;lineage2.2.1
|
None
|
SRR28351479
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28045946
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28045924
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045254
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351570
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351158
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045640
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR12796624
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045569
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28046043
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28044681
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351319
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045949
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045558
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351530
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28409566
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351282
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045152
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351352
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28046100
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28044338
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28046321
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28044929
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28046131
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351159
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351475
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351359
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351579
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351567
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351161
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4796877
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797015
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797846
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799529
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4797392
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827529
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.8
|
None
|
ERR4800441
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797973
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798827
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799964
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR11049819
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796596
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2517046
|
MDR-TB
|
lineage2.2.1
|
gb
|
ERR4800619
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796456
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799988
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798286
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800006
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796324
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4798255
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827468
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.1.1
|
None
|
ERR4798510
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799335
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798339
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797549
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799364
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798232
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799938
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830990
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4798181
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800064
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796999
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796893
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175174
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4796516
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799156
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800428
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827614
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1;lineage3;lineage4.9
|
None
|
SRR21732571
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798695
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827395
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827676
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798748
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4831029
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR25827482
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4797291
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796812
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799235
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR7070569
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800567
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797712
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799393
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799036
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1;lineage3.1.2.1;lineage4
|
in
|
ERR4797102
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798459
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796884
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797544
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800162
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22175239
|
XDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
ERR4797622
|
Pre-XDR-TB
|
lineage1.1.2;lineage2.2.1
|
in
|
SRR25827838
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4798195
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830999
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4798044
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4799448
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4799852
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798058
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4831014
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
SRR22175181
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800361
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798839
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799384
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797794
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4831023
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4796952
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4830958
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4797600
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796361
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798413
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797705
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR22175215
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827519
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR4798767
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799209
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796906
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827490
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4800080
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4800527
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800406
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827559
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796984
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2516842
|
MDR-TB
|
lineage2.2.1
|
gb
|
SRR28046124
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351484
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28351432
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351269
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351342
|
HR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR28351464
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045810
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28045561
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045543
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28045908
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28046161
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351283
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
SRR28351529
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351485
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351572
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351577
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827446
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28045926
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045253
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045562
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796440
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796645
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796588
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797719
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796608
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827334
|
Pre-XDR-TB
|
lineage2.2.1;lineage3.1.2
|
None
|
ERR4797692
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796547
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797066
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175212
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4798633
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827650
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4.1.2;lineage4.2.2;lineage4.9
|
None
|
SRR7069701
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799060
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796375
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798426
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797570
|
Pre-XDR-TB
|
lineage2.2.1;lineage4
|
in
|
SRR5341349
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4796938
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4798956
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR4797939
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR25827827
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
SRR25827345
|
XDR-TB
|
lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8
|
None
|
SRR22175256
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799290
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797816
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797951
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799229
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827359
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4.8
|
None
|
SRR25827502
|
Pre-XDR-TB
|
lineage2.2.1;lineage3.1.2.1
|
None
|
ERR4798589
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796746
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797156
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827417
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.9
|
None
|
ERR4799216
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR25827510
|
XDR-TB
|
lineage2.2.1.2
|
None
|
ERR4800089
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797391
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|