lineage | Count |
---|---|
lineage2.2.1 | 57 |
lineage4.4.1.1 | 7 |
lineage4.2.1 | 6 |
lineage4.1.2.1 | 33 |
lineage4.8 | 43 |
lineage4.3.3 | 11 |
lineage4 | 4 |
La1.8.1 | 2 |
lineage3 | 4 |
lineage4.3.1 | 2 |
lineage4.3.2 | 2 |
lineage4.3.4.2 | 4 |
lineage4.1.1 | 2 |
5 | |
lineage2.2.2 | 9 |
lineage4.1.1.2 | 1 |
lineage4.9 | 5 |
lineage4.1.1.3 | 6 |
lineage4.3.2.1 | 2 |
lineage4.9.1 | 1 |
lineage4.3.4.1 | 5 |
lineage1.2.2.2 | 1 |
lineage2.2.1.1 | 5 |
lineage4.5 | 3 |
lineage4.7 | 3 |
La1.2.BCG | 1 |
lineage4.6.1.1 | 1 |
lineage1.2.1.2.1 | 2 |
lineage1.2.1.1 | 1 |
lineage3.1.1 | 1 |
lineage1.1.3.1 | 3 |
lineage4.1.2 | 2 |
lineage4.2.2.1 | 1 |
lineage4.6 | 1 |
lineage4;lineage3.1 | 1 |
lineage1.1.1.1 | 2 |
lineage4.2.1.1 | 2 |
lineage4.3.4.2.1 | 1 |
spoligotype | Count |
---|---|
None | 242 |
ID | Drug resistance | Lineage | Country iso2 | SRR7516393 | MDR-TB | lineage2.2.1 | None | SRR7341681 | MDR-TB | lineage4.4.1.1 | None | ERR11067448 | Sensitive | lineage4.4.1.1 | None | SRR7592352 | Pre-XDR-TB | lineage4.2.1 | None | ERR11067487 | Sensitive | lineage4.1.2.1 | None | SRR9971033 | RR-TB | lineage2.2.1 | None | ERR11067594 | Sensitive | lineage4.8 | None | ERR10969145 | Sensitive | lineage4.1.2.1 | None | ERR11067600 | Sensitive | lineage4.8 | None | ERR11043494 | Sensitive | lineage4.3.3 | None | ERR11043561 | MDR-TB | lineage2.2.1 | None | ERR1194805 | Other | lineage2.2.1 | None | ERR11043600 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043766 | MDR-TB | lineage4 | None | ERR4352204 | Other | La1.8.1 | None | ERR4276913 | MDR-TB | lineage3 | None | ERR4383969 | Sensitive | lineage4.3.1 | None | ERR4383951 | MDR-TB | lineage4.3.2 | None | ERR4383944 | Sensitive | lineage4.3.1 | None | ERR4553436 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4450955 | Other | La1.8.1 | None | ERR4812065 | Other | lineage4.1.1 | None | ERR4553443 | MDR-TB | lineage4.8 | None | ERR4553426 | MDR-TB | lineage4.3.4.2 | None | ERR4553505 | MDR-TB | None | ERR4553603 | MDR-TB | lineage2.2.2 | None | ERR4553981 | MDR-TB | lineage4 | None | ERR4553480 | Pre-XDR-TB | None | ERR4553492 | MDR-TB | None | ERR5908213 | Sensitive | lineage4.3.3 | None | ERR4812391 | Sensitive | lineage4.3.2 | None | ERR4812460 | Sensitive | lineage4.1.2.1 | None | ERR4812622 | Sensitive | lineage4.1.2.1 | None | ERR5908143 | Sensitive | lineage4.1.1.2 | None | ERR4812086 | Sensitive | lineage4.1.2.1 | None | ERR4812126 | HR-TB | None | ERR4812248 | Sensitive | lineage4.1.2.1 | None | ERR4812429 | Sensitive | lineage4.9 | None | ERR4812639 | Sensitive | lineage4.1.2.1 | None | ERR5908206 | Sensitive | lineage4.2.1 | None | ERR5979811 | Sensitive | lineage4.9 | None | ERR6720547 | Sensitive | lineage2.2.1 | None | ERR9992751 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR7737862 | MDR-TB | lineage2.2.1 | None | ERR9992625 | Pre-XDR-TB | lineage2.2.2 | None | ERR9992747 | Pre-XDR-TB | lineage2.2.2 | None | ERR7361933 | Sensitive | lineage4.1.2.1 | None | ERR7737733 | MDR-TB | lineage4.3.2.1 | None | ERR7737766 | RR-TB | lineage4.9.1 | None | ERR8025351 | Sensitive | lineage4.9 | None | ERR9119098 | Sensitive | lineage4.3.3 | None | ERR9285856 | Sensitive | lineage4.3.4.1 | None | ERR9992627 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR9992756 | XDR-TB | lineage2.2.2 | None | ERR9992758 | Pre-XDR-TB | lineage4.8 | None | ERR9992956 | Pre-XDR-TB | lineage2.2.2 | None | ERR9992790 | Pre-XDR-TB | lineage2.2.2 | None | ERR9992866 | MDR-TB | lineage2.2.1 | None | ERR9992917 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR9992938 | Pre-XDR-TB | lineage2.2.2 | None | ERR9992788 | RR-TB | lineage2.2.1 | None | ERR9993094 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR9993003 | Pre-XDR-TB | lineage2.2.2 | None | ERR9993052 | MDR-TB | lineage4.1.1.3 | None | ERR9993151 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR9993137 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR9993139 | Pre-XDR-TB | lineage2.2.1 | None | ERR9993135 | RR-TB | lineage3 | None | ERR9993210 | RR-TB | lineage2.2.1.1 | None | ERR9993221 | Pre-XDR-TB | lineage2.2.1 | None | ERR9993217 | RR-TB | lineage4.1.1.3 | None | ERR9993259 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR9993237 | Pre-XDR-TB | lineage2.2.1 | None | SRR10379945 | RR-TB | lineage4.8 | None | SRR10379880 | Sensitive | lineage4.3.3 | None | SRR10380017 | Pre-XDR-TB | lineage4.2.1 | None | SRR10380070 | MDR-TB | lineage4.2.1 | None | SRR10809105 | Sensitive | lineage4.4.1.1 | None | SRR10808623 | Sensitive | lineage2.2.1 | None | SRR10809007 | Sensitive | lineage4.5 | None | SRR10869021 | Sensitive | lineage4.3.2.1 | None | SRR10851741 | Sensitive | lineage4.3.4.1 | None | SRR10809107 | Sensitive | lineage4.1.2.1 | None | SRR10809133 | HR-TB | lineage2.2.1.1 | None | SRR10851737 | Sensitive | lineage4.1.1 | None | SRR10869115 | Sensitive | lineage2.2.1.1 | None | SRR10869028 | Pre-XDR-TB | lineage4.7 | None | SRR10869150 | Sensitive | lineage2.2.1.1 | None | SRR10869265 | MDR-TB | lineage2.2.2 | None | SRR11871410 | Pre-XDR-TB | lineage2.2.1 | None | SRR12931794 | HR-TB | lineage4.1.2.1 | None | SRR14164525 | Sensitive | lineage4.3.3 | None | SRR13399342 | Other | La1.2.BCG | None | SRR12931779 | Sensitive | lineage4.3.4.2 | None | SRR14164447 | Sensitive | lineage4.1.2.1 | None | SRR14164484 | Sensitive | lineage4.1.2.1 | None | SRR14164827 | Sensitive | lineage4.3.3 | None | SRR14164881 | Sensitive | lineage4.1.2.1 | None | SRR14165045 | Sensitive | lineage4.1.2.1 | None | SRR14165096 | Sensitive | lineage4.3.4.1 | None | SRR14165058 | HR-TB | lineage4.1.2.1 | None | SRR14165139 | Sensitive | lineage4.3.4.1 | None | SRR14165115 | Other | lineage4.3.3 | None | SRR14782776 | Other | lineage2.2.1 | None | SRR14781963 | HR-TB | lineage2.2.1 | None | SRR14782046 | Sensitive | lineage4.8 | None | SRR14782191 | Sensitive | lineage4.1.2.1 | None | SRR14782448 | Sensitive | lineage4.3.3 | None | SRR16156681 | MDR-TB | lineage2.2.1 | None | SRR16295737 | Other | lineage2.2.1 | None | SRR16295733 | Sensitive | lineage2.2.1 | None | SRR16295739 | Other | lineage2.2.1 | None | SRR16295781 | Other | lineage2.2.1 | None | SRR16295734 | Other | lineage2.2.1 | None | SRR16295732 | Other | lineage2.2.1 | None | SRR16295790 | Other | lineage2.2.1 | None | SRR16295792 | Other | lineage2.2.1 | None | SRR16295795 | Sensitive | lineage2.2.1 | None | SRR16295793 | Other | lineage2.2.1 | None | SRR16295807 | Other | lineage2.2.1 | None | SRR16295816 | Other | lineage2.2.1 | None | SRR16295810 | Other | lineage2.2.1 | None | SRR16295805 | Other | lineage2.2.1 | None | SRR16295811 | Other | lineage2.2.1 | None | SRR16295817 | Other | lineage2.2.1 | None | SRR16295815 | Sensitive | lineage2.2.1 | None | SRR16295814 | Other | lineage2.2.1 | None | SRR16295825 | Other | lineage2.2.1 | None | SRR16295824 | Other | lineage2.2.1 | None | SRR16295821 | Other | lineage2.2.1 | None | SRR16295818 | Sensitive | lineage2.2.1 | None | SRR16295828 | Other | lineage2.2.1 | None | SRR18337382 | HR-TB | lineage4.1.2.1 | None | SRR16295827 | Sensitive | lineage2.2.1 | None | SRR16370540 | MDR-TB | lineage2.2.1 | None | SRR18337416 | Sensitive | lineage4.6.1.1 | None | SRR18337387 | Other | lineage4.8 | None | SRR19976651 | Sensitive | lineage4.9 | None | SRR18665434 | Sensitive | lineage4.1.2.1 | None | SRR21240222 | Sensitive | lineage4.3.3 | None | ERR11068320 | Sensitive | lineage4.4.1.1 | None | SRR21595825 | Other | lineage1.2.1.2.1 | None | SRR22536482 | MDR-TB | lineage4.3.3 | None | ERR11067872 | Sensitive | lineage4.1.2.1 | None | ERR11067951 | Other | lineage4.1.2.1 | None | ERR11068148 | Sensitive | lineage1.2.1.1 | None | ERR11068347 | Other | lineage4.7 | None | ERR11068381 | Sensitive | lineage3 | None | ERR11067709 | Sensitive | lineage4.8 | None | ERR11067870 | Sensitive | lineage4.7 | None | ERR11068319 | Sensitive | lineage4.1.2.1 | None | ERR11068429 | Sensitive | lineage4.1.2.1 | None | ERR11068414 | Sensitive | lineage4.1.2.1 | None | ERR11068415 | Sensitive | lineage3.1.1 | None | ERR11068433 | Sensitive | lineage4.1.2.1 | None | ERR11068456 | Sensitive | lineage1.1.3.1 | None | ERR11068467 | Sensitive | lineage3 | None | ERR11068463 | Other | lineage4.1.2 | None | ERR11068580 | Sensitive | lineage4.4.1.1 | None | ERR11068546 | Sensitive | lineage4.8 | None | ERR11068607 | Sensitive | lineage4.5 | None | ERR11068590 | Sensitive | lineage4.3.4.1 | None | ERR11081272 | HR-TB | lineage4.2.2.1 | None | ERR11068614 | Sensitive | lineage1.1.3.1 | None | ERR11068692 | Sensitive | lineage4.6 | None | ERR11068710 | Sensitive | lineage4.8 | None | ERR11069134 | Sensitive | lineage4.3.4.2 | None | ERR11081148 | Sensitive | lineage4.1.2.1 | None | ERR11068670 | Sensitive | lineage4.1.2.1 | None | ERR11068871 | MDR-TB | lineage2.2.1 | None | ERR11081282 | MDR-TB | lineage4.5 | None | ERR11082727 | Pre-XDR-TB | lineage4.2.1 | None | ERR2229577 | Sensitive | lineage4.8 | None | SRR23861743 | Sensitive | lineage4.3.3 | None | SRR3391820 | Sensitive | lineage4.1.1.3 | None | SRR23862116 | Sensitive | lineage4.8 | None | SRR23861754 | Other | lineage2.2.1 | None | SRR24035899 | Sensitive | lineage1.2.1.2.1 | None | ERR9806924 | RR-TB | lineage4.8 | None | ERR10229549 | Sensitive | lineage4.9 | None | ERR4813492 | Sensitive | lineage4.1.2 | None | SRR3391819 | Sensitive | lineage4.1.1.3 | None | ERR2229085 | HR-TB | lineage4.8 | None | ERR2229531 | Sensitive | lineage4.8 | None | ERR2229539 | Sensitive | lineage4.8 | None | ERR2229572 | Sensitive | lineage4.8 | None | ERR2229541 | Other | lineage4.8 | None | ERR2229756 | Sensitive | lineage4.8 | None | ERR2229579 | Sensitive | lineage4 | None | ERR2229113 | HR-TB | lineage4.8 | None | ERR2229266 | Sensitive | lineage4.8 | None | ERR2245282 | HR-TB | lineage4;lineage3.1 | None | ERR2229239 | Sensitive | lineage4.8 | None | ERR2229186 | Sensitive | lineage4.8 | None | ERR2229200 | Sensitive | lineage4.8 | None | ERR2229264 | Sensitive | lineage4.8 | None | ERR2229299 | Sensitive | lineage4.8 | None | ERR2229301 | Sensitive | lineage4.8 | None | ERR2229346 | Sensitive | lineage4.8 | None | ERR2229332 | RR-TB | lineage4.8 | None | ERR2229666 | Sensitive | lineage4.8 | None | ERR4827440 | MDR-TB | lineage2.2.1 | None | ERR2229369 | Other | lineage4.8 | None | ERR2229371 | Sensitive | lineage4.8 | None | ERR2229381 | Sensitive | lineage4.8 | None | ERR2229382 | Sensitive | lineage4.8 | None | ERR2229395 | Sensitive | lineage4.8 | None | ERR2229393 | Other | lineage4.8 | None | ERR2229440 | Sensitive | lineage4.8 | None | ERR2229389 | RR-TB | lineage4 | None | SRR5486875 | Pre-XDR-TB | lineage4.8 | None | ERR4827439 | MDR-TB | lineage2.2.1 | None | ERR4827438 | MDR-TB | lineage2.2.1 | None | ERR4827756 | MDR-TB | lineage2.2.1 | None | ERR4827448 | Pre-XDR-TB | lineage2.2.1 | None | ERR4827453 | Other | lineage4.1.2.1 | None | ERR4828094 | MDR-TB | lineage2.2.1 | None | ERR4827489 | HR-TB | lineage4.8 | None | ERR4827490 | Sensitive | lineage4.1.2.1 | None | ERR2843463 | Sensitive | lineage1.1.1.1 | None | ERR4828144 | HR-TB | lineage2.2.1 | None | SRR6485070 | Sensitive | lineage4.2.1.1 | None | ERR4828650 | Sensitive | lineage4.1.2.1 | None | SRR6485053 | Sensitive | lineage4.1.2.1 | None | ERR4828427 | Sensitive | lineage1.1.1.1 | None | SRR6484850 | Other | lineage2.2.1 | None | SRR6484834 | Sensitive | lineage4.1.2.1 | None | ERR4831559 | RR-TB | lineage4.8 | None | SRR6484859 | HR-TB | lineage4.2.1 | None | SRR6484938 | HR-TB | lineage2.2.1 | None | SRR6785185 | Pre-XDR-TB | lineage2.2.1 | None | SRR6785230 | HR-TB | None | SRR6785327 | Sensitive | lineage2.2.1 | None | SRR6785261 | HR-TB | lineage4.2.1.1 | None | ERR11067345 | Sensitive | lineage2.2.1 | None | SRR6785366 | Sensitive | lineage4.1.2.1 | None | SRR6785354 | MDR-TB | lineage4.3.4.2.1 | None | SRR6785461 | Sensitive | lineage4.8 | None | SRR6785504 | Sensitive | lineage4.8 | None | ERR11067358 | Sensitive | lineage1.1.3.1 | None | SRR6807750 | MDR-TB | lineage2.2.1 | None | SRR6807752 | Sensitive | lineage4.8 | None |
---|