lineage | Count |
---|---|
La1.2 | 2 |
La1.6 | 1 |
lineage2.2.1.1 | 1 |
La1.8.1 | 15 |
lineage4.9 | 8 |
lineage2.2.1 | 9 |
lineage1.2.1.2.1 | 3 |
La1.7.1 | 3 |
La2 | 1 |
lineage1.1.3.1 | 1 |
lineage4.3.4.2 | 4 |
lineage4.1.2.1 | 11 |
lineage4.2.2.2 | 2 |
lineage1.2.2.2 | 2 |
La1.3 | 1 |
La1.8.X-unk6 | 1 |
lineage4.3.3 | 7 |
lineage4.3.4.1 | 1 |
lineage4.5 | 1 |
lineage4.4.1.1 | 2 |
lineage4.1.1.3 | 3 |
lineage4.3.2 | 1 |
lineage4 | 1 |
lineage4.1.1 | 2 |
lineage1.1.2 | 1 |
lineage3 | 4 |
lineage4.8 | 1 |
lineage1.1.3 | 1 |
lineage3.1.3 | 2 |
lineage4.8.2 | 1 |
lineage4.4 | 1 |
lineage4.1.1.3.1 | 1 |
lineage2.1 | 1 |
lineage4.3.1.1 | 1 |
lineage4.7 | 1 |
lineage4.1.1.2 | 1 |
lineage2.2 | 1 |
lineage4.8.1 | 1 |
spoligotype | Count |
---|---|
None | 101 |
ID | Drug resistance | Lineage | Country iso2 | SRR11418337 | Other | La1.2 | None | SRR10993940 | Other | La1.6 | None | SRR11972316 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR11462938 | Other | La1.8.1 | None | SRR11823427 | Sensitive | lineage4.9 | None | SRR11972288 | Pre-XDR-TB | lineage2.2.1 | None | SRR16058013 | HR-TB | lineage1.2.1.2.1 | None | SRR13199743 | Other | La1.7.1 | None | SRR13888781 | Sensitive | La2 | None | SRR14296121 | Other | La1.8.1 | None | SRR14296153 | Other | La1.8.1 | None | SRR14296177 | Other | La1.8.1 | None | SRR14296230 | Other | La1.8.1 | None | SRR14296232 | Other | La1.8.1 | None | SRR14296301 | Other | La1.8.1 | None | SRR14296327 | Other | La1.8.1 | None | SRR14296333 | Other | La1.8.1 | None | SRR11972444 | Sensitive | lineage1.1.3.1 | None | SRR12634612 | Sensitive | lineage4.3.4.2 | None | SRR13199752 | Other | La1.2 | None | SRR16058529 | Sensitive | lineage4.1.2.1 | None | SRR16370340 | Sensitive | lineage4.1.2.1 | None | SRR16097562 | Pre-XDR-TB | lineage2.2.1 | None | SRR16115036 | HR-TB | lineage4.2.2.2 | None | SRR16370226 | Sensitive | lineage4.1.2.1 | None | SRR16370327 | Other | lineage1.2.2.2 | None | SRR1657065 | Other | La1.8.1 | None | SRR1791712 | Other | La1.3 | None | SRR1792081 | Other | La1.8.1 | None | SRR1791863 | Other | La1.8.1 | None | SRR1792209 | Other | La1.7.1 | None | SRR1792479 | Other | La1.8.X-unk6 | None | SRR18910168 | Sensitive | lineage4.3.3 | None | SRR1791866 | Other | La1.7.1 | None | SRR18897165 | Other | lineage4.1.2.1 | None | SRR19224229 | Sensitive | lineage4.1.2.1 | None | SRR18914241 | Sensitive | lineage2.2.1 | None | SRR18910170 | HR-TB | lineage4.2.2.2 | None | SRR19325520 | Sensitive | lineage4.3.4.1 | None | SRR19276638 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR21726720 | Sensitive | lineage4.5 | None | SRR2101405 | MDR-TB | lineage4.4.1.1 | None | SRR21240206 | Sensitive | lineage4.3.3 | None | SRR21658641 | Sensitive | lineage2.2.1 | None | SRR21662822 | Sensitive | lineage4.3.3 | None | SRR21674633 | Sensitive | lineage1.2.2.2 | None | SRR21676941 | Sensitive | lineage4.3.3 | None | SRR21677246 | Sensitive | lineage1.2.1.2.1 | None | SRR21709621 | Sensitive | lineage4.1.1.3 | None | SRR21709855 | Sensitive | lineage2.2.1 | None | SRR21710572 | Sensitive | lineage4.1.2.1 | None | SRR21711114 | Sensitive | lineage4.3.3 | None | SRR21726722 | Sensitive | lineage4.3.2 | None | ERR4815761 | Sensitive | lineage4.9 | None | ERR552522 | Sensitive | lineage4 | None | SRR3091243 | Other | La1.8.1 | None | ERR4815302 | HR-TB | lineage4.1.1 | None | SRR3091246 | Other | La1.8.1 | None | ERR1750934 | Sensitive | lineage2.2.1 | None | ERR4814874 | MDR-TB | lineage1.1.2 | None | ERR4815738 | Other | lineage3 | None | ERR2229337 | Other | lineage4.8 | None | ERR4815048 | Sensitive | lineage1.1.3 | None | ERR4815577 | Other | lineage3.1.3 | None | ERR4815589 | Sensitive | lineage4.8.2 | None | ERR4816638 | Sensitive | lineage4.4.1.1 | None | ERR4817183 | Sensitive | lineage4.1.2.1 | None | ERR4818612 | HR-TB | lineage4.4 | None | ERR2503373 | Sensitive | lineage4.1.2.1 | None | ERR2513611 | Sensitive | lineage4.3.4.2 | None | ERR4819155 | Sensitive | lineage4.1.1.3.1 | None | ERR4819367 | Sensitive | lineage4.9 | None | ERR2513941 | Sensitive | lineage3.1.3 | None | ERR4819395 | Sensitive | lineage4.9 | None | ERR4819375 | Sensitive | lineage4.9 | None | ERR2514394 | Other | lineage4.3.4.2 | None | ERR4819666 | Sensitive | lineage4.1.1 | None | ERR4820797 | Sensitive | lineage4.1.1.3 | None | ERR4820571 | HR-TB | lineage3 | None | ERR2514764 | HR-TB | lineage3 | None | ERR4820095 | Sensitive | lineage4.9 | None | ERR4832016 | MDR-TB | lineage2.1 | None | SRR6045422 | Other | lineage4.3.1.1 | None | ERR2653089 | MDR-TB | lineage4.7 | None | SRR6045024 | Other | lineage4.1.1.2 | None | SRR6046627 | Sensitive | lineage4.3.3 | None | SRR6045838 | Sensitive | lineage3 | None | SRR6256992 | Pre-XDR-TB | lineage2.2.1 | None | SRR6982287 | Sensitive | lineage2.2 | None | SRR6982253 | MDR-TB | lineage4.8.1 | None | SRR6982179 | Sensitive | lineage4.1.1.3 | None | SRR8073654 | Other | La1.8.1 | None | ERR4407543 | Sensitive | lineage2.2.1 | None | SRR9941001 | Sensitive | lineage4.9 | None | DRR034488 | Sensitive | lineage4.9 | None | DRR184932 | Other | lineage2.2.1 | None | ERR9125777 | Sensitive | lineage4.1.2.1 | None | ERR9125730 | HR-TB | lineage1.2.1.2.1 | None | ERR9786550 | Sensitive | lineage4.1.2.1 | None | ERR9891969 | Sensitive | lineage4.3.3 | None | ERR9891990 | Sensitive | lineage4.1.2.1 | None |
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