Rv0565c - c.390G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
33067 Sensitive
1914 RR-TB
5522 HR-TB
21269 MDR-TB
14006 Pre-XDR-TB
1413 XDR-TB
5840 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 52717 |
| lineage3.1.1 | 2102 |
| lineage3 | 12931 |
| lineage2.2.2 | 4497 |
| lineage2.2.1.1 | 4752 |
| lineage2.2.1.2 | 535 |
| lineage3.1.2 | 1334 |
| lineage2.1 | 674 |
| lineage3.1.3 | 382 |
| lineage3.1;lineage4.9.1 | 1 |
| lineage3.1.2.2 | 115 |
| lineage3.1 | 276 |
| lineage2.2.1;lineage4.1.2.1 | 76 |
| lineage2.2.1;lineage3 | 94 |
| lineage3.1.2.1 | 928 |
| lineage1.1.3.1;lineage3 | 3 |
| lineage2.2.1;lineage2.2.2;lineage4 | 2 |
| lineage2.2.1;lineage4 | 165 |
| lineage2.2.1;lineage4.3.3 | 108 |
| lineage2.2 | 38 |
| lineage2.2.1;lineage4.3.2.1 | 28 |
| lineage2.2.1.1;lineage4.4.2 | 3 |
| lineage3.1.1;lineage4.8 | 1 |
| lineage4.1.2.1 | 5 |
| lineage1.2.2.2;lineage3 | 13 |
| lineage2.2.1;lineage4.3.4.2 | 9 |
| lineage3.1.2;lineage4 | 4 |
| lineage2.2.1;lineage2.2.2 | 37 |
| La1.4;lineage2.2.1 | 1 |
| lineage2.2.1;lineage4.4.2 | 18 |
| lineage2.2.1;lineage4.5 | 31 |
| lineage2.2.1;lineage4.2.1 | 80 |
| lineage1.1.3.3;lineage2.2.1 | 3 |
| lineage1.2.2.2;lineage3.1.2 | 1 |
| lineage2.2.1.1;lineage4.1.1.3;lineage4.4.1.1.1 | 1 |
| lineage3;lineage4 | 43 |
| lineage2.2.1;lineage4.3.4.1 | 8 |
| lineage1.1.2;lineage2.2.1 | 16 |
| lineage2.2.1;lineage4.4.2;lineage4.5 | 1 |
| lineage3.1.2.1;lineage4 | 5 |
| 64 | |
| lineage2.2.1;lineage4.8 | 67 |
| lineage1.1.2;lineage3.1.1;lineage4.3.4 | 1 |
| lineage1.1.1.1;lineage2.2.1 | 28 |
| La1.6;lineage4 | 1 |
| lineage1;lineage2.2.1;lineage3;lineage4 | 1 |
| lineage2.2.1.1;lineage3;lineage4 | 2 |
| lineage3;lineage4.6.2.2 | 1 |
| lineage2.2.1;lineage4.1.1;lineage4.8 | 2 |
| lineage2.2.1.1;lineage3 | 16 |
| lineage2.2.1.1;lineage4 | 13 |
| lineage3;lineage4.2.2 | 1 |
| lineage2.2.1.1;lineage2.2.1.2 | 1 |
| lineage2.2.1.1;lineage4.4.1.1 | 3 |
| lineage2.2.2;lineage4 | 12 |
| lineage2.2.1;lineage4.1 | 6 |
| lineage1.2.2.1;lineage2.2.1 | 1 |
| lineage2.2.1;lineage4.9 | 32 |
| lineage2 | 13 |
| lineage2.2.1;lineage4.2.2.2 | 11 |
| lineage3;lineage4.1.2.1 | 6 |
| lineage3;lineage4.2.2.2 | 6 |
| lineage2.2.1.1;lineage4.3.3 | 7 |
| lineage1.2.1.2.1;lineage2.2.1 | 7 |
| lineage2.2.1;lineage4.1.1.3 | 12 |
| lineage3.1.1;lineage4.1.2.1 | 1 |
| lineage3;lineage4.3.4.1 | 2 |
| lineage3;lineage4.2 | 2 |
| lineage3;lineage4.4 | 4 |
| lineage2.2.1.2;lineage4.1.1.3 | 2 |
| lineage2.2.1;lineage4.3 | 4 |
| lineage2.2;lineage4.3.2 | 1 |
| lineage2.2.1.2;lineage3 | 5 |
| lineage3.1.3;lineage4 | 4 |
| lineage2.2.1;lineage4.1.2 | 9 |
| lineage2.2.1;lineage4.3.3;lineage4.4.1.1 | 1 |
| lineage1.2.2.2;lineage2.2.1;lineage3 | 3 |
| lineage1.1.3.1;lineage3.1 | 1 |
| lineage2.2.1;lineage4.2.2 | 11 |
| lineage4.1.1.3 | 1 |
| lineage1.1.1;lineage2.2.1.2 | 2 |
| lineage3;lineage4.9 | 10 |
| lineage2.2.1.1;lineage3.1.2 | 3 |
| lineage3.1.2;lineage4.8 | 3 |
| lineage1.1.2;lineage2 | 1 |
| lineage3.1;lineage4.8 | 2 |
| lineage2.2.1;lineage4.3;lineage4.8 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8 | 2 |
| lineage3.1.1;lineage4 | 20 |
| lineage2.2.1;lineage4.7 | 8 |
| lineage3.1.2;lineage4.3.4.1 | 1 |
| La1.3;lineage2.2.1 | 3 |
| lineage3.1.1;lineage4.3.4.2.1 | 5 |
| lineage1;lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage3;lineage4.8.2 | 1 |
| lineage4 | 2 |
| lineage3.1.1;lineage4.2.2.2 | 4 |
| lineage2.2.1;lineage4.1.1.2 | 2 |
| lineage2.2.1;lineage4.2.1.1 | 16 |
| lineage1.1.2;lineage3.1.1 | 5 |
| lineage2.2.1.1;lineage4.3.2.1 | 12 |
| La1.2;lineage2.2.1 | 1 |
| lineage2.2.1;lineage4.1.2;lineage4.8 | 4 |
| lineage3;lineage4.8 | 13 |
| lineage1.1.2;lineage3.1.1;lineage4 | 2 |
| lineage3.1.2;lineage4.9 | 4 |
| lineage3.1.2.1;lineage4.3.4.2 | 3 |
| lineage2.2;lineage4.9 | 2 |
| lineage1.1.2;lineage3 | 17 |
| lineage1.2.2.2;lineage2.2.1;lineage3;lineage4.9 | 1 |
| lineage3;lineage4.3.3 | 8 |
| lineage3.1.2;lineage4.5 | 1 |
| lineage2.2.1;lineage4.2.1;lineage4.3.3 | 1 |
| lineage2.2;lineage4.8 | 1 |
| lineage1.1.1.1;lineage2.2.1.1 | 9 |
| lineage1.1.1;lineage2.2 | 1 |
| lineage2.2.2;lineage4.1.1.3 | 4 |
| lineage2.2.1;lineage3.1.1;lineage4.2.2 | 1 |
| La3;lineage2.2.1 | 7 |
| lineage2.2.1;lineage3.1.1;lineage4.2.2.2;lineage4.3.3 | 1 |
| lineage2.2.2;lineage4.3.3 | 1 |
| lineage2.1;lineage2.2.1 | 4 |
| lineage2.2.1;lineage4.1.1 | 5 |
| lineage2.1;lineage2.2.1.1 | 2 |
| lineage3;lineage4.1.1.3 | 7 |
| lineage2.2.1;lineage4.3.2 | 14 |
| lineage2.2.1;lineage3.1.2 | 13 |
| lineage2.2.1;lineage4.4.1.1 | 19 |
| La3;M.canetti | 9 |
| lineage1.1.3;lineage3 | 1 |
| lineage1.2.2.2;lineage2.2.1 | 22 |
| lineage2;lineage4.3.4.2.1 | 1 |
| lineage4.3.4.2 | 2 |
| lineage2.2.1;lineage4.3.4.2.1 | 6 |
| lineage4.2.1 | 1 |
| lineage2;lineage4.9 | 2 |
| lineage1.1.2;lineage3.1.2 | 4 |
| lineage2.2.1.2;lineage4.9 | 4 |
| lineage1.1.3.1;lineage3.1.2 | 1 |
| lineage2.2.1.1;lineage4.4.1.1.1 | 4 |
| lineage3.1.2;lineage4.3.4.2.1 | 4 |
| lineage2.2.1;lineage3.1.3 | 1 |
| lineage1.2.2.2;lineage2.2.1;lineage3.1.2;lineage4 | 1 |
| lineage2.2.1.1;lineage4.1.1.1 | 1 |
| lineage4.3.2.1 | 3 |
| lineage1.1.3.2;lineage3.1.1 | 2 |
| lineage2.2.2;lineage4.9 | 3 |
| lineage1.1.2;lineage1.1.3.1;lineage2.2.1 | 1 |
| lineage2.2.1.1;lineage2.2.2 | 7 |
| lineage2.2.1;lineage4.4.1.1.1 | 2 |
| lineage3.1.1;lineage3.1.3 | 2 |
| lineage1.1.3.3;lineage2.2.1;lineage3 | 1 |
| M.canetti | 4 |
| M.canetti;lineage2.2 | 3 |
| lineage2.2.1.1;lineage3;lineage4.1.1.1 | 1 |
| lineage2.2.1.1;lineage4.1.1.3 | 3 |
| lineage3.1.2;lineage4.3.3 | 3 |
| lineage1.1.2;lineage2.2.1.2 | 1 |
| La1.4;lineage2.2.2 | 1 |
| lineage2.2.1;lineage4.3.3;lineage4.8 | 4 |
| lineage1.1.1;lineage2.2.1 | 8 |
| lineage2.2.1.1;lineage4.6.1 | 4 |
| lineage2.2.1;lineage3;lineage4.8 | 2 |
| lineage2.2.1.1;lineage4.1.2.1 | 3 |
| lineage3;lineage4.2;lineage4.6.1.2 | 1 |
| lineage2.2.1.1;lineage3.1.2;lineage4.4 | 1 |
| lineage1.1.1;lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage2.2.1;lineage4.1.1.1 | 4 |
| lineage2.2.1;lineage4.2.2.1 | 1 |
| lineage2.2.1.1;lineage4.1.2 | 3 |
| lineage1.1 | 1 |
| lineage1.1.2;lineage2.2.1;lineage4.9 | 1 |
| lineage3;lineage4.1.1.1 | 3 |
| lineage3.1.1;lineage4.3.4.2 | 2 |
| lineage3;lineage4.4.1.1 | 8 |
| lineage2.2.2;lineage3 | 1 |
| lineage1.1.1.1;lineage2.2.1;lineage2.2.2;lineage4.1 | 1 |
| lineage2.2.1;lineage4.8.1 | 1 |
| lineage1.1.2;lineage3.1.1;lineage4.3;lineage4.6.1.1 | 1 |
| lineage2.2.2;lineage4.1.1.1 | 2 |
| La1.1;lineage3 | 2 |
| lineage3.1.1;lineage4.6.3 | 2 |
| lineage3.1.1;lineage4.1.1.3 | 2 |
| lineage2.2.2;lineage4.1.2.1 | 2 |
| lineage2.2.1;lineage3.1 | 2 |
| La1.7;lineage2.2.2 | 1 |
| lineage2.1;lineage2.2.1.1;lineage3.1;lineage4.3.4 | 1 |
| lineage1.1.3.1;lineage2.2.1 | 5 |
| lineage3;lineage4.7 | 2 |
| lineage2.2.1.1;lineage4.6.2.1 | 1 |
| lineage3.1.1;lineage4.1.1.1 | 1 |
| lineage3.1;lineage4.6.1.1 | 2 |
| lineage2.2.1;lineage4.1.2;lineage4.3.3 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| lineage2.2.1.1;lineage4.3.4.2.1 | 2 |
| lineage2.2.1.1;lineage4.2.2 | 1 |
| lineage2.2;lineage3.1.1 | 1 |
| lineage1.2.2.2;lineage3;lineage4.4.1.1 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2.1 | 1 |
| lineage1.1;lineage2.2.1 | 3 |
| lineage3;lineage4.1.1.2 | 1 |
| lineage1.1.1;lineage2.2.1.1 | 1 |
| lineage2.2.2;lineage4.3.2.1 | 4 |
| lineage2.2.1.1;lineage2.2.1.2;lineage3 | 2 |
| lineage2.2;lineage3 | 3 |
| lineage2.2.1.2;lineage2.2.2 | 1 |
| lineage1.1.1.1;lineage2.2.1;lineage4.4.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage4.8 | 1 |
| lineage3.1.1;lineage4.6.1.1 | 2 |
| lineage1.1.1;lineage2.2.1;lineage4 | 2 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage2.2.1.1;lineage4.5 | 3 |
| lineage2.2.1;lineage4.1.4 | 1 |
| lineage1.2.2;lineage3.1.2 | 1 |
| lineage2.2.1.1;lineage4.3.4.1 | 1 |
| lineage2.2.1;lineage3.1.1;lineage4 | 1 |
| lineage4.4.1 | 1 |
| lineage2.2.2;lineage4.4.2 | 2 |
| lineage2.2.1;lineage4.2 | 4 |
| lineage1.2.1.2;lineage2.2.1 | 1 |
| lineage3.1.2;lineage4.1.1 | 1 |
| lineage2.2.1;lineage3;lineage4.3.2 | 1 |
| lineage3.1.3;lineage4.1.1.1 | 1 |
| lineage3.1.1;lineage4.3.3 | 6 |
| lineage3;lineage4.1.2 | 2 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| lineage1.1.2 | 1 |
| lineage1.1.2;lineage2.2.1.1 | 2 |
| lineage2.2.1;lineage3.1.2.1 | 5 |
| lineage1;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage3.1.3;lineage4.8.2 | 2 |
| lineage1.1;lineage2.2;lineage3.1.1;lineage4.2.2.2;lineage4.3.3 | 1 |
| lineage2.2;lineage4.2.2.2 | 1 |
| lineage2.2.1;lineage4.9.1 | 1 |
| lineage2.2.1.2;lineage3.1.2 | 1 |
| lineage2.1;lineage4.1.2.1 | 1 |
| lineage2.2.1;lineage4.1.2.1;lineage4.7 | 1 |
| La3;lineage3 | 2 |
| lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | 2 |
| lineage2.2.2;lineage4.5 | 3 |
| lineage2.2.1.1;lineage4.2.1 | 1 |
| lineage2.2.2;lineage4.4.1.1 | 3 |
| lineage4.4.1.1 | 1 |
| lineage2.2.1;lineage3;lineage4 | 6 |
| lineage1.1.3.1;lineage2.2.1.1 | 1 |
| lineage1;lineage2.2.1;lineage4.9 | 2 |
| La1.2;lineage3 | 1 |
| lineage2;lineage3 | 1 |
| lineage1.1.3.1;lineage2.2.1.2 | 1 |
| La3;lineage2.2.2 | 1 |
| lineage3.1.2;lineage4.3.2.1 | 2 |
| lineage2.2;lineage4.2.2;lineage4.4 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3 | 2 |
| lineage2.2.1.1;lineage4.8 | 4 |
| lineage2.2.1.1;lineage4.1.1 | 1 |
| lineage2.2.1;lineage4.4.1.2 | 2 |
| lineage1.1.1.1;lineage2.2 | 2 |
| lineage2.2.1.2;lineage3.1.2.1 | 1 |
| lineage1.1.2;lineage3.1.2.1 | 1 |
| lineage1;lineage3 | 2 |
| La1.7;lineage3 | 1 |
| lineage1.2.1.2.1;lineage3 | 1 |
| lineage2.2.1;lineage6.1.3 | 2 |
| lineage1.1.2;lineage3.1.1;lineage4.3.4.2.1 | 1 |
| lineage3;lineage4.5 | 3 |
| lineage2.2.1.1;lineage4.9 | 1 |
| lineage3.1;lineage4.9 | 1 |
| lineage1.1.2;lineage2.2.1;lineage4 | 1 |
| lineage1.1.3.2;lineage3.1.2 | 1 |
| lineage2.2.1;lineage3;lineage4.1.1.3;lineage4.9 | 1 |
| lineage2.2;lineage4.4.1.1 | 1 |
| lineage1.1.3.2;lineage2.2.1 | 1 |
| lineage1.2.2.2;lineage2.2.1;lineage3;lineage4 | 1 |
| lineage2.2.1;lineage4.6.1.2 | 1 |
| lineage2;lineage4 | 2 |
| lineage1.1;lineage3.1.2 | 1 |
| lineage2.2.1;lineage4.6 | 1 |
| lineage2.2.1;lineage5 | 1 |
| lineage3.1.3;lineage4.2.1 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| lineage2.2.1.1;lineage4.1;lineage6.1.2 | 1 |
| lineage3;lineage4.1 | 1 |
| lineage1.1.3.1;lineage3;lineage4.4.2 | 1 |
| lineage2.2.1;lineage4.1.2.1;lineage4.3.2 | 1 |
| lineage1.2.2.2;lineage3.1.2.1 | 1 |
| lineage2.2.1.1;lineage6.1.3 | 1 |
| lineage3.1;lineage4 | 1 |
| lineage4.5 | 1 |
| lineage3;lineage4.6.2 | 1 |
| lineage2.2.1;lineage4.3.1 | 1 |
| lineage2.2.1;lineage3;lineage4.2.2.2 | 1 |
| lineage1.1.2;lineage3.1.1;lineage4.6.1 | 1 |
| lineage3.1.2;lineage4.1.1.1 | 1 |
| lineage2.2;lineage4.3.3 | 1 |
| lineage3.1.2.1;lineage4.1.2 | 1 |
| lineage1.1.2;lineage3.1.1;lineage4.6.1.1 | 2 |
| lineage2.2.1;lineage3.1.2;lineage4.9 | 1 |
| lineage2.2.1;lineage3;lineage4.1.2;lineage4.2.2;lineage4.9 | 1 |
| La2;lineage2.2 | 1 |
| lineage3.1.1;lineage4.3.2.1 | 2 |
| lineage1;lineage2.2.1 | 1 |
| lineage3.1;lineage9 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage3;lineage4.3.4.2 | 3 |
| lineage2.2.1;lineage3;lineage4.9 | 1 |
| lineage2.2.1;lineage4.1.2.1;lineage4.2.2.1 | 1 |
| lineage3.1.1;lineage4.4.1.1.1 | 1 |
| lineage1.1.2;lineage3.1.1;lineage4.2.2.2 | 1 |
| La1.7;lineage2.2.1.1 | 1 |
| lineage3.1;lineage4.2.2 | 1 |
| lineage1.2.1.2;lineage3 | 1 |
| lineage2.1;lineage2.2.1;lineage4 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4.6.1 | 1 |
| lineage2.2.1;lineage4.1;lineage4.3.3 | 1 |
| lineage1.2.2.2;lineage2.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4 | 1 |
| lineage2.2.1;lineage3;lineage4.1.2.1 | 1 |
| lineage2.2.1;lineage3.1;lineage4.3.4.2.1 | 1 |
| lineage1.1.2;lineage2.2.1;lineage4.2.2.2 | 1 |
| lineage3;lineage4.3.4.2.1 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1 | 1 |
| lineage2.2.1;lineage3.1.1 | 1 |
| lineage4.8.1;lineage4.9 | 1 |
| lineage2.2.1;lineage4.1.1.3;lineage4.3.2.1 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2 | 1 |
| lineage3;lineage4.6.2.1 | 1 |
| lineage1.1.1.1;lineage2.2.1;lineage4.2.2 | 1 |
| lineage3.1.2;lineage4.1.1.3.1 | 1 |
| lineage3.1.1;lineage4.6.1.2 | 1 |
| lineage3;lineage4.4.1.2 | 1 |
| lineage3;lineage4.3.2.1 | 1 |
| lineage2.2;lineage4.5 | 1 |
| lineage2.2;lineage4 | 1 |
| lineage2.2.1.2;lineage4.3.4.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 83031 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
This table has 83031 rows and could cause your browser to crash if rendered.
