ERR11488961
|
RR-TB
|
lineage4.4.1.1.1
|
None
|
SRR29273819
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR7755683
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR25206920
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR10380070
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR29081617
|
RR-TB
|
lineage4.1.2.1
|
None
|
SRR24256334
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR4553558
|
RR-TB
|
lineage1.2.2.2
|
None
|
ERR6336692
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
SRR3743200
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
SRR3055240
|
MDR-TB
|
lineage3.1.2.1;lineage4
|
None
|
SRR29440785
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911222
|
MDR-TB
|
lineage4.2.1
|
md
|
ERR4829977
|
RR-TB
|
lineage2.2.1.1;lineage3
|
pk
|
SRR30180352
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR3287489
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR5865008
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR5865808
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1166923
|
MDR-TB
|
lineage4.7
|
None
|
ERR5866399
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11776039
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR28888046
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29539380
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR28044541
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
SRR28046073
|
MDR-TB
|
lineage3
|
None
|
SRR28888054
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11774856
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR27069402
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162810
|
MDR-TB
|
lineage4.7
|
None
|
SRR28045540
|
MDR-TB
|
lineage3
|
None
|
SRR28393607
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR10040301
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2179735
|
RR-TB
|
lineage4.2.2
|
cn
|
ERR181315
|
MDR-TB
|
lineage9
|
so
|
ERR13291060
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539023
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539290
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29914433
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29538936
|
RR-TB
|
lineage2.2.1
|
None
|
SRR30180248
|
MDR-TB
|
lineage4.5
|
None
|
ERR4831472
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR17732467
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351592
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR28045496
|
RR-TB
|
lineage1.1.2
|
None
|
ERR9120144
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR18002898
|
RR-TB
|
lineage2.2.1
|
None
|
ERR10610246
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR1063861
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR10748412
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR8025670
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10525328
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR123939
|
MDR-TB
|
lineage3
|
None
|
SRR26936971
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18665458
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR18715177
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28046044
|
MDR-TB
|
lineage3
|
None
|
ERR4809340
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR5866563
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR040129
|
MDR-TB
|
lineage3
|
ug
|
ERR144613
|
RR-TB
|
lineage4.1;lineage4.3.4.1
|
ru
|
SRR28858513
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR13284606
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1034683
|
MDR-TB
|
lineage4.1.2.1
|
co
|
ERR3794397
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864665
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12062486
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR28044764
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR13191364
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13870404
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMEA104362169
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4799983
|
Pre-XDR-TB
|
lineage3.1.2;lineage4
|
None
|
SRR10040398
|
MDR-TB
|
lineage2.1
|
None
|
ERR5865070
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7516309
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3743476
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11080889
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR11068441
|
MDR-TB
|
lineage4.7
|
None
|
ERR4797409
|
MDR-TB
|
lineage2.2.1;lineage3
|
in
|
SRR29273822
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR6807739
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6824473
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR2516287
|
MDR-TB
|
lineage4.3.3
|
be
|
ERR2510295
|
Pre-XDR-TB
|
lineage3
|
pk
|
SRR671869
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR6832793
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1049746
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR12062482
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR5865780
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5918054
|
MDR-TB
|
lineage4.4.1.1
|
za
|
SRR28044828
|
RR-TB
|
lineage1.1.2
|
None
|
ERR5865072
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797053
|
MDR-TB
|
lineage3.1.2
|
in
|
SRR10525338
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR1036288
|
MDR-TB
|
lineage4.4.1.1
|
pt
|
SRR1049573
|
MDR-TB
|
lineage3.1.2.1
|
None
|
ERR126605
|
MDR-TB
|
lineage1.2.2.2
|
mw
|
ERR11775075
|
RR-TB
|
lineage4.3.2.1;lineage4.3.3
|
None
|
ERR4831537
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR11488434
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR6866043
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR19276611
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SAMN02586056
|
MDR-TB
|
lineage2.2.1
|
za
|
ERR4831979
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR22351862
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10040356
|
Pre-XDR-TB
|
lineage4.2.2
|
None
|
SRR1723474
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR9738479
|
XDR-TB
|
lineage4.1.2.1
|
None
|
SRR25515149
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082191
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12420374
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798656
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR10748312
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10808698
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR14782224
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR13258461
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799054
|
MDR-TB
|
lineage1.2.2.2
|
in
|
SRR25905994
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11488939
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR10040522
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR2514575
|
RR-TB
|
lineage3.1.1
|
gb
|
ERR403215
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11083020
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2515710
|
RR-TB
|
lineage2.2.1
|
za
|
SRR14519106
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4799585
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR4799892
|
MDR-TB
|
lineage3
|
in
|
SRR29231544
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR4800702
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4822133
|
MDR-TB
|
lineage3
|
None
|
ERR11068326
|
MDR-TB
|
lineage4.7
|
None
|
SRR10040489
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR163947
|
MDR-TB
|
lineage1.1.2;lineage1.2.2.2
|
mw
|
SRR7341681
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR13355776
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR2467267
|
MDR-TB
|
lineage3.1.2.1;lineage4
|
None
|
SRR20969595
|
MDR-TB
|
lineage4.4.2
|
None
|
SRR28351388
|
XDR-TB
|
lineage4.2.1
|
None
|
ERR11774853
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4553679
|
MDR-TB
|
|
None
|
SRR16370488
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29539425
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR29681251
|
RR-TB
|
lineage4.8
|
None
|
SRR10040516
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4553900
|
MDR-TB
|
|
None
|
ERR11252521
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR29681348
|
MDR-TB
|
lineage4.8
|
None
|
SRR5486904
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR2510278
|
MDR-TB
|
lineage3
|
pk
|
SRR6964599
|
XDR-TB
|
lineage3
|
None
|
ERR2510347
|
MDR-TB
|
lineage3
|
pk
|
ERR2510431
|
MDR-TB
|
lineage3
|
pk
|
ERR13289014
|
RR-TB
|
lineage2.2.1
|
None
|
ERR13289308
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13286184
|
RR-TB
|
lineage4.3.2.1
|
None
|
ERR13288772
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13290773
|
Pre-XDR-TB
|
lineage4.5
|
None
|
SRR29681330
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29681466
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR29681470
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR10748419
|
RR-TB
|
lineage4.3.2.1
|
None
|
ERR2653198
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR270683
|
MDR-TB
|
lineage3.1.2.1
|
None
|
ERR5987182
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR6831739
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7516441
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29017396
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR29273693
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4829986
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR9907759
|
RR-TB
|
lineage4.3.4.1
|
None
|
SRR12062481
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR28389851
|
RR-TB
|
lineage4.3.3
|
None
|
SRR29772602
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
DRR130219
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMEA2535156
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR13232510
|
RR-TB
|
lineage2.2.1
|
None
|
SRR13583316
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR5485561
|
MDR-TB
|
lineage4.9
|
None
|
SRR14801846
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR2510651
|
MDR-TB
|
lineage3
|
pk
|
SRR21277544
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7341643
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
ERR4553953
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR7341649
|
Pre-XDR-TB
|
lineage4.4.1.1
|
ro
|
SRR7341684
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
SRR6824600
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR9613539
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR773802
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR25207257
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13276334
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR12062487
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR12062489
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR117636
|
MDR-TB
|
lineage3.1.2.1;lineage4
|
None
|
SRR15368764
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR15399236
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR4808868
|
Pre-XDR-TB
|
lineage2.2.1.1;lineage2.2.2
|
za
|
SRR29274194
|
MDR-TB
|
lineage4.1;lineage4.4.1.1
|
None
|
ERR400517
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
SRR7341682
|
Pre-XDR-TB
|
lineage4.4.1.1
|
ro
|
ERR5865009
|
MDR-TB
|
lineage4
|
None
|
ERR5865069
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16370553
|
RR-TB
|
lineage2.2.1.1
|
None
|
ERR13261333
|
XDR-TB
|
lineage4.3.4.2
|
None
|
ERR181933
|
MDR-TB
|
lineage1.2.2.2
|
mw
|
ERR4812971
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR9120042
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR2510336
|
MDR-TB
|
lineage2.2.1
|
pk
|
ERR7737924
|
MDR-TB
|
lineage2.1
|
None
|
SRR3609534
|
MDR-TB
|
lineage4.9
|
None
|
SRR12420692
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26937144
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR29017062
|
MDR-TB
|
lineage4.9
|
None
|
ERR1023421
|
RR-TB
|
lineage4.4.1.1
|
None
|
ERR1034904
|
MDR-TB
|
lineage4.4.1.1
|
pt
|
SRR1723473
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR24256225
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4797407
|
RR-TB
|
lineage3
|
in
|
SRR24799216
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
ERR11775944
|
MDR-TB
|
lineage3.1.2.1
|
None
|
SRR6824642
|
MDR-TB
|
lineage4.4.2
|
cn
|
SRR29289261
|
MDR-TB
|
lineage3
|
None
|
ERR4796496
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
SRR12062541
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR163962
|
MDR-TB
|
lineage1.2.2.2
|
mw
|
ERR9907716
|
RR-TB
|
lineage4.3.4.1
|
None
|
SRR23402849
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SAMN02414910
|
MDR-TB
|
lineage4.7
|
se
|
SRR7341654
|
Pre-XDR-TB
|
lineage4.4.1.1
|
ro
|
SRR7341699
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
ERR2600523
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR19241804
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11050397
|
RR-TB
|
lineage4.1.2.1
|
None
|
SRR24114362
|
RR-TB
|
lineage3
|
None
|
SRR1049737
|
MDR-TB
|
lineage4.1.2.1;lineage4.3.3
|
None
|
SRR7516336
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4596896
|
MDR-TB
|
lineage4.2.2
|
None
|
SRR5065596
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR7341703
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
SRR10380166
|
MDR-TB
|
lineage4.2.1
|
None
|
SAMN03246246
|
RR-TB
|
lineage2.2.1
|
cn
|
SRR29914417
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR1140626
|
RR-TB
|
lineage4.1.2.1;lineage4.3.3
|
None
|
SRR10040437
|
MDR-TB
|
lineage4.5
|
None
|
ERR4808994
|
MDR-TB
|
lineage4.3.2.1
|
za
|
SRR1723722
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813815
|
RR-TB
|
lineage4.1.2.1
|
br
|
SRR29539798
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26331635
|
RR-TB
|
lineage4.1.1.3
|
None
|
ERR4809107
|
MDR-TB
|
lineage4.3.4.1
|
za
|
SRR18715054
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR2510726
|
MDR-TB
|
lineage4.8
|
it
|
ERR3639733
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13288763
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4553791
|
MDR-TB
|
lineage4.9
|
None
|
ERR181793
|
MDR-TB
|
lineage1.2.2.2
|
mw
|
ERR4797591
|
MDR-TB
|
lineage3
|
in
|
SRR5485596
|
RR-TB
|
lineage4.9
|
None
|
ERR5865491
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR25515090
|
MDR-TB
|
lineage4.5
|
None
|
ERR551457
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR234556
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR9119846
|
RR-TB
|
lineage3.1.1
|
None
|
ERR11068118
|
RR-TB
|
lineage3.1.1
|
None
|
SRR15723241
|
RR-TB
|
lineage2.2.1
|
None
|
ERR2510728
|
MDR-TB
|
lineage4.8
|
it
|
ERR5864664
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3273162
|
MDR-TB
|
lineage1.1.3.2
|
None
|
ERR11050979
|
MDR-TB
|
lineage4.4
|
None
|
ERR11488571
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5866398
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11798657
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR7341691
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
ERR9907699
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR18715336
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR1184303
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865132
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR6831764
|
RR-TB
|
lineage2.2.1
|
None
|
SRR11972379
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR25207340
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR11775015
|
RR-TB
|
lineage4.3.2.1
|
None
|
ERR4831918
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11773754
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29273811
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR10040288
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR19241808
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13284519
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR8357447
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13289339
|
RR-TB
|
lineage4.1.2
|
None
|
SRR10040168
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR553128_ERR553127_ERR553126
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172850
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865010
|
MDR-TB
|
lineage4
|
None
|
SRR14088387
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR26937135
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10748401
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12062488
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR29093474
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR18002986
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR970449
|
RR-TB
|
lineage4.1.1.3
|
None
|
SRR24114360
|
MDR-TB
|
lineage3
|
None
|
SRR1144829
|
MDR-TB
|
lineage4.7
|
None
|
SRR5073854
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR5864666
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7645941
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR13285895
|
MDR-TB
|
lineage4.3.3
|
None
|
SAMN02414909
|
MDR-TB
|
lineage4.7
|
se
|
ERR10680112
|
MDR-TB
|
lineage4.1.3
|
None
|
ERR4832043
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR439932
|
MDR-TB
|
lineage5.1.1
|
None
|
ERR4813931
|
RR-TB
|
lineage4.1.2.1
|
None
|
ERR7737676
|
RR-TB
|
lineage1.2.2.2
|
None
|
ERR040136
|
MDR-TB
|
lineage3
|
ug
|
SRR10040543
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4829147
|
RR-TB
|
lineage4.6.2.2
|
ng
|
ERR4831527
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR245651
|
MDR-TB
|
lineage1.2.2.2
|
mw
|
ERR5864670
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831451
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR28706621
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28045048
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
SRR29289354
|
XDR-TB
|
lineage3
|
None
|
SRR5065588
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR28683944
|
RR-TB
|
lineage4.3.4.2
|
None
|
SRR28888059
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207218
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28646117
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR671841
|
MDR-TB
|
lineage2.2.1.1
|
cn
|
ERR10748370
|
RR-TB
|
lineage2.2.1
|
None
|
SRR6785276
|
MDR-TB
|
lineage4.7
|
None
|
SRR28045483
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR7585438
|
XDR-TB
|
lineage3.1.2
|
in
|
SRR6152772
|
MDR-TB
|
lineage1.2.1.2.1
|
ca
|
SRR7341655
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
SRR8651598
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR7361947
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR4800147
|
MDR-TB
|
lineage3
|
None
|
SRR29772623
|
Pre-XDR-TB
|
lineage3.1.2
|
None
|
SRR29772687
|
RR-TB
|
lineage3.1.2
|
None
|
SRR29017257
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR9119838
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR30180360
|
MDR-TB
|
lineage4.5
|
None
|
SRR25207057
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290902
|
MDR-TB
|
lineage4.5
|
None
|
ERR13291147
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2184328
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5987222
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR7516389
|
Pre-XDR-TB
|
lineage4
|
None
|
SRR29274113
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4829953
|
MDR-TB
|
lineage3
|
pk
|
SRR2024930
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR7341698
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
SRR12062490
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR12708390
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR10040410
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4553456
|
MDR-TB
|
lineage4.9
|
None
|
ERR9806890
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR13249498
|
MDR-TB
|
lineage3
|
None
|
ERR2512707
|
RR-TB
|
lineage3.1.1
|
gb
|
ERR553126
|
RR-TB
|
lineage2.2.1
|
None
|
SRR29081605
|
RR-TB
|
lineage4.1.2.1
|
None
|
SRR18054789
|
MDR-TB
|
lineage4.5
|
None
|
ERR2513129
|
RR-TB
|
lineage3.1.1
|
gb
|
SRR29273766
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR5864667
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR736807
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR24256007
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13289288
|
RR-TB
|
lineage2.2.1
|
None
|
SAMN02381048
|
MDR-TB
|
lineage4.3.3
|
ug
|
ERR8975887
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR1196527
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11972371
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11972447
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5865490
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13266165
|
Pre-XDR-TB
|
lineage1.2.2.2
|
None
|
ERR13284128
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4813955
|
RR-TB
|
lineage4.1.2.1
|
br
|
ERR4818307
|
MDR-TB
|
lineage3
|
gb
|
SRR7516388
|
Pre-XDR-TB
|
lineage2.2.1;lineage4
|
None
|
SRR29914409
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153327
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4811365
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR6807711
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR26331616
|
RR-TB
|
lineage2.2.1
|
None
|
SRR25827805
|
XDR-TB
|
lineage3.1.3
|
None
|
SRR6824568
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR11043525
|
MDR-TB
|
lineage4.4.1.1
|
None
|
SRR24255885
|
MDR-TB
|
lineage4.1.2.1;lineage4.3.3
|
None
|
SRR6824573
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR351906
|
RR-TB
|
lineage3.1.1
|
None
|
SRR10040472
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6824662
|
RR-TB
|
lineage2.2.1
|
cn
|
ERR4553726
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR4796327
|
MDR-TB
|
lineage1.2.2.2
|
in
|
ERR10748127
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR7341651
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
SRR10040262
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12062483
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR10380071
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR10525334
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR1062938
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR17732458
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832785
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
SRR3743390
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
ERR067666
|
RR-TB
|
lineage4.8
|
ru
|
ERR6397206
|
MDR-TB
|
lineage3
|
None
|
SRR1049738
|
MDR-TB
|
lineage4.1.2.1;lineage4.3.3
|
None
|
SRR25207229
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12420559
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169100
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864662
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4025132
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR6397205
|
MDR-TB
|
lineage3
|
None
|
ERR7911094
|
MDR-TB
|
lineage4.2.1
|
md
|
SRR13232648
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9117804
|
RR-TB
|
lineage3.1.1
|
None
|
SRR29538905
|
RR-TB
|
lineage2.2.1
|
None
|
ERR1035001
|
RR-TB
|
lineage1.2.2.2
|
za
|
ERR9993200
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR7517723
|
MDR-TB
|
lineage4.2.1
|
ch
|
SRR7341671
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
ERR4827794
|
RR-TB
|
lineage4.3.3
|
None
|
SRR7341685
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
SRR7755654
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR9971351
|
RR-TB
|
lineage2.2.1
|
None
|
ERR3287770
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
SRR9738476
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4829960
|
MDR-TB
|
lineage3;lineage4.5
|
pk
|
ERR10762404
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4423579
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5865954
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911005
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR10380165
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR25206914
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR26331630
|
RR-TB
|
lineage3.1.1
|
None
|
SRR25515354
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR22048474
|
RR-TB
|
lineage4.8
|
None
|
SRR6357001
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR2100176
|
MDR-TB
|
lineage3
|
None
|
SRR29016826
|
MDR-TB
|
lineage4.9
|
None
|
SRR10040253
|
MDR-TB
|
lineage4.5
|
None
|
SRR14164864
|
RR-TB
|
lineage4.3.3
|
None
|
SAMN02584590
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR4797643
|
Pre-XDR-TB
|
lineage1.1.2;lineage2.2.1
|
in
|
SRR25207312
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR181930
|
MDR-TB
|
lineage1.2.2.2
|
mw
|
ERR4812973
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
ERR13278953
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5987437
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR4827563
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488369
|
Pre-XDR-TB
|
lineage1.1.3.2
|
None
|
ERR2510468
|
RR-TB
|
lineage3
|
pk
|
ERR5917730
|
MDR-TB
|
lineage4.1.2.1
|
by
|
ERR3273086
|
RR-TB
|
lineage4.3.3
|
None
|
ERR5987253
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4813941
|
RR-TB
|
lineage4.3.4.1
|
br
|
ERR4423580
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11082156
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR22175192
|
MDR-TB
|
lineage3
|
None
|
ERR386838
|
RR-TB
|
lineage3.1.1
|
None
|
SRR22424734
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR5865779
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4832012
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR1163361
|
MDR-TB
|
lineage4.7
|
None
|
ERR9992725
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1140725
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9993259
|
XDR-TB
|
lineage2.2.1.1
|
None
|
ERR9993202
|
XDR-TB
|
lineage2.2.1.1
|
None
|
ERR2707216
|
MDR-TB
|
lineage4.3.4.1
|
cd
|
SRR12420734
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832716
|
RR-TB
|
lineage2.2.1
|
None
|
ERR7910895
|
MDR-TB
|
lineage4.2.1
|
md
|
ERR8975462
|
MDR-TB
|
lineage3.1.1
|
None
|
ERR2510564
|
MDR-TB
|
lineage3
|
None
|
ERR3132209
|
MDR-TB
|
lineage4.8
|
None
|
ERR7911008
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR2099973
|
MDR-TB
|
lineage3.1.2.1
|
None
|
SRR25207066
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4812972
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
SRR10040223
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11662188
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284822
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24255963
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
DRR130075
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488633
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR4596938
|
MDR-TB
|
lineage4.2.2
|
None
|
ERR6359014
|
RR-TB
|
lineage4.6.1.1
|
None
|
ERR4800117
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR11081954
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR108500
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR29289253
|
XDR-TB
|
lineage3
|
None
|
ERR13249497
|
MDR-TB
|
lineage3
|
None
|
ERR5864671
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN03647561
|
MDR-TB
|
lineage3.1.2.1
|
None
|
SRR29690803
|
RR-TB
|
lineage4.3.4.2
|
None
|
SRR29772682
|
MDR-TB
|
lineage3.1.2.1
|
None
|
SRR24114361
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR2024929
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR22873594
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR779679
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR4813948
|
RR-TB
|
lineage4.3.4.1
|
br
|
SRR5894881
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR017784
|
Pre-XDR-TB
|
lineage2.2.1
|
gb
|
ERR10762416
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR1146374
|
MDR-TB
|
lineage4.7
|
None
|
SAMN02381044
|
MDR-TB
|
lineage4.1.2.1;lineage4.3.3
|
ug
|
ERR13290844
|
RR-TB
|
lineage4.5
|
None
|
ERR2653084
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR5865071
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830544
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR1049574
|
MDR-TB
|
lineage3.1.2.1
|
None
|
ERR5865131
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR7592328
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR10040477
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR10040479
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040135
|
MDR-TB
|
lineage4.5
|
None
|
SRR24256091
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR7341668
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
ERR13266395
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR25207220
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864668
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR137206
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR10040342
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797016
|
Pre-XDR-TB
|
lineage3
|
in
|
ERR4829932
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
SRR26937026
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11775762
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12420536
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6356924
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR6824572
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8975533
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR4827786
|
MDR-TB
|
lineage4.7
|
None
|
ERR4829971
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR4830014
|
MDR-TB
|
lineage4.6.2.2
|
ng
|
SRR1144727
|
MDR-TB
|
lineage4.7
|
None
|
SAMN03246453
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR11662597
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20970027
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR9613545
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29017226
|
MDR-TB
|
lineage1.2.2.2
|
None
|
ERR553127
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864661
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR19276629
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR11489047
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
ERR4799047
|
RR-TB
|
lineage3
|
in
|
ERR245836
|
MDR-TB
|
lineage1.2.2.2
|
mw
|
ERR550721
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR736820
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR18665457
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR12062491
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR11662530
|
MDR-TB
|
lineage2.1
|
None
|
SRR10040250
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR9992772
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR7069287
|
RR-TB
|
lineage3.1.1
|
None
|
SRR10040162
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1723672
|
MDR-TB
|
lineage2.2.1
|
cn
|
SRR20632791
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR117697
|
MDR-TB
|
lineage3.1.2.1
|
None
|
SRR21576708
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR234564
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
ru
|
SRR20632804
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800159
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR11488587
|
RR-TB
|
lineage1.1.3.2
|
None
|
SRR29289406
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR13288822
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR19428621
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR24256305
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR7653025
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9120041
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR7910874
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR7755652
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR5865133
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR2100259
|
MDR-TB
|
lineage3.1.2.1
|
None
|
SRR10525336
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR9119538
|
MDR-TB
|
lineage4.9
|
None
|
ERR4553624
|
MDR-TB
|
lineage4.9
|
None
|
ERR13261988
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR12062485
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR3743376
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR4800044
|
MDR-TB
|
lineage3
|
in
|
ERR4811347
|
MDR-TB
|
lineage4.2.2
|
cn
|
SRR25827646
|
Pre-XDR-TB
|
lineage1.2.2.2;lineage2.2.1
|
None
|
ERR7911186
|
RR-TB
|
lineage2.2.1.1
|
vn
|
ERR4821517
|
MDR-TB
|
lineage4.8
|
gb
|
SRR25207322
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9992904
|
Pre-XDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR29273652
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4830010
|
RR-TB
|
lineage4.6.2.2
|
None
|
ERR551972
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR212054
|
MDR-TB
|
lineage1.2.2.2
|
mw
|
ERR5866397
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR161085
|
MDR-TB
|
lineage1.2.2.2
|
mw
|
ERR11068014
|
MDR-TB
|
lineage3
|
None
|
ERR2600522
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR21747002
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22248463
|
RR-TB
|
lineage4.3.3
|
None
|
ERR502396
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR144612
|
RR-TB
|
lineage4.1.2;lineage4.3.4.1;lineage4.8
|
None
|
SRR21887701
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772824
|
RR-TB
|
lineage3
|
None
|
SRR18714925
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR8357275
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11080936
|
MDR-TB
|
lineage3
|
None
|
SRR6832468
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR5865006
|
MDR-TB
|
lineage4
|
None
|
SRR29017414
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR6964563
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR29017210
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR21747028
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR7737690
|
RR-TB
|
lineage4.3.2.1
|
None
|
SRR29289108
|
MDR-TB
|
lineage3
|
None
|
SRR7516303
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4797305
|
MDR-TB
|
lineage3
|
in
|
ERR9029925
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1166093
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510596
|
RR-TB
|
lineage3
|
pk
|
SRR2101243
|
RR-TB
|
lineage3.1.1
|
None
|
ERR11069088
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR25827863
|
MDR-TB
|
lineage1.2.2.2
|
None
|
SRR7341678
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
ERR8975862
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR7516316
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7592382
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR5865011
|
MDR-TB
|
lineage4
|
None
|
ERR4827735
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11774854
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR4813848
|
Pre-XDR-TB
|
lineage4.4.1.1
|
None
|
ERR13289268
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR245670
|
MDR-TB
|
lineage1.2.2.2
|
mw
|
SRR1049745
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR12882768
|
RR-TB
|
lineage3.1.1
|
None
|
ERR11068705
|
Pre-XDR-TB
|
lineage4.2.1.1
|
None
|
SRR3743496
|
MDR-TB
|
lineage2.2;lineage4.2.1
|
None
|
ERR10680049
|
RR-TB
|
lineage5.3
|
None
|
SRR29093638
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR24256296
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1062934
|
MDR-TB
|
lineage4.1.2.1;lineage4.3.3
|
None
|
ERR11068151
|
MDR-TB
|
lineage4.7
|
None
|
ERR2307594
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284646
|
MDR-TB
|
lineage3
|
None
|
SRR10040442
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715308
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR19241809
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4872132
|
MDR-TB
|
lineage4.9
|
None
|
SRR29772390
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR9738538
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR10748523
|
RR-TB
|
lineage2.2.1
|
None
|
ERR8665865
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20970012
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23938640
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR12420632
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9120145
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR1146382
|
MDR-TB
|
lineage4.7
|
None
|
SRR6831858
|
RR-TB
|
lineage2.2.1
|
None
|
SRR7341675
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
SRR7755720
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR9806858
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR15014667
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4811041
|
RR-TB
|
lineage2.2.1
|
cn
|
SAMN02380987
|
MDR-TB
|
lineage3.1.2.1
|
ug
|
ERR4799359
|
MDR-TB
|
lineage1.2.2.2
|
in
|
SRR26936961
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4829876
|
RR-TB
|
lineage3.1.1
|
None
|
ERR5865807
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR12062544
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR7341652
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
SRR3611722
|
MDR-TB
|
lineage4.9
|
None
|
ERR10610309
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR11080938
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9634289
|
MDR-TB
|
lineage1.1.3.2
|
None
|
SRR18003046
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR040118
|
MDR-TB
|
lineage3
|
ug
|
ERR11798658
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR28239889
|
MDR-TB
|
lineage4
|
None
|
SRR26331597
|
RR-TB
|
lineage4.1.1.3
|
None
|
ERR11488955
|
Pre-XDR-TB
|
lineage4.7
|
None
|
ERR4831640
|
MDR-TB
|
lineage2.2.1
|
vn
|
DRR130152
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6485092
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR26056426
|
RR-TB
|
lineage1.1.2
|
None
|
SRR7341686
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
ERR9806863
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR10680149
|
MDR-TB
|
lineage4.1.1.1
|
None
|
ERR4829144
|
Pre-XDR-TB
|
lineage3
|
pk
|
ERR4831936
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR22424899
|
RR-TB
|
lineage4.1.2.1
|
None
|
SRR23340102
|
MDR-TB
|
lineage4.2.1.1
|
None
|
ERR11488747
|
MDR-TB
|
lineage4.7
|
None
|
SRR13423583
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23691421
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR12420797
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040140
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865007
|
Pre-XDR-TB
|
lineage4
|
None
|
ERR4797807
|
MDR-TB
|
lineage1.2.2.2
|
in
|
ERR11083080
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR6964632
|
MDR-TB
|
lineage3
|
None
|
ERR8975537
|
RR-TB
|
lineage4.3.4.2.1
|
None
|
ERR13267472
|
RR-TB
|
lineage3.1.1
|
None
|
ERR13267490
|
RR-TB
|
lineage4.6.2.2
|
None
|
SRR29385277
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR552344
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13260049
|
MDR-TB
|
lineage4.1.1
|
None
|
SRR21747047
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR5864663
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864669
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3470547
|
MDR-TB
|
lineage3
|
None
|
ERR11488552
|
RR-TB
|
lineage4.8
|
None
|
SRR1723489
|
RR-TB
|
lineage2.2.1
|
None
|
ERR9992809
|
XDR-TB
|
lineage2.2.2
|
None
|
SRR24256003
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR7341689
|
MDR-TB
|
lineage4.4.1.1
|
ro
|
ERR13258459
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813959
|
RR-TB
|
lineage4.1.2.1
|
br
|
SRR19241813
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11043492
|
RR-TB
|
lineage3.1.1
|
None
|
ERR11068476
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1723723
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1034992
|
MDR-TB
|
lineage4.3.2.1
|
za
|
SRR29289109
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR3273141
|
RR-TB
|
lineage2.1
|
None
|
ERR3324334
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR24466801
|
XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4815819
|
MDR-TB
|
lineage4.8
|
gb
|
ERR9907677
|
RR-TB
|
lineage4.3.4.1
|
None
|
SRR10397231
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865005
|
MDR-TB
|
lineage4
|
None
|
ERR9907714
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR1163320
|
MDR-TB
|
lineage4.7
|
None
|
ERR221596
|
MDR-TB
|
lineage1.2.2.2
|
mw
|
SRR16157124
|
RR-TB
|
lineage4.1.1.3
|
None
|
SRR10040317
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040432
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR17716891
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1723488
|
RR-TB
|
lineage2.2.1
|
None
|
ERR164021
|
MDR-TB
|
lineage1.2.2.2;lineage4.3.4.2.1
|
mw
|
ERR245829
|
MDR-TB
|
lineage1.2.2.2
|
mw
|