lineage | Count |
---|---|
lineage4.1.1;lineage2.2.1 | 1 |
lineage2.2.1.1 | 3 |
lineage4.3.4.2 | 15 |
lineage2.2.1 | 45 |
lineage3 | 20 |
lineage4.1.2.1 | 15 |
lineage1.2.2.2 | 12 |
lineage4.3.3 | 17 |
lineage4.4.1.1 | 5 |
4 | |
lineage4.1.3 | 2 |
lineage2.2 | 3 |
lineage4.2.1.1 | 1 |
lineage4.3.4.2.1 | 3 |
lineage3.1.2 | 3 |
lineage4.8;lineage2.2.1 | 1 |
lineage1.2.1.2.1 | 2 |
lineage3.1.1 | 3 |
lineage4.3.2.1 | 2 |
lineage1.1.2 | 5 |
lineage3.1.2.1 | 3 |
lineage2.2.2 | 3 |
lineage4.5 | 6 |
lineage4.2.2.2 | 3 |
lineage4.1.1.3 | 2 |
lineage4.1.2 | 2 |
lineage4.4.1.1.1 | 1 |
lineage4.6.2.2 | 5 |
lineage4.3.4.1 | 4 |
lineage4.2.2 | 4 |
lineage4.6.1.2 | 2 |
lineage1.1.3 | 1 |
lineage4.8 | 3 |
lineage4 | 2 |
lineage1.1.1 | 1 |
lineage4.8.2 | 1 |
lineage4.4 | 1 |
spoligotype | Count |
---|---|
None | 206 |
ID | Drug resistance | Lineage | Country iso2 | ERR8975589 | Pre-XDR-TB | lineage4.1.1;lineage2.2.1 | None | SRR5709922 | MDR-TB | lineage2.2.1.1 | th | ERR3287693 | MDR-TB | lineage4.3.4.2 | pe | ERR7911185 | MDR-TB | lineage2.2.1 | vn | ERR2517014 | Pre-XDR-TB | lineage2.2.1 | gb | ERR4797401 | Pre-XDR-TB | lineage3 | in | ERR3287773 | MDR-TB | lineage4.1.2.1 | pe | SRR6824608 | Pre-XDR-TB | lineage2.2.1 | cn | ERR552000 | MDR-TB | lineage1.2.2.2 | sz | SAMN02419617 | Pre-XDR-TB | lineage4.3.3 | by | ERR8975017 | Pre-XDR-TB | lineage1.2.2.2 | None | ERR2515637 | MDR-TB | lineage4.4.1.1 | za | DRR185042 | MDR-TB | lineage2.2.1 | vn | SRR6824476 | MDR-TB | lineage2.2.1 | cn | ERR4813961 | MDR-TB | lineage4.1.2.1 | br | SRR8651630 | MDR-TB | lineage2.2.1 | cn | ERR2677459 | MDR-TB | lineage4.1.2.1 | de | ERR4831623 | MDR-TB | lineage2.2.1 | None | SRR5485551 | MDR-TB | None | ERR4796444 | Pre-XDR-TB | lineage2.2.1 | in | ERR3335790 | MDR-TB | lineage3 | pk | SRR671789 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4811536 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4830074 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831953 | MDR-TB | lineage2.2.1 | vn | SRR5485608 | RR-TB | None | ERR4830780 | MDR-TB | lineage4.3.3 | ir | SRR6397671 | MDR-TB | lineage2.2.1.1 | ca | ERR2516245 | MDR-TB | lineage2.2.1 | be | ERR751476 | MDR-TB | lineage4.3.4.2 | pe | SRR8791243 | MDR-TB | None | ERR2516542 | MDR-TB | lineage4.1.3 | nl | ERR2516731 | MDR-TB | lineage4.3.4.2 | pe | SRR23310824 | MDR-TB | lineage2.2 | None | SRR23310920 | MDR-TB | lineage2.2 | None | SRR23340093 | MDR-TB | lineage2.2 | None | ERR2432988 | MDR-TB | lineage4.1.2.1 | br | SRR2101495 | MDR-TB | lineage4.4.1.1 | None | ERR10867786 | MDR-TB | lineage4.2.1.1 | None | SRR23691340 | RR-TB | lineage2.2.1 | None | SAMN02403589 | MDR-TB | lineage4.3.4.2.1 | za | ERR751575 | MDR-TB | lineage4.1.2.1 | pe | ERR551739 | MDR-TB | lineage1.2.2.2 | sz | ERR4830989 | Pre-XDR-TB | lineage4.3.3 | np | ERR4796838 | MDR-TB | lineage3.1.2 | in | ERR4830055 | MDR-TB | lineage4.8;lineage2.2.1 | None | SRR2101775 | MDR-TB | lineage4.4.1.1 | None | ERR3256182 | MDR-TB | lineage1.2.1.2.1 | ph | ERR4813976 | MDR-TB | lineage4.1.2.1 | br | ERR8665814 | Pre-XDR-TB | lineage4.3.3 | None | ERR4828911 | RR-TB | lineage4.1.2.1 | None | ERR4830814 | MDR-TB | lineage3.1.1 | et | ERR1035051 | RR-TB | lineage4.3.2.1 | za | ERR2513460 | Pre-XDR-TB | lineage2.2.1 | gb | ERR4798030 | Pre-XDR-TB | lineage1.1.2 | in | ERR2677404 | MDR-TB | lineage4.3.3 | de | ERR2516937 | MDR-TB | lineage3.1.2.1 | gb | SRR5709760 | Pre-XDR-TB | lineage2.2.2 | th | ERR7911002 | MDR-TB | lineage4.3.4.2 | pe | SRR6824300 | MDR-TB | lineage4.5 | cn | SAMN02231175 | MDR-TB | lineage4.1.3 | ml | ERR4813748 | MDR-TB | lineage4.1.2.1 | None | SRR5341307 | Pre-XDR-TB | lineage3 | in | SAMN02586099 | MDR-TB | lineage4.3.4.2 | za | SAMEA2534988 | MDR-TB | lineage2.2.1 | uz | ERR4831002 | Pre-XDR-TB | lineage4.2.2.2 | np | ERR2515337 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR1023520 | MDR-TB | lineage2.2.1 | None | ERR3276067 | RR-TB | lineage1.2.1.2.1 | nl | ERR4797346 | MDR-TB | lineage2.2.1.1 | in | ERR2510448 | MDR-TB | lineage1.2.2.2 | pk | ERR4809355 | MDR-TB | lineage4.1.2 | za | ERR3287432 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR4828825 | RR-TB | lineage4.1.2.1 | None | ERR7911447 | RR-TB | lineage4.4.1.1.1 | za | ERR4822380 | Pre-XDR-TB | lineage4.3.3 | kg | ERR4828857 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR6824564 | RR-TB | lineage2.2.1 | cn | ERR4829137 | RR-TB | lineage4.6.2.2 | ng | ERR4828824 | RR-TB | lineage4.1.2.1 | None | ERR2510454 | MDR-TB | lineage3 | pk | ERR551801 | MDR-TB | lineage1.2.2.2 | sz | ERR2516286 | MDR-TB | lineage4.3.3 | be | ERR4811572 | MDR-TB | lineage2.2.1 | cn | SAMN03246623 | MDR-TB | lineage4.5 | cn | ERR2707201 | MDR-TB | lineage4.6.2.2 | cd | ERR4809176 | RR-TB | lineage4.3.2.1 | za | ERR1023302 | MDR-TB | lineage3 | None | ERR3287456 | MDR-TB | lineage4.3.4.2 | pe | ERR1034881 | MDR-TB | lineage4.3.4.1 | pt | SAMN02586091 | MDR-TB | lineage3.1.1 | za | ERR158590 | MDR-TB | lineage2.2.1 | ru | ERR3287847 | MDR-TB | lineage4.3.4.2 | pe | ERR2179637 | MDR-TB | lineage4.2.2 | None | ERR3287851 | MDR-TB | lineage4.3.4.2 | pe | ERR2707053 | MDR-TB | lineage4.6.1.2 | cd | ERR2707023 | MDR-TB | lineage4.6.2.2 | cd | ERR2510563 | MDR-TB | lineage3 | pk | ERR2179634 | MDR-TB | lineage4.5 | cn | ERR4831455 | MDR-TB | lineage3 | None | ERR1035028 | MDR-TB | lineage3 | za | SRR6824670 | Pre-XDR-TB | lineage2.2.1 | cn | ERR8975757 | RR-TB | lineage3 | None | ERR2510485 | MDR-TB | lineage3 | pk | SRR7898223 | MDR-TB | lineage1.1.3 | in | SRR5709882 | MDR-TB | lineage2.2.1 | th | ERR067599 | MDR-TB | lineage4.3.3 | ru | SAMN02053764 | MDR-TB | lineage4.4.1.1 | za | ERR4798064 | RR-TB | lineage3 | in | ERR4822311 | MDR-TB | lineage4.3.3 | None | ERR7911123 | MDR-TB | lineage2.2.2 | vn | SRR6824301 | MDR-TB | lineage2.2.1 | cn | ERR2516925 | MDR-TB | lineage3.1.2.1 | gb | ERR4831462 | MDR-TB | lineage3 | None | SRR847780 | Pre-XDR-TB | lineage4.3.4.2.1 | za | ERR4830065 | MDR-TB | lineage4.8 | None | ERR144572 | MDR-TB | lineage2.2.1 | ru | SRR671720 | MDR-TB | lineage2.2.1 | cn | SRR7585422 | Pre-XDR-TB | lineage4.2.2.2 | in | ERR4797587 | Pre-XDR-TB | lineage4.2.2 | in | ERR1034678 | Pre-XDR-TB | lineage4.1.2.1 | co | ERR4822312 | MDR-TB | lineage4.3.3 | de | ERR4828823 | RR-TB | lineage4.1.2.1 | None | ERR1035034 | Pre-XDR-TB | lineage4.3.4.2.1 | za | ERR553059 | MDR-TB | lineage1.2.2.2 | sz | ERR2179648 | MDR-TB | lineage4.5 | cn | ERR4799301 | MDR-TB | lineage1.1.2 | in | SRR1724007 | MDR-TB | lineage4.2.2 | None | DRR184926 | RR-TB | lineage2.2.1 | vn | ERR3287519 | MDR-TB | lineage4 | None | SRR5485601 | MDR-TB | None | ERR5918001 | MDR-TB | lineage2.2.1 | za | ERR551523 | RR-TB | lineage4.8 | sz | ERR4831909 | MDR-TB | lineage2.2.1 | vn | ERR553021 | MDR-TB | lineage1.2.2.2 | sz | SRR5065339 | MDR-TB | lineage2.2.1 | vn | ERR4811282 | Pre-XDR-TB | lineage2.2.2 | cn | ERR4831006 | Pre-XDR-TB | lineage4.2.2.2 | np | ERR4813762 | Pre-XDR-TB | lineage4.3.4.1 | br | SRR671864 | Pre-XDR-TB | lineage2.2.1 | cn | ERR2229332 | RR-TB | lineage4.8 | None | ERR4811345 | MDR-TB | lineage2.2.1 | cn | ERR7910994 | MDR-TB | lineage4.3.4.2 | pe | ERR5918105 | RR-TB | lineage3 | za | SAMN02419660 | MDR-TB | lineage4.3.3 | by | ERR4830101 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830763 | Pre-XDR-TB | lineage4.5 | ir | SRR7517804 | MDR-TB | lineage4.3.3 | ch | ERR2510354 | MDR-TB | lineage3 | pk | ERR4796689 | Pre-XDR-TB | lineage1.1.2 | in | ERR1199128 | MDR-TB | lineage4.6.1.2 | cd | ERR234692 | MDR-TB | lineage2.2.1 | ru | ERR4822331 | MDR-TB | lineage4.3.3 | de | ERR552115 | MDR-TB | lineage1.2.2.2 | sz | ERR2041708 | MDR-TB | lineage4 | rs | ERR8665878 | MDR-TB | lineage4.3.3 | None | SAMN02053759 | MDR-TB | lineage2.2.1 | za | ERR8975761 | MDR-TB | lineage1.2.2.2 | None | SRR6044909 | MDR-TB | lineage3.1.2 | None | ERR8975716 | RR-TB | lineage3 | None | SAMN02380989 | MDR-TB | lineage3.1.1 | ug | ERR2184370 | MDR-TB | lineage4.3.4.2 | pe | ERR752118 | MDR-TB | lineage1.1.1 | th | SRR8651573 | MDR-TB | lineage2.2.1 | cn | ERR234612 | MDR-TB | lineage2.2.1 | ru | SRR1723894 | MDR-TB | lineage4.5 | cn | SRR6045984 | MDR-TB | lineage3.1.2 | gb | ERR4813978 | RR-TB | lineage4.3.4.1 | br | ERR4828833 | RR-TB | lineage4.1.2.1 | None | ERR2516514 | Pre-XDR-TB | lineage4.1.2 | pe | ERR230003 | MDR-TB | lineage4.1.2.1 | ru | ERR4798992 | Pre-XDR-TB | lineage3 | in | ERR2516491 | Pre-XDR-TB | lineage4.3.4.2 | pe | ERR2510266 | MDR-TB | lineage1.1.2 | pk | SAMN02350482 | Pre-XDR-TB | lineage1.2.2.2 | za | SAMN02414931 | Pre-XDR-TB | lineage1.2.2.2 | se | ERR4822598 | MDR-TB | lineage4.3.3 | de | SRR671863 | Pre-XDR-TB | lineage2.2.1 | cn | ERR2707096 | MDR-TB | lineage4.6.2.2 | cd | SAMN02585985 | MDR-TB | lineage4.4.1.1 | None | ERR2510324 | RR-TB | lineage3 | pk | ERR2514771 | RR-TB | lineage4.8.2 | None | ERR234137 | RR-TB | lineage2.2.1 | cn | ERR5918111 | RR-TB | lineage2.2.1 | za | ERR4829009 | MDR-TB | lineage2.2.1 | it | SRR6824597 | MDR-TB | lineage4.2.2 | cn | ERR5917764 | MDR-TB | lineage4.3.3 | by | ERR144622 | Pre-XDR-TB | lineage2.2.1 | ru | ERR4813292 | MDR-TB | lineage2.2.1 | pe | ERR2516392 | MDR-TB | lineage3 | be | ERR7911485 | MDR-TB | lineage2.2.1 | vn | ERR1034815 | Pre-XDR-TB | lineage4.3.4.1 | pt | ERR4831658 | MDR-TB | lineage2.2.1 | vn | ERR4814615 | RR-TB | lineage3.1.2.1 | gb | SAMN02350478 | Pre-XDR-TB | lineage1.2.2.2 | za | SAMN03246352 | Pre-XDR-TB | lineage2.2.1 | cn | ERR2510401 | MDR-TB | lineage3 | pk | SRR7585421 | MDR-TB | lineage4.4 | None | ERR2707017 | MDR-TB | lineage4.6.2.2 | cd | ERR4831007 | Pre-XDR-TB | lineage1.1.2 | np | ERR3148200 | MDR-TB | lineage4.3.4.2 | mx | SAMN02414893 | MDR-TB | lineage3 | se | ERR8665571 | MDR-TB | lineage4.3.3 | None | ERR8975725 | MDR-TB | lineage4.1.1.3 | None | ERR3287800 | MDR-TB | lineage4.3.4.2 | pe | ERR2516497 | MDR-TB | lineage4.3.4.2 | pe |
---|