lineage | Count |
---|---|
lineage2.2.1 | 45 |
lineage4.1.2.1 | 12 |
lineage4.6.1.2 | 3 |
lineage4.3.2 | 1 |
lineage4.8 | 2 |
lineage4.5 | 1 |
lineage4.1.1.3 | 6 |
lineage3 | 9 |
lineage2.2.1;lineage4.2.2.2 | 1 |
lineage4 | 7 |
lineage4.3.4.2.1 | 5 |
lineage3.1.2 | 2 |
lineage3;lineage4 | 1 |
lineage6 | 1 |
lineage2.2.1.1 | 3 |
lineage4.3.3 | 5 |
lineage4.2.2.2 | 3 |
lineage4.7 | 2 |
lineage1.2.2.2 | 2 |
spoligotype | Count |
---|---|
None | 111 |
ID | Drug resistance | Lineage | Country iso2 | ERR229947 | Pre-XDR-TB | lineage2.2.1 | ru | ERR2516725 | MDR-TB | lineage4.1.2.1 | nl | ERR4800303 | Pre-XDR-TB | lineage4.1.2.1 | in | ERR1199127 | MDR-TB | lineage4.6.1.2 | cd | SRR1723535 | MDR-TB | lineage2.2.1 | None | ERR4798912 | Pre-XDR-TB | lineage4.1.2.1 | in | ERR11069028 | MDR-TB | lineage4.1.2.1 | None | ERR4800424 | Pre-XDR-TB | lineage4.1.2.1 | in | SRR19276635 | MDR-TB | lineage4.3.2 | None | SRR20969956 | MDR-TB | lineage2.2.1 | None | ERR4831471 | Pre-XDR-TB | lineage4.8 | pk | ERR3639793 | Pre-XDR-TB | lineage2.2.1 | None | SRR30180267 | MDR-TB | lineage4.5 | None | ERR133867 | MDR-TB | lineage2.2.1 | ru | SRR11662273 | RR-TB | lineage2.2.1 | None | ERR4797338 | Pre-XDR-TB | lineage4.1.1.3 | in | ERR2510476 | RR-TB | lineage3 | pk | ERR229997 | MDR-TB | lineage2.2.1 | ru | ERR3335762 | MDR-TB | lineage3 | pk | SRR25827820 | Pre-XDR-TB | lineage2.2.1;lineage4.2.2.2 | None | ERR5865638 | MDR-TB | lineage2.2.1 | None | ERR5865071 | MDR-TB | lineage2.2.1 | None | SRR25206872 | MDR-TB | lineage2.2.1 | None | SRR28393954 | MDR-TB | lineage4 | None | ERR2516675 | Pre-XDR-TB | lineage2.2.1 | pe | SRR29289310 | XDR-TB | lineage3 | None | ERR4553883 | MDR-TB | lineage2.2.1 | None | ERR4798914 | Pre-XDR-TB | lineage4.1.2.1 | in | ERR4798022 | Pre-XDR-TB | lineage4.1.1.3 | in | ERR5865165 | MDR-TB | lineage2.2.1 | None | ERR4012002 | MDR-TB | lineage4.3.4.2.1 | None | SRR21887679 | Pre-XDR-TB | lineage2.2.1 | None | SRR29289421 | XDR-TB | lineage3 | None | ERR6362240 | MDR-TB | lineage4.1.1.3 | None | ERR2510637 | MDR-TB | lineage3.1.2 | pk | ERR4829940 | Pre-XDR-TB | lineage3;lineage4 | pk | ERR2707206 | MDR-TB | lineage4.6.1.2 | cd | ERR3287846 | Pre-XDR-TB | lineage4 | pe | SRR29772623 | Pre-XDR-TB | lineage3.1.2 | None | SRR29914426 | Pre-XDR-TB | lineage2.2.1 | None | ERR3806631 | MDR-TB | lineage6 | None | SRR28393624 | MDR-TB | lineage4 | None | ERR7737639 | MDR-TB | lineage2.2.1 | None | ERR5865163 | MDR-TB | lineage2.2.1 | None | ERR5865069 | MDR-TB | lineage2.2.1 | None | SRR15014607 | MDR-TB | lineage3 | None | ERR4011996 | MDR-TB | lineage4.3.4.2.1 | None | SRR20969667 | MDR-TB | lineage2.2.1 | None | SRR29096327 | MDR-TB | lineage4.3.4.2.1 | None | ERR11043175 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866594 | MDR-TB | lineage4.1.2.1 | None | SRR28393380 | Pre-XDR-TB | lineage2.2.1 | None | SAMN03246286 | MDR-TB | lineage2.2.1 | cn | ERR5865639 | MDR-TB | lineage2.2.1 | None | SRR3105788 | MDR-TB | lineage2.2.1.1 | None | SRR13232500 | Pre-XDR-TB | lineage4.3.3 | None | SRR25515368 | MDR-TB | lineage2.2.1 | None | ERR3639712 | Pre-XDR-TB | lineage2.2.1 | None | SRR28394212 | MDR-TB | lineage4 | None | ERR4813970 | RR-TB | lineage4.3.3 | br | SRR10828634 | RR-TB | lineage2.2.1 | None | ERR4553870 | MDR-TB | lineage2.2.1 | None | ERR133935 | MDR-TB | lineage2.2.1 | ru | ERR4798282 | MDR-TB | lineage3 | in | ERR2516414 | MDR-TB | lineage4 | pe | ERR5865162 | MDR-TB | lineage2.2.1 | None | ERR11044279 | MDR-TB | lineage4.1.2.1 | None | SRR25827771 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR11081121 | Pre-XDR-TB | lineage4.7 | None | ERR4832043 | MDR-TB | lineage2.2.1 | None | ERR9119771 | MDR-TB | lineage4.1.1.3 | None | SRR28045040 | Pre-XDR-TB | lineage2.2.1 | None | SRR28394271 | Pre-XDR-TB | lineage4 | None | ERR4831465 | Pre-XDR-TB | lineage4.8 | None | ERR117462 | Pre-XDR-TB | lineage2.2.1 | ru | ERR2706996 | RR-TB | lineage3 | cd | SRR24673509 | MDR-TB | lineage2.2.1 | None | SRR29539783 | Pre-XDR-TB | lineage2.2.1 | None | ERR13260054 | MDR-TB | lineage3 | None | SRR15014789 | MDR-TB | lineage1.2.2.2 | None | ERR5865512 | MDR-TB | lineage4.1.2.1 | None | ERR11043176 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865072 | MDR-TB | lineage2.2.1 | None | ERR2515615 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR5865642 | MDR-TB | lineage2.2.1 | None | ERR4831005 | Pre-XDR-TB | lineage4.2.2.2 | np | ERR11043661 | MDR-TB | lineage4.3.3 | None | SRR29096834 | MDR-TB | lineage4.3.4.2.1 | None | ERR3287719 | MDR-TB | lineage2.2.1 | pe | ERR5865164 | MDR-TB | lineage2.2.1 | None | ERR553133 | Pre-XDR-TB | lineage2.2.1 | None | ERR4813444 | MDR-TB | lineage2.2.1 | pe | SRR13232771 | Pre-XDR-TB | lineage4.3.3 | None | SRR13232467 | Pre-XDR-TB | lineage4.3.3 | None | SRR29231781 | MDR-TB | lineage4.6.1.2 | None | ERR13285158 | Pre-XDR-TB | lineage4.7 | None | SRR29017634 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR29093995 | MDR-TB | lineage4.3.4.2.1 | None | SRR24673552 | MDR-TB | lineage4.1.2.1 | None | ERR5865643 | MDR-TB | lineage2.2.1 | None | SRR29017289 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR2516541 | Pre-XDR-TB | lineage4 | pe | SRR29289118 | MDR-TB | lineage3 | None | ERR11080918 | MDR-TB | lineage4.1.2.1 | None | SRR671748 | MDR-TB | lineage2.2.1 | cn | SRR6824677 | MDR-TB | lineage2.2.1 | cn | ERR4809071 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR5865513 | MDR-TB | lineage4.1.2.1 | None | ERR2516757 | Pre-XDR-TB | lineage4.2.2.2 | gb | SRR24114344 | MDR-TB | lineage1.2.2.2 | None | ERR5865070 | MDR-TB | lineage2.2.1 | None |
---|