lineage | Count |
---|---|
lineage4.1.2.1 | 13 |
lineage2.2.1 | 98 |
lineage4.6.2.2 | 22 |
lineage2.2.2 | 14 |
lineage1.2.1.2.1 | 3 |
lineage4.1.1.3 | 8 |
lineage1.1.2 | 6 |
lineage4.1.3 | 5 |
lineage4.3.4.2.1 | 2 |
lineage4.4.2 | 11 |
lineage4 | 3 |
lineage4.6.1.2 | 3 |
lineage1.2.2.1 | 3 |
lineage4.3.3 | 13 |
lineage4.1.1.2 | 1 |
lineage1.1.1 | 5 |
lineage3.1.3 | 1 |
lineage1.1.3.3 | 1 |
lineage4.1.1 | 12 |
lineage1.2.2.2 | 7 |
lineage1.2.2.2;lineage4.3.3 | 1 |
lineage3 | 6 |
lineage4.3.2.1 | 3 |
lineage4.1.2 | 3 |
lineage4.8 | 21 |
lineage1.1.1.1 | 1 |
lineage4.5 | 5 |
lineage4.4.1.1.1 | 2 |
lineage4.4.1.1 | 5 |
lineage1.2.2.2;lineage2.2.1 | 1 |
lineage4.2.1.1 | 3 |
lineage4.2.2.1 | 3 |
lineage2.2.1.1 | 4 |
lineage1.1.3.1 | 2 |
lineage4.7 | 1 |
lineage4.6.1.1 | 2 |
lineage4.2.2.2 | 1 |
lineage2.2.2;lineage4 | 1 |
lineage1.2.1.2.1;lineage2.2.1 | 1 |
lineage1.2.2.2;lineage2.2.1;lineage3;lineage4.9 | 1 |
lineage4.1.1.1 | 3 |
lineage4.1.4 | 1 |
lineage5.1.3 | 2 |
lineage4.2.1 | 1 |
lineage4.9 | 2 |
lineage1.2.1.1 | 1 |
1 | |
lineage3.1.2 | 1 |
lineage3.1.2.1 | 1 |
lineage2.2.1;lineage4.9 | 2 |
lineage4.3.4.1 | 2 |
lineage6.1.1 | 1 |
spoligotype | Count |
---|---|
None | 316 |
ID | Drug resistance | Lineage | Country iso2 | ERR11043132 | MDR-TB | lineage4.1.2.1 | None | SRR25207335 | MDR-TB | lineage2.2.1 | None | ERR369656 | MDR-TB | lineage4.6.2.2 | None | ERR3132087 | MDR-TB | lineage2.2.2 | None | ERR11044008 | MDR-TB | lineage1.2.1.2.1 | None | ERR8976079 | MDR-TB | lineage4.1.2.1 | None | SRR16058703 | MDR-TB | lineage4.1.1.3 | None | ERR4553763 | MDR-TB | lineage2.2.1 | None | ERR8975797 | RR-TB | lineage2.2.1 | None | ERR4829932 | Pre-XDR-TB | lineage1.1.2 | None | ERR2512718 | Pre-XDR-TB | lineage2.2.1 | gb | ERR4811605 | MDR-TB | lineage2.2.1 | cn | SRR6045391 | Pre-XDR-TB | lineage2.2.1 | None | SRR7517789 | MDR-TB | lineage4.1.3 | ci | ERR2433007 | MDR-TB | lineage4.3.4.2.1 | None | ERR2517035 | Pre-XDR-TB | lineage2.2.1 | gb | ERR502356 | MDR-TB | lineage4.6.2.2 | None | ERR9124904 | MDR-TB | lineage4.1.1.3 | None | ERR11043769 | MDR-TB | lineage4.4.2 | None | SRR7068912 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553721 | MDR-TB | lineage4 | None | ERR6358871 | MDR-TB | lineage4.6.1.2 | None | ERR4423736 | RR-TB | lineage1.2.2.1 | None | SRR1169158 | Pre-XDR-TB | lineage2.2.1 | None | SRR7517770 | MDR-TB | lineage4.3.3 | pe | ERR2515323 | RR-TB | lineage4.1.1.2 | za | SRR25207333 | Pre-XDR-TB | lineage4.4.2 | None | ERR369654 | MDR-TB | lineage4.6.2.2 | None | SRR11662687 | MDR-TB | lineage1.1.1 | None | ERR11043821 | MDR-TB | lineage3.1.3 | None | SRR6855830 | MDR-TB | lineage4.1.1.3 | None | ERR4811352 | MDR-TB | lineage2.2.1 | cn | SRR28045652 | MDR-TB | lineage1.1.3.3 | None | SRR28045834 | MDR-TB | lineage2.2.1 | None | SRR28393322 | MDR-TB | lineage4.1.1 | None | ERR11252699 | RR-TB | lineage1.2.2.2 | None | ERR11252409 | RR-TB | lineage1.2.2.2;lineage4.3.3 | None | SRR28393315 | MDR-TB | lineage4.3.3 | None | SRR28045030 | MDR-TB | lineage3 | None | ERR8699820 | RR-TB | lineage4.3.2.1 | None | ERR4828815 | Pre-XDR-TB | lineage4.1.2 | None | SRR8651663 | Pre-XDR-TB | lineage2.2.1 | cn | DRR195466 | Pre-XDR-TB | lineage2.2.2 | None | SRR1175470 | Pre-XDR-TB | lineage4.8 | ro | ERR6866073 | MDR-TB | lineage4.3.3 | None | SRR6045245 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2516834 | MDR-TB | lineage4.6.2.2 | gb | ERR779919 | MDR-TB | lineage4.1.1 | pe | SRR11662605 | MDR-TB | lineage1.1.1.1 | None | SRR6930923 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR23691413 | Pre-XDR-TB | lineage4.5 | None | SRR12142361 | Pre-XDR-TB | lineage2.2.1 | None | ERR2517036 | Pre-XDR-TB | lineage2.2.1 | gb | SRR22528581 | MDR-TB | lineage4.1.2.1 | None | ERR8975795 | MDR-TB | lineage2.2.1 | None | SRR1165592 | MDR-TB | lineage4.8 | None | ERR1035014 | MDR-TB | lineage2.2.2 | za | SRR25389530 | MDR-TB | lineage2.2.2 | None | SRR21887722 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797481 | Pre-XDR-TB | lineage3 | in | ERR2515881 | MDR-TB | lineage4.1.1.3 | za | SRR2100880 | RR-TB | lineage2.2.1 | None | ERR11488442 | MDR-TB | lineage4.4.1.1.1 | None | ERR11081851 | MDR-TB | lineage4.4.1.1 | None | ERR2514646 | Pre-XDR-TB | lineage2.2.1 | gb | SRR1166710 | MDR-TB | lineage4.8 | None | SRR25827479 | XDR-TB | lineage1.2.2.2;lineage2.2.1 | None | SRR6046243 | Pre-XDR-TB | lineage2.2.1 | gb | ERR3639812 | MDR-TB | lineage4.8 | None | SRR5709859 | MDR-TB | lineage2.2.1 | th | SRR1166154 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798347 | Pre-XDR-TB | lineage1.1.2 | in | SRR10379969 | MDR-TB | lineage2.2.1 | None | ERR1213857 | MDR-TB | lineage2.2.2 | kr | ERR8774374 | MDR-TB | lineage4.2.1.1 | None | ERR2512930 | Pre-XDR-TB | lineage2.2.1 | gb | SRR21576693 | MDR-TB | lineage4.5 | None | ERR768019 | RR-TB | lineage1.1.2 | th | ERR551910 | MDR-TB | lineage2.2.1 | None | SRR16915730 | RR-TB | lineage4.1.1.3 | None | ERR11082637 | MDR-TB | lineage4.4.1.1 | None | SRR20969588 | MDR-TB | lineage2.2.1 | None | ERR4800416 | MDR-TB | lineage2.2.1 | in | ERR040132 | MDR-TB | lineage4.3.3 | ug | SRR1723822 | RR-TB | lineage2.2.1 | cn | SRR25827606 | Pre-XDR-TB | lineage2.2.1 | None | DRR213597 | MDR-TB | lineage2.2.2 | None | ERR502304 | MDR-TB | lineage4.6.2.2 | None | ERR8774373 | MDR-TB | lineage4.2.1.1 | None | ERR3287675 | RR-TB | lineage4.1.1.3 | pe | ERR369756 | MDR-TB | lineage4.6.2.2 | None | ERR6358858 | MDR-TB | lineage4.6.1.2 | None | ERR2515482 | RR-TB | lineage4.8 | None | ERR2652916 | MDR-TB | lineage4.1.1 | None | ERR8773551 | MDR-TB | lineage4.2.2.1 | None | ERR2433003 | MDR-TB | lineage4.3.4.2.1 | br | ERR4811353 | Pre-XDR-TB | lineage4.4.2 | cn | ERR9119535 | MDR-TB | lineage4.6.2.2 | None | SRR24256218 | MDR-TB | lineage4.1.2.1 | None | ERR11488755 | MDR-TB | lineage2.2.1 | None | DRR130115 | MDR-TB | lineage4.4.2 | None | SRR832999 | RR-TB | lineage2.2.1 | None | SRR26159061 | MDR-TB | lineage2.2.1 | None | ERR11043265 | MDR-TB | lineage4.8 | None | ERR4797289 | MDR-TB | lineage2.2.1.1 | in | SRR6797474 | MDR-TB | lineage1.1.3.1 | None | ERR7737711 | MDR-TB | lineage4.1.1.3 | None | SRR26159045 | Pre-XDR-TB | lineage2.2.1 | None | ERR369715 | MDR-TB | lineage4.6.2.2 | None | SRR12142408 | Pre-XDR-TB | lineage2.2.1 | None | ERR11081439 | RR-TB | lineage4.7 | None | ERR8975046 | MDR-TB | lineage1.2.2.1 | None | SRR11662345 | MDR-TB | lineage1.1.1 | None | SRR2100026 | MDR-TB | lineage2.2.1 | None | ERR751934 | RR-TB | lineage2.2.1 | th | SRR19276637 | MDR-TB | lineage4.3.3 | None | SRR6831831 | MDR-TB | lineage2.2.1 | None | SRR20969453 | MDR-TB | lineage4.4.2 | None | SRR7781511 | MDR-TB | lineage4.1.3 | None | ERR11488541 | MDR-TB | lineage2.2.1 | None | SAMN02053743 | RR-TB | lineage2.2.1 | za | SRR21576666 | MDR-TB | lineage4.4.2 | None | SRR25207265 | Pre-XDR-TB | lineage2.2.1 | None | ERR752289 | MDR-TB | lineage1.1.1 | th | ERR11044257 | MDR-TB | lineage4.8 | None | SRR11662486 | MDR-TB | lineage1.1.1 | None | ERR5758400 | MDR-TB | lineage2.2.2 | None | ERR1034796 | RR-TB | lineage4.1.2.1 | pe | ERR6358918 | RR-TB | lineage4.6.1.1 | None | SRR22251614 | RR-TB | lineage2.2.1 | None | ERR11465075 | MDR-TB | lineage1.2.2.2 | None | DRR130146 | MDR-TB | lineage2.2.2 | None | SRR1643048 | RR-TB | lineage4.1.2.1 | None | ERR2677395 | MDR-TB | lineage4.1.2.1 | de | ERR502404 | MDR-TB | lineage4.6.2.2 | None | SRR22528525 | MDR-TB | lineage4.3.3 | None | SRR671770 | Pre-XDR-TB | lineage2.2.1 | cn | SRR1165512 | MDR-TB | lineage4.8 | None | ERR2516517 | MDR-TB | lineage4.1.1 | pe | ERR2514137 | Pre-XDR-TB | lineage2.2.1 | None | ERR2515143 | MDR-TB | lineage4.1.1 | za | ERR1034659 | MDR-TB | lineage4.4.1.1 | bg | SRR12420394 | MDR-TB | lineage2.2.1 | None | ERR3287600 | MDR-TB | lineage4.8 | pe | SRR23252659 | Pre-XDR-TB | lineage4.2.2.2 | None | ERR270780 | RR-TB | lineage2.2.1 | None | SRR1013630 | Pre-XDR-TB | lineage2.2.2;lineage4 | None | ERR11773731 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR28045435 | MDR-TB | lineage2.2.1.1 | None | SRR28393352 | MDR-TB | lineage4.3.3 | None | SRR28044806 | RR-TB | lineage1.2.2.2 | None | ERR11252559 | RR-TB | lineage1.2.2.2 | None | ERR2510621 | MDR-TB | lineage3 | pk | ERR2510647 | Pre-XDR-TB | lineage3 | pk | ERR2517085 | MDR-TB | lineage4.6.2.2 | gb | SRR1166922 | MDR-TB | lineage4.8 | None | ERR11080956 | MDR-TB | lineage4.8 | None | ERR8699100 | RR-TB | lineage4.3.2.1 | None | SRR21576590 | MDR-TB | lineage4.5 | None | ERR8975063 | MDR-TB | lineage4.3.2.1 | None | ERR4813691 | Pre-XDR-TB | lineage4.1.1 | None | SRR6982240 | RR-TB | lineage2.2.1 | None | SRR26112232 | MDR-TB | lineage1.2.1.2.1 | None | ERR4830361 | MDR-TB | lineage1.2.1.2.1;lineage2.2.1 | vn | ERR11082937 | MDR-TB | lineage4.8 | None | ERR11798649 | Pre-XDR-TB | lineage4.2.1.1 | None | SRR19276634 | MDR-TB | lineage4.3.3 | None | ERR8773550 | MDR-TB | lineage4.2.2.1 | None | ERR3132151 | XDR-TB | lineage4.1.2.1 | None | SRR6824683 | MDR-TB | lineage4.4.2 | cn | SAMN02414844 | MDR-TB | lineage4.8 | se | SRR25827614 | Pre-XDR-TB | lineage1.2.2.2;lineage2.2.1;lineage3;lineage4.9 | None | SRR25207267 | Pre-XDR-TB | lineage4.5 | None | ERR9634300 | MDR-TB | lineage2.2.1 | None | ERR11488833 | MDR-TB | lineage4.4.1.1.1 | None | SRR2100757 | RR-TB | lineage2.2.1 | None | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | ERR11489022 | Pre-XDR-TB | lineage4.1.1.1 | None | ERR5987269 | MDR-TB | lineage2.2.1 | None | SRR12420481 | MDR-TB | lineage2.2.1 | None | ERR10680112 | MDR-TB | lineage4.1.3 | None | SRR16588744 | Pre-XDR-TB | lineage2.2.1 | None | SRR21747005 | MDR-TB | lineage2.2.1.1 | None | ERR4812279 | RR-TB | lineage4.1.4 | None | ERR046933 | MDR-TB | lineage5.1.3 | gb | ERR5865913 | MDR-TB | lineage4.2.1 | None | SRR26111997 | MDR-TB | lineage1.2.1.2.1 | None | SRR1723667 | MDR-TB | lineage2.2.1 | cn | ERR2513104 | Pre-XDR-TB | lineage2.2.1 | gb | ERR4872108 | MDR-TB | lineage4.1.2.1 | None | ERR4872053 | MDR-TB | lineage4.6.2.2 | None | ERR5865625 | MDR-TB | lineage4.8 | None | ERR1213904 | XDR-TB | lineage4.1.2.1 | pe | ERR4553434 | MDR-TB | lineage2.2.1 | None | SRR5535708 | MDR-TB | lineage4.1.3 | None | SRR22424941 | Pre-XDR-TB | lineage1.1.2 | None | ERR752249 | MDR-TB | lineage1.1.1 | th | SAMN02414877 | MDR-TB | lineage4.8 | se | SRR5341274 | Pre-XDR-TB | lineage1.2.2.2 | in | ERR9120029 | MDR-TB | lineage2.2.1 | None | ERR4812881 | MDR-TB | lineage4.3.3 | pe | ERR4553648 | MDR-TB | lineage1.1.3.1 | None | SRR6045824 | Pre-XDR-TB | lineage2.2.1 | gb | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | ERR2184309 | MDR-TB | lineage4.9 | pe | ERR2517094 | MDR-TB | lineage4.6.2.2 | gb | ERR2179651 | MDR-TB | lineage4.4.2 | cn | SRR3675285 | Pre-XDR-TB | lineage2.2.1 | gb | SRR22251250 | MDR-TB | lineage2.2.1.1 | None | SRR22536488 | Pre-XDR-TB | lineage4.1.1 | None | ERR1034797 | RR-TB | lineage4.1.2.1 | pe | ERR369721 | MDR-TB | lineage4.6.2.2 | None | ERR11082174 | MDR-TB | lineage2.2.1 | None | SRR11662393 | MDR-TB | lineage2.2.1 | None | SRR7069280 | Pre-XDR-TB | lineage2.2.1 | None | SRR7517778 | MDR-TB | lineage2.2.1 | th | ERR369733 | MDR-TB | lineage4.6.2.2 | None | SRR24710192 | MDR-TB | lineage2.2.1 | None | SRR21887701 | Pre-XDR-TB | lineage2.2.1 | None | SRR1162828 | MDR-TB | lineage4.8 | None | SRR19276640 | Pre-XDR-TB | lineage4.1.1 | None | ERR046918 | RR-TB | lineage5.1.3 | gb | ERR2515857 | RR-TB | lineage4.4.1.1 | za | ERR234562 | MDR-TB | lineage2.2.1 | ru | ERR4813032 | RR-TB | lineage4.1.1.3 | pe | ERR2179676 | MDR-TB | lineage4.5 | cn | ERR4797028 | Pre-XDR-TB | lineage1.1.2 | in | SRR12142318 | Pre-XDR-TB | lineage2.2.1 | None | ERR9120028 | MDR-TB | lineage2.2.1 | None | ERR2516357 | MDR-TB | lineage4.8 | be | SAMEA2534283 | MDR-TB | lineage2.2.1 | uz | SRR1165544 | MDR-TB | lineage4.8 | None | ERR9634303 | MDR-TB | lineage2.2.1 | None | SRR11662495 | MDR-TB | lineage2.2.1 | None | ERR7902767 | MDR-TB | lineage1.2.1.1 | None | SAMN02584619 | Pre-XDR-TB | lineage2.2.1 | md | SRR1165600 | MDR-TB | lineage4.8 | None | ERR2516987 | MDR-TB | lineage4.6.2.2 | gb | SRR28394220 | MDR-TB | lineage4.1.1 | None | ERR11776033 | RR-TB | lineage4.1.2 | None | ERR4553459 | MDR-TB | None | SRR28044434 | MDR-TB | lineage3 | None | SRR28046265 | MDR-TB | lineage3.1.2 | None | SRR28394031 | MDR-TB | lineage4.3.3 | None | ERR4828894 | MDR-TB | lineage4.1.3 | None | SRR8651589 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4813206 | Pre-XDR-TB | lineage4.1.1 | pe | ERR751451 | Pre-XDR-TB | lineage4.1.1 | pe | ERR2517037 | RR-TB | lineage2.2.1 | gb | ERR9634299 | MDR-TB | lineage2.2.1 | None | ERR11069002 | MDR-TB | lineage4.2.2.1 | None | ERR2515745 | MDR-TB | lineage2.2.1 | za | ERR551909 | MDR-TB | lineage2.2.1 | None | ERR4798194 | MDR-TB | lineage1.2.2.2 | in | SRR11662247 | MDR-TB | lineage2.2.1 | None | ERR4025079 | MDR-TB | lineage4.3.3 | None | SRR11662411 | MDR-TB | lineage2.2.1 | None | SRR26936926 | MDR-TB | lineage2.2.1 | None | ERR4553419 | MDR-TB | lineage4 | None | ERR6358863 | MDR-TB | lineage4.6.1.2 | None | ERR551909_ERR551910 | MDR-TB | lineage2.2.1 | None | ERR2517028 | MDR-TB | lineage4.6.2.2 | gb | SRR3732580 | MDR-TB | lineage4.3.3 | None | SRR5837711 | MDR-TB | lineage2.2.2 | th | ERR2513850 | Pre-XDR-TB | lineage2.2.1 | gb | ERR4553478 | MDR-TB | lineage4 | None | SRR10808328 | MDR-TB | lineage4.9 | None | ERR9119514 | MDR-TB | lineage4.1.2.1 | None | SRR7070092 | Pre-XDR-TB | lineage2.2.1 | None | ERR11080892 | MDR-TB | lineage3 | None | ERR1413476 | MDR-TB | lineage4.6.2.2 | None | SRR7069788 | Pre-XDR-TB | lineage2.2.1 | None | SRR12420359 | MDR-TB | lineage2.2.1 | None | SRR10869036 | MDR-TB | lineage2.2.1 | None | ERR5865626 | MDR-TB | lineage4.8 | None | ERR266539 | RR-TB | lineage2.2.1 | None | SRR26159060 | Pre-XDR-TB | lineage2.2.1 | None | DRR195465 | Pre-XDR-TB | lineage2.2.2 | None | SRR6964651 | RR-TB | lineage3.1.2.1 | None | SRR12420747 | Pre-XDR-TB | lineage2.2.1 | None | ERR552486 | MDR-TB | lineage2.2.1;lineage4.9 | None | SRR1162720 | MDR-TB | lineage4.8 | None | SRR22536495 | Pre-XDR-TB | lineage4.1.1 | None | ERR4800116 | Pre-XDR-TB | lineage4.3.3 | None | ERR6358854 | RR-TB | lineage4.6.1.1 | None | ERR4011072 | MDR-TB | lineage2.2.1 | None | SRR10828188 | MDR-TB | lineage2.2.2 | None | DRR130202 | Pre-XDR-TB | lineage2.2.2 | None | ERR1227518 | RR-TB | lineage4.1.2.1 | None | ERR4822345 | MDR-TB | lineage4.4.2 | None | ERR4872129 | MDR-TB | lineage4.6.2.2 | None | ERR11466074 | RR-TB | lineage1.2.2.1 | None | ERR2516758 | MDR-TB | lineage4.6.2.2 | gb | ERR2516659 | MDR-TB | lineage4.1.2 | nl | SRR610905 | MDR-TB | lineage2.2.1;lineage4.9 | None | SRR6824289 | MDR-TB | lineage2.2.1 | cn | SRR12142333 | Pre-XDR-TB | lineage2.2.1 | None | ERR11080947 | MDR-TB | lineage4.4.2 | None | ERR502272 | MDR-TB | lineage4.6.2.2 | None | SRR611020 | Pre-XDR-TB | lineage2.2.1 | None | ERR2517021 | MDR-TB | lineage4.6.2.2 | gb | SRR1723983 | MDR-TB | lineage4.4.2 | cn | SRR19324986 | MDR-TB | lineage4.3.4.1 | None | ERR403345 | RR-TB | lineage2.2.1 | None | ERR9119463 | MDR-TB | lineage4.6.2.2 | None | SRR1013629 | Pre-XDR-TB | lineage2.2.2 | None | ERR4800101 | MDR-TB | lineage4.1.1.1 | None | SRR6824372 | RR-TB | lineage2.2.1 | cn | ERR439972 | MDR-TB | lineage6.1.1 | None | ERR9907715 | MDR-TB | lineage4.1.1.1 | None | SRR24827308 | MDR-TB | lineage4.3.4.1 | None | SRR4423173 | Pre-XDR-TB | lineage2.2.1 | None | SRR833143 | RR-TB | lineage2.2.1 | None | ERR11465489 | RR-TB | lineage1.1.2 | None | SRR25206874 | MDR-TB | lineage2.2.1 | None | ERR8975853 | MDR-TB | lineage2.2.1 | None |
---|