lineage | Count |
---|---|
lineage4.3.3 | 13 |
lineage4.8 | 19 |
lineage4.4.2 | 10 |
lineage4.1.4 | 1 |
lineage4.1.1 | 13 |
lineage2.2.1 | 72 |
lineage4.2.1 | 1 |
lineage4.6.1.1 | 2 |
lineage4.6.1.2 | 4 |
lineage1.1.1 | 2 |
lineage1.1.2 | 5 |
lineage4.2.2.1 | 3 |
lineage4.1.1.3 | 7 |
lineage1.2.1.1 | 1 |
lineage4.3.2.1 | 3 |
lineage1.2.2.1 | 2 |
lineage4.2.1.1 | 2 |
lineage4.6.2.2 | 22 |
lineage4.1.2.1 | 12 |
lineage2.2 | 2 |
5 | |
lineage4.9 | 3 |
lineage4 | 6 |
lineage4.3.4.1 | 1 |
lineage4.5 | 6 |
lineage2.2.1.1 | 2 |
lineage3 | 4 |
lineage4.4.1.1 | 4 |
lineage4.7 | 1 |
lineage2.2.2 | 9 |
lineage3.1.1 | 1 |
lineage4.3.4.2.1 | 2 |
lineage4.1.1.2 | 1 |
lineage1.2.2.2 | 3 |
lineage4.1.2 | 2 |
lineage4.1.3 | 5 |
lineage1.1.3.1 | 1 |
lineage3.1.2.1 | 1 |
lineage5.1.3 | 2 |
lineage3.1.3 | 1 |
lineage1.2.1.2.1 | 1 |
spoligotype | Count |
---|---|
None | 257 |
ID | Drug resistance | Lineage | Country iso2 | ERR4800116 | Pre-XDR-TB | lineage4.3.3 | None | ERR5865625 | MDR-TB | lineage4.8 | None | ERR4811353 | Pre-XDR-TB | lineage4.4.2 | cn | ERR4812279 | RR-TB | lineage4.1.4 | None | ERR4800101 | MDR-TB | lineage4.1.1 | None | ERR4800416 | MDR-TB | lineage2.2.1 | in | ERR4811352 | MDR-TB | lineage2.2.1 | cn | ERR4811605 | MDR-TB | lineage2.2.1 | cn | ERR5865626 | MDR-TB | lineage4.8 | None | ERR5865913 | MDR-TB | lineage4.2.1 | None | ERR5987269 | MDR-TB | lineage2.2.1 | None | ERR6358854 | RR-TB | lineage4.6.1.1 | None | ERR6358871 | MDR-TB | lineage4.6.1.2 | None | ERR6358918 | RR-TB | lineage4.6.1.1 | None | ERR6358863 | MDR-TB | lineage4.6.1.2 | None | ERR6358858 | MDR-TB | lineage4.6.1.2 | None | ERR6359033 | MDR-TB | lineage4.6.1.2 | None | ERR6866073 | MDR-TB | lineage4.3.3 | None | ERR752249 | MDR-TB | lineage1.1.1 | th | ERR751451 | Pre-XDR-TB | lineage4.1.1 | pe | ERR751934 | RR-TB | lineage2.2.1 | th | ERR768019 | RR-TB | lineage1.1.2 | th | ERR752289 | MDR-TB | lineage1.1.1 | th | ERR8773551 | MDR-TB | lineage4.2.2.1 | None | ERR7737711 | MDR-TB | lineage4.1.1.3 | None | ERR775322 | Pre-XDR-TB | lineage4.1.1 | pe | ERR7902767 | MDR-TB | lineage1.2.1.1 | None | ERR8699820 | RR-TB | lineage4.3.2.1 | None | ERR8773550 | MDR-TB | lineage4.2.2.1 | None | ERR779919 | MDR-TB | lineage4.1.1 | pe | ERR8699100 | RR-TB | lineage4.3.2.1 | None | ERR8773874 | Pre-XDR-TB | lineage4.3.3 | None | ERR8975795 | MDR-TB | lineage2.2.1 | None | ERR8975046 | MDR-TB | lineage1.2.2.1 | None | ERR8774374 | MDR-TB | lineage4.2.1.1 | None | ERR8774373 | MDR-TB | lineage4.2.1.1 | None | ERR8975063 | MDR-TB | lineage4.3.2.1 | None | ERR8975797 | RR-TB | lineage2.2.1 | None | ERR9120029 | MDR-TB | lineage2.2.1 | None | ERR8975853 | MDR-TB | lineage2.2.1 | None | ERR9119463 | MDR-TB | lineage4.6.2.2 | None | ERR9119535 | MDR-TB | lineage4.6.2.2 | None | ERR9120028 | MDR-TB | lineage2.2.1 | None | ERR8976079 | MDR-TB | lineage4.1.2.1 | None | ERR9119514 | MDR-TB | lineage4.1.2.1 | None | ERR9634303 | MDR-TB | lineage2.2.1 | None | ERR9634299 | MDR-TB | lineage2.2.1 | None | ERR9124904 | MDR-TB | lineage4.1.1.3 | None | ERR9634300 | MDR-TB | lineage2.2.1 | None | SRR1013630 | Pre-XDR-TB | lineage2.2 | None | SRR1013629 | Pre-XDR-TB | lineage2.2 | None | ERR9907715 | MDR-TB | lineage4.1.1 | None | SRR10379969 | MDR-TB | lineage2.2.1 | None | SRR1049027 | Pre-XDR-TB | None | SRR10808328 | MDR-TB | lineage4.9 | None | SRR1049026 | Pre-XDR-TB | None | SRR10869036 | MDR-TB | lineage2.2.1 | None | SRR1165592 | MDR-TB | lineage4.8 | None | SRR1162720 | MDR-TB | lineage4.8 | None | SRR1165544 | MDR-TB | lineage4 | None | SRR1162828 | MDR-TB | lineage4.8 | None | SRR1165512 | MDR-TB | lineage4.8 | None | SRR1165600 | MDR-TB | lineage4 | None | SRR1166154 | Pre-XDR-TB | lineage2.2.1 | None | SRR1166922 | MDR-TB | lineage4.8 | None | SRR1166710 | MDR-TB | lineage4.8 | None | SRR12142361 | Pre-XDR-TB | lineage2.2.1 | None | SRR1169158 | Pre-XDR-TB | lineage2.2.1 | None | SRR1175470 | Pre-XDR-TB | lineage4.8 | ro | SRR12142318 | Pre-XDR-TB | lineage2.2.1 | None | SRR12142333 | Pre-XDR-TB | lineage2.2.1 | None | SRR16058703 | MDR-TB | lineage4.1.1.3 | None | SRR12142408 | Pre-XDR-TB | lineage2.2.1 | None | SRR16588744 | Pre-XDR-TB | lineage2.2.1 | None | SRR1643048 | RR-TB | lineage4.1.2.1 | None | SRR19276640 | Pre-XDR-TB | lineage4.1.1 | None | SRR19276631 | MDR-TB | lineage4.9 | None | SRR19276634 | MDR-TB | lineage4.3.3 | None | SRR19324986 | MDR-TB | lineage4.3.4.1 | None | SRR19276637 | MDR-TB | lineage4.3.3 | None | SRR20969453 | MDR-TB | lineage4.4.2 | None | SRR20969588 | MDR-TB | lineage2.2.1 | None | SRR2100026 | Pre-XDR-TB | lineage2.2.1 | None | SRR2100757 | RR-TB | lineage2.2.1 | None | SRR22528525 | MDR-TB | lineage4.3.3 | None | SRR21576590 | MDR-TB | lineage4.5 | None | SRR2100880 | RR-TB | lineage2.2.1 | None | SRR21576666 | MDR-TB | lineage4.4.2 | None | SRR21576693 | MDR-TB | lineage4.5 | None | SRR21747005 | MDR-TB | lineage2.2.1.1 | None | SRR22424941 | Pre-XDR-TB | lineage1.1.2 | None | SRR22536495 | Pre-XDR-TB | lineage4.1.1 | None | SRR22528581 | MDR-TB | lineage4.1.2.1 | None | SRR22536488 | Pre-XDR-TB | lineage4.1.1 | None | ERR11069002 | MDR-TB | lineage4.2.2.1 | None | ERR11080956 | MDR-TB | lineage4.8 | None | ERR11080892 | MDR-TB | lineage3 | None | ERR11081851 | MDR-TB | lineage4.4.1.1 | None | ERR11080947 | MDR-TB | lineage4.4.2 | None | ERR11081439 | RR-TB | lineage4.7 | None | ERR11082174 | MDR-TB | lineage2.2.1 | None | ERR11082637 | MDR-TB | lineage4.4.1.1 | None | ERR5758400 | MDR-TB | lineage2.2.2 | None | SRR21887722 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082937 | MDR-TB | lineage4.8 | None | SRR21887701 | Pre-XDR-TB | lineage2.2.1 | None | SRR3732580 | MDR-TB | lineage4.3.3 | None | SRR23691413 | Pre-XDR-TB | lineage4.5 | None | ERR4812881 | MDR-TB | lineage4.3.3 | pe | ERR4813206 | Pre-XDR-TB | lineage4.1.1 | pe | ERR4813691 | Pre-XDR-TB | lineage4.1.1 | None | SRR1723667 | MDR-TB | lineage2.2.1 | cn | SAMN02414844 | MDR-TB | lineage4.8 | se | ERR4813032 | RR-TB | lineage4.1.1.3 | pe | SRR3675285 | Pre-XDR-TB | lineage2.2.1 | gb | SRR1723955 | MDR-TB | lineage4.5 | cn | SRR1723822 | RR-TB | lineage2.2.1 | cn | ERR2184309 | MDR-TB | lineage4.9 | pe | SAMN02414877 | MDR-TB | lineage4.8 | se | ERR2245352 | RR-TB | lineage3.1.1 | no | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | ERR2510647 | Pre-XDR-TB | lineage3 | pk | ERR2510621 | MDR-TB | lineage3 | pk | ERR2179651 | MDR-TB | lineage4.4.2 | cn | ERR234562 | MDR-TB | lineage2.2.1 | ru | ERR2513104 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2512930 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2433003 | MDR-TB | lineage4.3.4.2.1 | br | SRR1723983 | MDR-TB | lineage4.4.2 | cn | ERR2433007 | MDR-TB | lineage4.3.4.2.1 | None | ERR2512718 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2515323 | RR-TB | lineage4.1.1.2 | za | ERR2516357 | MDR-TB | lineage4.8 | be | SAMN02053743 | RR-TB | lineage2.2.1 | za | ERR2513850 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2516517 | MDR-TB | lineage4.1.1 | pe | ERR2515482 | RR-TB | lineage4.8 | None | ERR2514137 | Pre-XDR-TB | lineage2.2.1 | None | ERR2517028 | MDR-TB | lineage4.6.2.2 | gb | ERR2516987 | MDR-TB | lineage4.6.2.2 | gb | ERR2179676 | MDR-TB | lineage4.5 | cn | ERR2517021 | MDR-TB | lineage4.6.2.2 | gb | ERR2515745 | MDR-TB | lineage2.2.1 | za | ERR2515857 | RR-TB | lineage4.4.1.1 | za | ERR2517037 | RR-TB | lineage2.2.1 | gb | SRR5341274 | Pre-XDR-TB | lineage1.2.2.2 | in | ERR2517035 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2515881 | MDR-TB | lineage4.1.1.3 | za | ERR2514646 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2517036 | Pre-XDR-TB | lineage2.2.1 | gb | ERR2516659 | MDR-TB | lineage4.1.2 | nl | ERR2517085 | MDR-TB | lineage4.6.2.2 | gb | ERR2517094 | MDR-TB | lineage4.6.2.2 | gb | ERR2516758 | MDR-TB | lineage4.6.2.2 | gb | ERR2515143 | MDR-TB | lineage4.1.1 | za | ERR2516834 | MDR-TB | lineage4.6.2.2 | gb | ERR270780 | RR-TB | lineage2.2.1 | None | ERR2652916 | MDR-TB | lineage4.1.1 | None | SRR5535708 | MDR-TB | lineage4.1.3 | None | ERR2677395 | MDR-TB | lineage4.1.2.1 | de | ERR266539 | RR-TB | lineage2.2.1 | None | SRR5709859 | MDR-TB | lineage2.2.1 | th | ERR4822345 | MDR-TB | lineage4.4.2 | None | SRR6045824 | Pre-XDR-TB | lineage2.2.1 | gb | SRR5837711 | MDR-TB | lineage2.2.2 | th | SRR6045245 | Pre-XDR-TB | lineage2.2.1 | gb | SAMN02584619 | Pre-XDR-TB | lineage2.2.1 | md | ERR4828815 | Pre-XDR-TB | lineage4.1.2 | None | SRR6045391 | Pre-XDR-TB | lineage2.2.1 | None | SRR6046243 | Pre-XDR-TB | lineage2.2.1 | gb | ERR4829932 | Pre-XDR-TB | lineage1.1.2 | None | ERR3132087 | MDR-TB | lineage2.2.2 | None | ERR4828894 | MDR-TB | lineage4.1.3 | None | SRR6046659 | Pre-XDR-TB | lineage2.2.1 | None | SRR610905 | MDR-TB | lineage2.2.1 | None | SAMEA2534283 | MDR-TB | lineage2.2.1 | uz | ERR4830361 | MDR-TB | lineage2.2.1 | vn | SRR6046733 | Pre-XDR-TB | lineage2.2.1 | None | SRR610904 | RR-TB | None | SRR611020 | Pre-XDR-TB | lineage2.2.1 | None | ERR4872053 | MDR-TB | lineage4.6.2.2 | None | SRR6797474 | MDR-TB | lineage1.1.3.1 | None | ERR4872108 | MDR-TB | lineage4.1.2.1 | None | ERR4872129 | MDR-TB | lineage4.6.2.2 | None | SRR6831831 | MDR-TB | lineage2.2.1 | None | ERR502272 | MDR-TB | lineage4.6.2.2 | None | ERR502304 | MDR-TB | lineage4.6.2.2 | None | SRR671770 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6982240 | RR-TB | lineage2.2.1 | None | SRR6824289 | MDR-TB | lineage2.2.1 | cn | SRR6930923 | Pre-XDR-TB | lineage1.2.2.2 | None | SRR6964651 | RR-TB | lineage3.1.2.1 | None | ERR3132151 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR6824486 | MDR-TB | lineage4.5 | cn | SRR6824683 | MDR-TB | lineage4.4.2 | cn | SRR6824372 | RR-TB | lineage2.2.1 | cn | SRR6855830 | MDR-TB | lineage4.1.1.3 | None | ERR502404 | MDR-TB | lineage4.6.2.2 | None | ERR502356 | MDR-TB | lineage4.6.2.2 | None | SRR833143 | RR-TB | lineage2.2.1 | None | SRR832999 | RR-TB | lineage2.2.1 | None | SRR7517770 | MDR-TB | lineage4.3.3 | pe | SRR7781511 | MDR-TB | lineage4.1.3 | None | SRR7517778 | MDR-TB | lineage2.2.1 | th | SRR7517789 | MDR-TB | lineage4.1.3 | ci | SRR8651589 | Pre-XDR-TB | lineage2.2.1 | cn | SRR8651663 | Pre-XDR-TB | lineage2.2.1 | cn | DRR130146 | MDR-TB | lineage2.2.2 | None | DRR130115 | MDR-TB | lineage4.4.2 | None | ERR046933 | MDR-TB | lineage5.1.3 | gb | ERR046918 | RR-TB | lineage5.1.3 | gb | DRR130215 | MDR-TB | lineage2.2.2 | None | DRR213597 | MDR-TB | lineage2.2.2 | None | ERR040132 | MDR-TB | lineage4.3.3 | ug | ERR10680197 | MDR-TB | lineage4.3.3 | None | ERR1034793 | RR-TB | lineage4 | None | ERR1035014 | MDR-TB | lineage2.2.2 | za | ERR1034659 | MDR-TB | lineage4.4.1.1 | bg | ERR1034797 | RR-TB | lineage4.1.2.1 | pe | ERR1034796 | RR-TB | lineage4.1.2.1 | pe | ERR10680112 | MDR-TB | lineage4.1.3 | None | ERR10680198 | MDR-TB | lineage4.3.3 | None | ERR11043265 | MDR-TB | lineage4.8 | None | ERR11043132 | MDR-TB | lineage4.1.2.1 | None | ERR11044257 | MDR-TB | lineage4.8 | None | ERR11043769 | MDR-TB | lineage4.4.2 | None | ERR11043821 | MDR-TB | lineage3.1.3 | None | ERR11044008 | MDR-TB | lineage1.2.1.2.1 | None | ERR1413476 | MDR-TB | lineage4.6.2.2 | None | ERR1227518 | RR-TB | lineage4.1.2.1 | None | ERR1213857 | MDR-TB | lineage2.2.2 | kr | ERR1213904 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR3287600 | MDR-TB | lineage4.8 | pe | ERR3639812 | MDR-TB | lineage4.8 | None | ERR3287675 | RR-TB | lineage4.1.1.3 | pe | ERR369656 | MDR-TB | lineage4.6.2.2 | None | ERR369756 | MDR-TB | lineage4.6.2.2 | None | ERR369654 | MDR-TB | lineage4.6.2.2 | None | ERR369715 | MDR-TB | lineage4.6.2.2 | None | ERR369733 | MDR-TB | lineage4.6.2.2 | None | ERR369721 | MDR-TB | lineage4.6.2.2 | None | ERR4025079 | MDR-TB | lineage4.3.3 | None | ERR4011072 | MDR-TB | lineage2.2.1 | None | ERR4553419 | MDR-TB | lineage4 | None | ERR403345 | RR-TB | lineage2.2.1 | None | ERR4423736 | RR-TB | lineage1.2.2.1 | None | ERR4553648 | MDR-TB | None | ERR4553478 | Pre-XDR-TB | lineage4 | None | ERR4553434 | MDR-TB | lineage2.2.1 | None | ERR4553459 | MDR-TB | None | ERR4553763 | Pre-XDR-TB | lineage2.2.1 | None | ERR4553721 | MDR-TB | lineage4 | None | ERR4797028 | Pre-XDR-TB | lineage1.1.2 | in | ERR4797289 | MDR-TB | lineage2.2.1.1 | in | ERR4797481 | Pre-XDR-TB | lineage3 | in | ERR4798194 | MDR-TB | lineage1.2.2.2 | in | ERR4798347 | Pre-XDR-TB | lineage1.1.2 | in |
---|