lineage | Count |
---|---|
lineage2.2 | 2 |
lineage3 | 19 |
lineage3;lineage2.2.1 | 4 |
lineage4.3.4.2 | 6 |
lineage3;lineage2.2 | 2 |
lineage4.8 | 3 |
lineage2.2.1 | 6 |
lineage3.1.1 | 1 |
lineage4.1.2.1 | 7 |
lineage4.3.2 | 1 |
lineage4.1.2 | 1 |
lineage2.2.1.1 | 11 |
lineage4.1.1;lineage2.2.1.1 | 1 |
lineage4.9.1 | 1 |
lineage4 | 1 |
spoligotype | Count |
---|---|
None | 66 |
ID | Drug resistance | Lineage | Country iso2 | SRR1002694 | MDR-TB | lineage2.2 | None | SRR1049733 | Pre-XDR-TB | lineage3 | None | SRR1049608 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR1049734 | Pre-XDR-TB | lineage3 | None | SRR1049607 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR1062939 | Pre-XDR-TB | lineage3 | None | SRR1062892 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR1062932 | Pre-XDR-TB | lineage3 | None | SRR1140589 | Pre-XDR-TB | lineage3 | None | SRR1140625 | Pre-XDR-TB | lineage3 | None | SRR1140575 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR1162721 | MDR-TB | lineage4.3.4.2 | None | SRR1165523 | MDR-TB | lineage4.3.4.2 | None | SRR1173380 | Pre-XDR-TB | lineage3;lineage2.2 | None | SRR1165574 | MDR-TB | lineage4.3.4.2 | None | SRR1166712 | MDR-TB | lineage4.3.4.2 | None | SRR22424902 | MDR-TB | lineage3 | None | SRR1173800 | Pre-XDR-TB | lineage3;lineage2.2 | None | ERR11081270 | RR-TB | lineage4.8 | None | ERR11081518 | RR-TB | lineage4.8 | None | ERR11138635 | MDR-TB | lineage2.2.1 | None | ERR2245296 | RR-TB | lineage3.1.1 | no | SRR21887658 | MDR-TB | lineage2.2.1 | None | ERR3148177 | Pre-XDR-TB | lineage3 | mx | ERR2229632 | Sensitive | lineage4.8 | None | ERR3148179 | Pre-XDR-TB | lineage3 | mx | ERR4814494 | Pre-XDR-TB | lineage3 | gb | SAMN02414951 | MDR-TB | lineage4.3.4.2 | se | SRR5065610 | MDR-TB | lineage2.2.1 | vn | ERR229932 | MDR-TB | lineage4.1.2.1 | ru | SRR5067439 | MDR-TB | lineage2.2.1 | vn | SAMN02381049 | Pre-XDR-TB | lineage3 | ug | ERR2510363 | MDR-TB | lineage3 | pk | ERR2513872 | Pre-XDR-TB | lineage3 | gb | ERR2516405 | Pre-XDR-TB | lineage4.1.2.1 | pe | ERR4830754 | Pre-XDR-TB | lineage3 | ir | ERR2513954 | Pre-XDR-TB | lineage3 | gb | ERR4821955 | Pre-XDR-TB | lineage3 | None | ERR2864233 | MDR-TB | lineage4.1.2.1 | pt | ERR2516698 | Pre-XDR-TB | lineage4.1.2.1 | pe | SRR6257069 | MDR-TB | lineage2.2 | None | SRR6511635 | MDR-TB | lineage4.1.2.1 | None | ERR4831931 | MDR-TB | lineage2.2.1 | vn | ERR4972489 | MDR-TB | lineage4.3.2 | None | SAMN02381042 | Pre-XDR-TB | lineage3 | ug | SRR6832647 | Pre-XDR-TB | lineage4.1.2 | None | ERR4831866 | MDR-TB | lineage2.2.1 | vn | ERR1034842 | MDR-TB | lineage4.1.2.1 | pt | ERR4798254 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4796442 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4796972 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797417 | Pre-XDR-TB | lineage4.1.1;lineage2.2.1.1 | in | ERR4797727 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797945 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4798204 | RR-TB | lineage4.9.1 | in | ERR108482 | MDR-TB | lineage4.1.2.1 | ru | ERR3561992 | MDR-TB | lineage4.3.4.2 | None | ERR4423629 | Pre-XDR-TB | lineage3 | None | ERR4553406 | MDR-TB | lineage3 | None | ERR4796776 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797413 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4798330 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR779923 | MDR-TB | lineage4 | pe | ERR4799634 | XDR-TB | lineage2.2.1.1 | in | ERR4799657 | XDR-TB | lineage2.2.1.1 | None | ERR4800059 | Pre-XDR-TB | lineage2.2.1.1 | in |
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