Rv0668 - c.-317T>C


Drug resistance types
82 Sensitive 68 RR-TB 65 HR-TB 41 MDR-TB 31 Pre-XDR-TB 0 XDR-TB 150 Other
lineage Counts
lineage Count
lineage3.1.2 2
lineage2.2.1 38
51
lineage2.2 5
lineage1.2.1.1 1
lineage1.1.3.1 3
lineage4.9 82
lineage3 26
lineage2.1 2
lineage4.8 13
lineage4 59
lineage4.1 4
lineage2.2.1.1 3
lineage3.1.2.1 3
lineage3.1 1
La1.8.2 1
lineage4.6.1.2 1
lineage4.1.2 3
lineage4.3.3 6
lineage4.8.1 1
lineage4.1.1.3 6
lineage4.2.1.1 1
lineage4.5 2
lineage3.1.3 1
lineage4.1.2.1 12
lineage6 2
lineage1.1.2 5
lineage4.4.1.1 8
lineage1 1
lineage4.1.1 1
lineage4.1.1.2 1
lineage4.3.4.2.1 5
lineage4.3.2 1
lineage4.1.1.3.1 3
lineage1.1.1 1
lineage4.3.4.1 2
lineage1.2.1.2.1 2
lineage4.6.2.2 3
lineage3.1.1 4
lineage4.3.4.2 4
lineage4.9;lineage2.1 1
lineage4.3.2.1 3
lineage5 1
lineage4.2.2.2 1
lineage4.2.1 3
lineage1.2.2.2 2
lineage4.3.1 1
lineage4.3.1.1 1
lineage4.6.5 3
lineage5.1.1 1
lineage4.7 5
lineage4.6.1.1 3
lineage4.4.2 3
lineage1.1.1.1 2
lineage4.4.1.2 1
La1.8.1 3
lineage6.2.3;lineage1.1.2 1
La1.7.X-unk4 1
La1.3 6
La1.2 3
lineage4.9;La1.3 3
La1 1
lineage2.2.1.2 3
lineage4.7;lineage4.3.4.2 2
lineage6.1.3 1
lineage4.4.1.1;lineage4.1.2.1 1
La1.6 1
lineage4.4.1.1.1 1
La2 1
lineage2.2.2 3
lineage4.4 1
lineage7;lineage2.2.1.2 1
lineage1.2.1.2 1
lineage1.2.2 1
lineage4.9;lineage4.8.1;lineage4.1.1 1
spoligotype Counts
spoligotype Count
None 437
Geographic prevalence
Country level data for this variant is available for 3 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
ERR4814356 Pre-XDR-TB lineage3.1.2 None
SRR3619841 Pre-XDR-TB lineage2.2.1 None
SRR3675488 HR-TB None
SRR3601585 Pre-XDR-TB lineage2.2 None
ERR4814734 Other lineage1.2.1.1 None
SRR3619764 Pre-XDR-TB lineage2.2 None
ERR4814617 Other lineage1.1.3.1 None
ERR4815471 Other lineage4.9 None
ERR4814690 Sensitive lineage2.2.1 None
SRR3675501 HR-TB None
SRR3618864 Pre-XDR-TB lineage2.2.1 None
SRR3675222 Other None
SRR3675230 RR-TB lineage3 None
ERR1750907 RR-TB None
ERR702405 Sensitive lineage2.1 None
SRR3675284 HR-TB lineage4.9 None
ERR4814748 Other lineage4.8 None
ERR4814763 Other lineage2.2.1 None
SRR3675280 HR-TB lineage4.9 None
SRR3675246 Sensitive lineage4 None
ERR4815502 Other lineage4.1 None
ERR4814896 Other lineage2.2.1.1 None
ERR4813263 MDR-TB lineage4.8 None
ERR4815022 Other lineage3.1.2.1 None
ERR176751 HR-TB None
SRR3675456 HR-TB None
ERR4815909 Other lineage4.8 None
SRR3675509 Other lineage4.9 None
ERR4815901 Other lineage2.2 None
ERR4816964 Other lineage4.9 None
ERR2027290 RR-TB lineage3.1 None
ERR4816982 Other lineage4 None
ERR2027250 Other lineage3.1.2 None
ERR4816133 Other La1.8.2 None
SRR3675555 HR-TB None
SRR3675552 RR-TB lineage4.9 None
ERR4817478 Other lineage3 None
ERR4816470 Other lineage3 None
ERR4817060 RR-TB None
ERR4816310 HR-TB lineage4.6.1.2 None
ERR212121 HR-TB None
ERR4816476 Other lineage3.1.2.1 None
ERR4816531 Other lineage4.1.2 None
ERR2229198 MDR-TB lineage4.8 None
ERR216965 HR-TB lineage4.9 None
ERR4817204 RR-TB lineage4.9 None
SRR5341384 Sensitive lineage4.9 None
ERR4816610 RR-TB lineage4.3.3 None
SRR3742667 Sensitive lineage4.9 None
ERR4816717 RR-TB lineage3.1.2.1 None
SRR4033263 Sensitive lineage4.8.1 None
ERR4816729 Sensitive lineage4.9 None
ERR4816745 Pre-XDR-TB lineage2.2.1 None
ERR4816866 Other lineage2.2.1 None
ERR4816755 Other lineage4.1.1.3 None
ERR4816756 RR-TB None
ERR4817874 Other lineage3 None
ERR4815811 HR-TB lineage4.2.1.1 None
ERR4817826 RR-TB lineage4.5 None
ERR4818710 Sensitive lineage4.9 None
ERR2446566 Other lineage4.1 None
ERR2513121 Sensitive lineage3.1.3 None
ERR4819017 RR-TB lineage3 None
ERR4818785 RR-TB lineage4.1.2.1 None
ERR4818787 MDR-TB lineage6 None
ERR245675 Sensitive lineage1.1.2 None
ERR3275615 Sensitive lineage4.4.1.1 nl
ERR4818110 Sensitive lineage4.9 None
ERR4818126 RR-TB lineage1 None
ERR4818128 RR-TB lineage4.1.2.1 None
ERR4818831 Other lineage3 None
ERR4818259 RR-TB lineage4.1.1 None
ERR4818252 Other lineage4.1.1.2 None
ERR245794 HR-TB lineage4.3.4.2.1 None
ERR4819051 Other lineage4 None
ERR4818274 Other lineage4 None
ERR2512606 MDR-TB lineage3 None
ERR4818407 Other lineage4.3.2 None
ERR4818393 RR-TB lineage3 None
ERR2509886 RR-TB lineage3 None
ERR3275709 HR-TB lineage3 nl
ERR2513259 Other lineage3 None
ERR4818522 Pre-XDR-TB lineage3 None
SRR5341453 Sensitive None
SRR5007167 RR-TB lineage4.1.1.3.1 None
SRR5007161 RR-TB lineage4.1.1.3.1 None
SRR5007165 MDR-TB lineage3 None
SRR5007170 RR-TB lineage4.9 None
SRR5007193 RR-TB lineage4.1.1.3.1 None
ERR4818646 Sensitive lineage4.1.2.1 None
ERR4817584 MDR-TB lineage3 None
ERR4818624 Other lineage4.3.4.2.1 None
ERR4817554 Other lineage1.1.1 None
SRR5153091 HR-TB lineage4.3.3 None
ERR2513681 Other lineage1.1.2 None
ERR4820265 Other lineage4.1.2.1 None
SRR5341387 Other lineage4 None
ERR4819265 HR-TB lineage4.3.4.1 None
ERR4820723 RR-TB lineage4.4.1.1 None
ERR4819224 Other lineage1.2.1.2.1 None
ERR4820266 RR-TB lineage3 None
ERR4819357 Other lineage4.9 None
ERR4819305 RR-TB lineage4.9 None
ERR4819307 RR-TB lineage4 None
SRR5341412 Pre-XDR-TB lineage3 None
SRR5341456 Other None
ERR4819383 RR-TB lineage4.9 None
SRR5341425 Other lineage4 None
ERR4820324 Other lineage4 None
ERR4819640 RR-TB lineage4.6.2.2 None
ERR2514181 Other lineage1.2.1.2.1 None
ERR4820410 Pre-XDR-TB lineage3.1.1 None
ERR4819456 Other lineage4.8 None
ERR4819706 MDR-TB lineage4.3.4.2 None
ERR4819784 Other lineage4.1.2.1 None
ERR4819765 Other lineage4.1 None
ERR4819772 RR-TB lineage1.1.3.1 None
SRR5341455 Sensitive lineage4 None
SRR5341298 Sensitive lineage4 None
ERR4819863 RR-TB lineage4.9 None
SRR5341300 Other lineage4 None
ERR4819809 HR-TB lineage4.6.2.2 None
SRR5341299 Sensitive lineage4 None
SRR5341303 RR-TB lineage4 None
ERR4819933 Other lineage4.9 None
SRR5341308 Sensitive lineage4 None
ERR4819948 Other lineage4.4.1.1 None
SAMEA3501070 RR-TB lineage4.8 None
ERR4820833 HR-TB None
SRR5341310 Other lineage1.1.2 None
SRR5341341 Pre-XDR-TB lineage2.2.1 None
ERR4820030 Other lineage4.9 None
SRR5341330 HR-TB None
SRR5341461 Sensitive lineage4 None
ERR4820107 RR-TB None
ERR4820151 RR-TB lineage4.8 None
ERR2693238 HR-TB lineage4.9 None
SRR5341366 Sensitive lineage4 None
SRR5341467 Other lineage4 None
SRR5341469 Other lineage4 None
SRR5341465 Pre-XDR-TB lineage2.2.1 None
ERR2446154 Sensitive lineage4.4.1.1 nl
SRR5535933 HR-TB None
SRR6045516 Other lineage3.1.1 None
SRR6045450 Other lineage4.9 None
ERR502511 Sensitive lineage4.9;lineage2.1 None
ERR4821172 RR-TB lineage4.9 None
ERR2660539 Other lineage4.9 None
SRR6046117 RR-TB lineage4.9 None
ERR4821176 Pre-XDR-TB lineage2.2.1 None
ERR4821222 Other lineage4.3.2.1 None
ERR4821214 RR-TB None
ERR4821276 Other lineage3 None
ERR4822261 RR-TB lineage2.2.1 None
ERR4822138 Other lineage4.1.2.1 None
ERR4821310 Other lineage5 None
ERR4822104 RR-TB lineage3 None
ERR4821530 HR-TB lineage4.3.4.1 None
ERR4821655 Sensitive lineage4 None
ERR4821769 Other lineage4.1.2.1 None
SRR6046141 Other lineage4.9 None
SRR6045603 RR-TB lineage4.1.1.3 None
SRR5818622 Sensitive lineage4.2.2.2 None
SRR6046151 Sensitive lineage4.9 None
SRR6045664 Other lineage4.2.1 None
SRR5818647 RR-TB lineage4.3.4.2.1 None
SRR6045892 Sensitive None
SRR5818672 Other lineage1.2.2.2 None
SRR6044897 Sensitive lineage4.9 None
SRR6044838 Other lineage4.9 None
SRR6045909 Other lineage4.8 None
SRR6044780 Other lineage4.9 None
SRR6045957 Other lineage4.9 None
SRR6044936 Other lineage4 None
SRR6044925 Sensitive lineage4.9 None
SRR6044983 Other lineage3.1.1 None
SRR6044993 Other lineage3 None
SRR6046492 Other None
SRR6045010 Other lineage4 None
SRR6045424 Other lineage1.1.2 None
SRR6046250 Other lineage4.9 None
SRR6046253 HR-TB lineage4.9 None
SRR6046299 HR-TB None
ERR4829039 RR-TB lineage4.3.1 None
ERR4829530 Pre-XDR-TB lineage4.8 None
SRR6046482 HR-TB None
SRR6045124 Other lineage4.9 None
SRR6045191 Sensitive lineage4.9 None
SRR6045399 Other None
SRR6046382 HR-TB lineage2.2.1 None
ERR2851356 Sensitive lineage4.9 None
ERR4830353 Other None
SRR6046815 Other lineage3 None
SRR6046616 Other lineage4.3.1.1 None
SRR6046737 Other lineage4.9 None
SRR6046839 Other lineage4.9 None
SRR6046848 Other lineage4.6.5 None
SRR6511621 HR-TB None
ERR502470 RR-TB lineage4.9 None
ERR323037 HR-TB lineage4 None
ERR502473 Pre-XDR-TB lineage4.9 None
ERR4831117 HR-TB None
ERR502474 Pre-XDR-TB lineage4.9 None
ERR485006 HR-TB lineage4.9 None
ERR502478 RR-TB lineage4.9 None
ERR502481 Pre-XDR-TB lineage4.9 None
ERR502479 RR-TB lineage4.9 None
ERR4831620 MDR-TB lineage2.2.1 None
ERR4831617 MDR-TB lineage2.2.1 None
ERR4831618 MDR-TB lineage2.1 None
ERR502510 Sensitive lineage4 None
ERR4831616 MDR-TB lineage2.2.1 None
ERR4831657 MDR-TB lineage2.2.1 None
SRR6982239 HR-TB lineage4.1.1.3 None
SRR6832644 Other lineage4.3.3 None
ERR4831621 MDR-TB lineage2.2.1.1 None
SRR6789624 MDR-TB lineage4.1 None
SRR6982246 Sensitive lineage4 None
ERR502517 MDR-TB lineage5.1.1 None
SRR7496471 Sensitive None
SRR9971270 RR-TB lineage2.2.1 None
SRR7496523 Other lineage4.7 None
SRR9970980 Other lineage4.1.2 None
SRR9613550 HR-TB lineage4.1.2.1 None
SRR9970978 Sensitive lineage4.1.2 None
SRR7535047 RR-TB lineage4.6.1.1 None
SRR7535082 Sensitive lineage4 None
SRR9971041 MDR-TB lineage4.3.3 None
SRR9970979 Sensitive lineage4.8 None
SRR9970981 RR-TB lineage4.3.2.1 None
SRR9971080 RR-TB lineage2.2.1 None
SRR9971113 Other lineage2.2.1 None
SRR8651633 Pre-XDR-TB lineage4.4.2 None
SRR9971112 Other lineage2.2.1 None
SRR7755654 Pre-XDR-TB lineage4.2.1 None
ERR323107 Other lineage4 None
SRR9971168 Other lineage4.3.2.1 None
ERR323066 Sensitive lineage4 None
DRR185000 Other lineage1.1.1.1 None
ERR323085 Sensitive lineage4 None
ERR323048 Pre-XDR-TB lineage4.9 None
ERR323056 HR-TB lineage4.4.1.2 None
ERR1035122 Sensitive None
ERR067699 HR-TB lineage4 None
ERR1063855 Other lineage4 None
ERR1063896 Sensitive None
ERR1063883 Sensitive lineage4 None
ERR10796597 Other lineage4 None
ERR1199132 Sensitive lineage4.6.1.1 None
ERR10796598 RR-TB lineage4.9 None
ERR133825 Sensitive lineage4 None
ERR3283055 HR-TB None
ERR137286 Sensitive lineage4 None
ERR3273109 MDR-TB lineage4 None
ERR3283013 MDR-TB lineage4 None
ERR323115 Sensitive lineage4 None
ERR3283030 HR-TB lineage4.9 None
ERR3283040 HR-TB None
ERR3468488 RR-TB La1.8.1 None
ERR3324368 RR-TB lineage6.2.3;lineage1.1.2 None
ERR3445487 Other La1.7.X-unk4 None
ERR3445504 HR-TB None
ERR3797080 HR-TB lineage4.9 None
ERR3797015 HR-TB None
ERR3797019 Other La1.8.1 None
ERR3797046 HR-TB None
ERR4024991 Other None
ERR387051 HR-TB None
ERR4596910 Sensitive lineage4 None
ERR4178161 Other lineage4.4.1.1 None
ERR4188247 HR-TB None
ERR473303 Sensitive lineage4.9 None
ERR473332 Other lineage4 None
ERR473323 HR-TB lineage4.9 None
ERR4769419 Other lineage4.9 None
ERR4769408 Other La1.3 None
ERR473334 HR-TB lineage4.9 None
ERR473367 Sensitive lineage4.9 None
ERR4769433 Pre-XDR-TB lineage4.9 None
ERR4769427 Other La1.2 None
ERR4769418 Other La1.2 None
ERR4769442 HR-TB lineage4 None
ERR4769444 HR-TB lineage4.9 None
ERR4769446 Sensitive lineage4.9;La1.3 None
ERR4769493 Pre-XDR-TB lineage4.9;La1.3 None
ERR4769457 Other lineage4.9 None
ERR4769497 HR-TB La1.2 None
ERR4769495 Other La1.3 None
ERR4769508 RR-TB lineage4.9 None
ERR4769516 Other La1.3 None
ERR4769550 Other lineage4.9;La1.3 None
ERR4769514 Other La1.3 None
ERR4769530 RR-TB lineage4.9 None
ERR4769552 Other La1.3 None
ERR4796472 Pre-XDR-TB lineage2.2.1 None
ERR4769555 Other La1.3 None
ERR4796351 MDR-TB lineage4.9 None
ERR4796254 Sensitive lineage4 None
ERR4797264 Sensitive None
ERR4796929 Sensitive lineage4 None
ERR4797193 HR-TB lineage1.1.2 None
ERR4797184 Sensitive lineage4 None
ERR4797285 MDR-TB lineage1.2.2.2 None
ERR4797474 Other None
ERR4798262 HR-TB La1 None
ERR4798099 Other None
ERR4799989 Pre-XDR-TB lineage2.2.1.2 None
ERR4799378 Sensitive lineage4 None
ERR6197021 MDR-TB lineage4.7;lineage4.3.4.2 None
ERR4811493 HR-TB None
ERR5987263 MDR-TB lineage2.2.1 None
ERR6197029 Other lineage4.7 None
ERR6197027 Other lineage4.7 None
ERR6197031 Other lineage4.7 None
ERR6197023 MDR-TB lineage4.7;lineage4.3.4.2 None
ERR6197032 Other lineage4.9 None
ERR6197033 Other lineage4.7 None
ERR6197043 MDR-TB lineage4.3.4.2 None
ERR6358979 Other None
ERR6197041 MDR-TB lineage4.3.4.2 None
ERR6358951 HR-TB lineage4 None
ERR6359074 HR-TB lineage4.9 None
ERR6358991 HR-TB None
ERR6359070 Other lineage4.9 None
ERR6359069 Other lineage4.9 None
ERR6865446 Other lineage4.4.1.1 None
ERR6866022 Other None
ERR6866410 Sensitive None
ERR6866125 Sensitive lineage4.1.2.1 None
ERR7801175 RR-TB lineage4.6.5 None
ERR6866639 Other None
ERR736831 HR-TB lineage4.9 None
ERR736837 Other lineage4.9 None
ERR736872 Sensitive lineage4 None
ERR752012 HR-TB lineage1.1.1.1 None
ERR6866547 Sensitive lineage4 None
ERR736834 Sensitive lineage4 None
ERR736848 HR-TB None
ERR736856 HR-TB lineage4 None
ERR751326 Sensitive lineage4 None
ERR752229 Other lineage4.5 None
ERR9029360 MDR-TB lineage2.2.1 None
ERR8479578 Sensitive lineage1.1.3.1 None
ERR7801176 RR-TB lineage4.6.5 None
ERR9786076 Sensitive lineage3 None
ERR9119733 MDR-TB lineage2.2.1 None
ERR9787256 Other lineage6.1.3 None
ERR9786164 RR-TB lineage4.1.1.3 None
ERR9786592 Sensitive lineage4.3.4.2 None
ERR9786639 Sensitive lineage4.8 None
SRR10315567 Other lineage2.2.1 None
ERR9787336 Other lineage6 None
ERR9896153 RR-TB lineage4.4.1.1 None
ERR987765 Sensitive lineage4.6.1.1 None
SRR10315556 Sensitive lineage2.2.1 None
SRR10315551 Sensitive lineage2.2.1 None
SRR10315579 Other lineage2.2.1.1 None
SRR1049725 RR-TB lineage4.1.2.1 None
SRR1049673 Pre-XDR-TB lineage3 None
SRR1049672 Other lineage3 None
SRR1049726 MDR-TB lineage4.4.1.1;lineage4.1.2.1 None
SRR10808399 Sensitive lineage4 None
SRR1062928 RR-TB lineage4 None
SRR10808668 Sensitive lineage2.2.1 None
SRR10809074 Sensitive lineage4 None
SRR10808805 Sensitive None
SRR10993951 RR-TB La1.6 None
SRR10869071 MDR-TB lineage2.2.1 None
SRR11349145 Pre-XDR-TB lineage4.4.1.1.1 None
SRR1140736 RR-TB None
SRR11349211 Pre-XDR-TB lineage4.3.3 None
SRR1173770 Other lineage4.9 None
SRR1140753 MDR-TB lineage4.3.4.2.1 None
SRR1172796 Sensitive lineage2.2.1.2 None
SRR1172987 HR-TB lineage4.9 None
SRR1173170 Other lineage4.9 None
SRR1173185 HR-TB lineage4.9 None
SRR1173310 MDR-TB None
SRR1158918 Sensitive lineage4 None
SRR1173281 RR-TB lineage3 None
SRR1173568 Other lineage4.9 None
SRR1173719 HR-TB lineage3 None
SRR1173740 Other None
SRR1173777 Other lineage4 None
SRR1175127 Sensitive lineage2.2.1.2 None
SRR1181161 Other lineage4.9 None
SRR1180996 HR-TB lineage4 None
SRR11972425 Pre-XDR-TB lineage2.2.1 None
SRR1184329 MDR-TB lineage4.9 None
SRR1196478 MDR-TB lineage4.9 None
SRR1183965 Sensitive lineage4.9 None
SRR12634609 MDR-TB lineage3.1.1 None
SRR12142339 HR-TB lineage2.2.1 None
SRR13888750 Other La2 None
SRR13180363 Sensitive lineage4.1.2.1 None
SRR14801749 Sensitive None
SRR14801652 MDR-TB lineage4.3.3 None
SRR18002875 MDR-TB lineage2.2.2 None
SRR14802079 MDR-TB lineage4.2.1 None
SRR16156188 HR-TB lineage4.9 None
SRR16156775 Other lineage4.9 None
SRR1735596 RR-TB lineage4.9 None
SRR17567930 Other lineage4.4.1.1 None
SRR16156804 RR-TB lineage4.9 None
SRR16627752 RR-TB lineage4.4 None
SRR1791747 Other La1.8.1 None
SRR18002903 Pre-XDR-TB lineage2.2.1 None
SRR18002881 Pre-XDR-TB lineage2.2.1 None
SRR18002998 Pre-XDR-TB lineage2.2.2 None
SRR18002976 Other lineage2.2.1 None
SRR18002947 MDR-TB lineage2.2.1 None
SRR18003004 Pre-XDR-TB lineage2.2.2 None
SRR18003042 Other lineage2.2.1 None
SRR18003024 RR-TB lineage2.2.1 None
SRR18003047 MDR-TB lineage2.2.1 None
SRR18213721 Other lineage4.8 None
SRR19303773 Other lineage4.6.2.2 None
SRR18213736 MDR-TB lineage3 None
SRR18549032 HR-TB lineage7;lineage2.2.1.2 None
SRR18911231 Sensitive lineage4.1.1.3 None
SRR20632814 Sensitive lineage4 None
SRR19295647 Sensitive lineage4.9 None
SRR19303820 RR-TB lineage4.8 None
SRR21240055 Other lineage4.1.2.1 None
SRR20969475 Other lineage1.2.1.2 None
SRR20969542 Other lineage4.4.2 None
SRR20969731 Other lineage2.2.1 None
SRR20969708 HR-TB lineage2.2 None
SRR20970016 Other lineage2.2 None
SRR22424765 MDR-TB lineage4 None
SRR21677886 Sensitive lineage4.9 None
ERR4815301 Other lineage4.4.2 None
SRR3675475 Other lineage4.1.1.3 None
ERR4815225 RR-TB lineage1.2.2 None
ERR4815298 Other lineage4.3.4.2.1 None
ERR4814312 Other lineage4 None
ERR779852 Sensitive lineage4.9;lineage4.8.1;lineage4.1.1 None