lineage | Count |
---|---|
217 | |
lineage4.4.1.1 | 12 |
lineage4 | 93 |
lineage4.3.1.1 | 1 |
lineage3 | 28 |
lineage3.1 | 5 |
lineage4.9 | 163 |
lineage2.2.1 | 76 |
lineage4.6.1 | 1 |
lineage5.2 | 5 |
lineage2.2.1.1 | 8 |
lineage4.1.2.1 | 32 |
lineage1.1 | 1 |
lineage2.2 | 10 |
lineage4.6.2.2 | 7 |
lineage2.1 | 5 |
lineage4.3.3 | 11 |
lineage4.2.1 | 5 |
lineage4.2.1.1 | 1 |
lineage4.1 | 3 |
lineage4.1.1.3 | 6 |
lineage3.1.1 | 5 |
lineage4.3 | 2 |
lineage4.7 | 8 |
lineage4.1.2 | 3 |
lineage4.3.2.1 | 2 |
lineage4.8 | 29 |
lineage4.4.2 | 2 |
lineage4.3.4.2.1 | 7 |
La1.2 | 1 |
lineage4.4.1.2 | 2 |
lineage1.1.1.1 | 2 |
lineage4.3.4 | 4 |
lineage4.6.1.1 | 3 |
La1 | 2 |
La1.8.1 | 8 |
lineage4.1.3 | 2 |
lineage4;lineage3.1 | 1 |
La1.3 | 3 |
lineage4.9;La1.3 | 3 |
lineage1.2.2.2 | 3 |
lineage2 | 5 |
lineage1.1.2 | 6 |
lineage3.1.2.1 | 3 |
lineage4.7;lineage4.3.4.2 | 2 |
lineage4.3.2 | 4 |
lineage4.3.4.2 | 3 |
lineage4.3.4.1 | 2 |
lineage4.6.5 | 1 |
lineage5.1.1 | 1 |
lineage4.1.2.1.1 | 1 |
lineage1.1.3.2 | 2 |
lineage1.1.3.1 | 2 |
lineage3.1.3 | 3 |
lineage1.2.1.2.1 | 3 |
lineage4.8;lineage4.1 | 2 |
lineage4.1.1 | 3 |
lineage6.1.3 | 2 |
lineage6 | 2 |
lineage6.3.1 | 1 |
lineage6.2.3 | 1 |
lineage2.2.2 | 3 |
lineage4.4.1.1.1 | 2 |
La3 | 1 |
lineage4.9;lineage2.2 | 1 |
lineage1.2.1.2 | 2 |
lineage4.5 | 3 |
lineage1.1.1 | 3 |
La2 | 1 |
La1.4 | 1 |
lineage4.4 | 1 |
La1.7.1 | 3 |
lineage4.4.2;lineage4.2.2;lineage2.2.1 | 1 |
lineage4;lineage2.2 | 1 |
lineage4.9;lineage4.8.1;lineage4.1.1 | 1 |
lineage3;lineage2.1 | 1 |
lineage1.2.1.1 | 1 |
lineage4;lineage2 | 1 |
lineage4;lineage1.1.2 | 1 |
lineage4.8;La3 | 1 |
lineage4.1.1.2 | 1 |
lineage4.9.1 | 1 |
lineage4.1.1.3.1 | 3 |
lineage4;lineage1.1 | 1 |
lineage4.9;lineage2.1 | 1 |
lineage4.9;lineage4.2.1 | 1 |
spoligotype | Count |
---|---|
None | 868 |
ID | Drug resistance | Lineage | Country iso2 | SRR6046514 | HR-TB | None | SRR6325448 | HR-TB | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046540 | HR-TB | None | SRR6046594 | HR-TB | lineage4 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6325447 | HR-TB | None | SRR6046815 | Other | lineage3 | None | ERR323034 | HR-TB | lineage3.1 | None | SRR6046839 | Other | lineage4.9 | None | SRR6458421 | MDR-TB | lineage2.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR3078008 | MDR-TB | lineage4.6.1 | None | ERR4831117 | HR-TB | None | ERR4872077 | Pre-XDR-TB | lineage5.2 | None | SRR6046834 | Sensitive | lineage4.9 | None | SRR6046824 | HR-TB | None | SRR6079962 | HR-TB | lineage2.2.1.1 | None | SRR6397654 | HR-TB | lineage4.1.2.1 | None | SRR6511621 | HR-TB | None | ERR3077978 | Other | lineage1.1 | None | ERR502470 | RR-TB | lineage4.9 | None | ERR502473 | Pre-XDR-TB | lineage4.9 | None | ERR502474 | Pre-XDR-TB | lineage4.9 | None | ERR502478 | RR-TB | lineage4.9 | None | ERR502479 | RR-TB | lineage4.9 | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831545 | Pre-XDR-TB | lineage2.2 | None | ERR4872119 | MDR-TB | lineage4.6.2.2 | None | ERR4831617 | MDR-TB | lineage2.2.1 | None | ERR502481 | Pre-XDR-TB | lineage4.9 | None | ERR4831546 | HR-TB | lineage2.2 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | ERR4831618 | MDR-TB | lineage2.1 | None | ERR4831620 | MDR-TB | lineage2.2.1 | None | ERR4831621 | MDR-TB | lineage2.2.1.1 | None | ERR4872269 | XDR-TB | lineage2.2.1 | None | ERR4831657 | MDR-TB | lineage2.2.1 | None | SRR6831950 | Other | lineage4.3.3 | None | SRR6832249 | Other | lineage2.2.1 | None | SRR6785268 | Sensitive | lineage4.2.1 | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | ERR294248 | HR-TB | None | SRR6785227 | Other | lineage2.2.1 | None | SRR6785263 | Sensitive | lineage2.2.1 | None | SRR6785413 | Other | lineage2.2.1 | None | SRR6789624 | MDR-TB | lineage4.1 | None | SRR6789626 | Other | None | SRR6982239 | HR-TB | lineage4.1.1.3 | None | SRR6832787 | RR-TB | lineage2.2.1 | None | SRR6982246 | Sensitive | lineage4 | None | SRR6832644 | Other | lineage4.3.3 | None | SRR6982324 | Sensitive | lineage3.1.1 | None | ERR323035 | Sensitive | lineage4.9 | None | ERR294266 | HR-TB | None | ERR502942 | Sensitive | lineage4.9 | None | ERR323036 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR502532 | HR-TB | None | ERR502889 | Other | None | ERR502908 | HR-TB | lineage2.2.1 | None | ERR323038 | HR-TB | None | ERR5311081 | HR-TB | None | SRR9971270 | RR-TB | lineage2.2.1 | None | ERR3275941 | RR-TB | lineage4.3 | nl | ERR5311099 | HR-TB | None | ERR5311090 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496471 | Sensitive | None | SRR8217918 | HR-TB | None | SRR7496523 | Other | lineage4.7 | None | SRR7496517 | Other | None | SRR7496509 | Other | None | SRR9970980 | Other | lineage4.1.2 | None | SRR9613550 | HR-TB | lineage4.1.2.1 | None | SRR9970981 | RR-TB | lineage4.3.2.1 | None | SRR7535082 | Sensitive | lineage4 | None | SRR9970978 | Sensitive | lineage4.1.2 | None | SRR7535086 | Other | None | SRR9970979 | Sensitive | lineage4.8 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR9971041 | MDR-TB | lineage4.3.3 | None | ERR323048 | Pre-XDR-TB | lineage4.9 | None | SRR9971112 | Other | lineage2.2.1 | None | SRR7755654 | Pre-XDR-TB | lineage4.2.1 | None | SRR9971113 | Other | lineage2.2.1 | None | ERR323044 | HR-TB | lineage4.3.4.2.1 | None | ERR323041 | HR-TB | None | ERR323045 | HR-TB | None | SRR7755706 | MDR-TB | lineage4.2.1 | None | ERR323043 | HR-TB | None | ERR323055 | HR-TB | None | ERR323063 | HR-TB | None | ERR323057 | Sensitive | lineage4.9 | None | ERR323054 | HR-TB | lineage3.1 | None | SRR7851312 | Other | La1.2 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR323085 | Sensitive | lineage4 | None | ERR323066 | Sensitive | lineage4 | None | ERR323108 | HR-TB | lineage4 | None | DRR185000 | Other | lineage1.1.1.1 | None | ERR067681 | HR-TB | None | ERR036207 | Other | lineage4.9 | None | ERR323107 | Other | lineage4 | None | ERR067712 | HR-TB | lineage4 | None | ERR1063862 | HR-TB | None | ERR1034634 | HR-TB | None | ERR1034652 | Other | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1023295 | HR-TB | lineage4.1.2.1 | None | ERR1035122 | Sensitive | None | ERR1035157 | Other | lineage4.9 | None | ERR1063855 | Other | lineage4 | None | ERR1063857 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR10796630 | HR-TB | None | ERR10762297 | MDR-TB | lineage4.2.1 | None | ERR10796597 | Other | lineage4 | None | ERR1063896 | Sensitive | None | ERR11049020 | Other | lineage4.8 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR108125 | Pre-XDR-TB | lineage4.9 | None | ERR10796631 | Other | lineage4.3.4 | None | ERR108471 | HR-TB | lineage4 | None | ERR1199132 | Sensitive | lineage4.6.1.1 | None | ERR137286 | Sensitive | lineage4 | None | ERR1213935 | Other | lineage4.1.2.1 | pe | ERR133986 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283017 | HR-TB | None | ERR3283013 | MDR-TB | lineage4 | None | ERR3283008 | Other | lineage4.9 | None | ERR3283010 | Other | La1 | None | ERR3283025 | HR-TB | None | ERR3283014 | HR-TB | None | ERR3283021 | HR-TB | None | ERR3283032 | HR-TB | None | ERR3283028 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283024 | Other | None | ERR3283027 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283041 | Other | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR3283049 | Sensitive | lineage4.9 | None | ERR3283048 | HR-TB | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3283058 | Other | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439265 | Other | lineage4.9 | None | ERR3439432 | Other | None | ERR3445501 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445503 | HR-TB | None | ERR3468488 | RR-TB | La1.8.1 | None | ERR3797024 | Other | lineage4.9 | None | ERR3470647 | Other | lineage3 | None | ERR3468544 | HR-TB | None | ERR3797016 | HR-TB | None | ERR3797014 | Other | None | ERR3797015 | HR-TB | None | ERR3797036 | HR-TB | None | ERR3797017 | Other | None | ERR3797023 | HR-TB | La1.8.1 | None | ERR3797043 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797058 | Other | lineage4.9 | None | ERR3797048 | HR-TB | None | ERR3797044 | Other | None | ERR3797063 | HR-TB | None | ERR3797060 | Other | La1.8.1 | None | ERR3797061 | Other | None | ERR3797069 | Other | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797073 | HR-TB | La1.8.1 | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797081 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797084 | Sensitive | lineage4.9 | None | ERR3797083 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797086 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3801503 | Sensitive | lineage4.6.2.2 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR403298 | HR-TB | lineage4 | None | ERR4024991 | Other | None | ERR387051 | HR-TB | None | ERR405190 | Sensitive | lineage4.9 | None | ERR4188350 | HR-TB | None | ERR405191 | Other | lineage4.9 | None | ERR405209 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4178161 | Other | lineage4.4.1.1 | None | ERR4188247 | HR-TB | None | ERR4407452 | Sensitive | lineage3 | None | ERR4769408 | Other | La1.3 | None | ERR4407463 | HR-TB | None | ERR473303 | Sensitive | lineage4.9 | None | ERR473332 | Other | lineage4 | None | ERR473367 | Sensitive | lineage4.9 | None | ERR4596902 | HR-TB | lineage3 | None | ERR473311 | Sensitive | lineage4.9 | None | ERR473323 | HR-TB | lineage4.9 | None | ERR473334 | HR-TB | lineage4.9 | None | ERR4769419 | Other | lineage4.9 | None | ERR4769417 | Pre-XDR-TB | lineage4.9 | None | ERR4769472 | Other | lineage4.9 | None | ERR4769433 | Pre-XDR-TB | lineage4.9 | None | ERR4769446 | Sensitive | lineage4.9;La1.3 | None | ERR4769444 | HR-TB | lineage4.9 | None | ERR4769508 | RR-TB | lineage4.9 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769493 | Pre-XDR-TB | lineage4.9;La1.3 | None | ERR4769530 | RR-TB | lineage4.9 | None | ERR4769514 | Other | La1.3 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4769521 | HR-TB | None | ERR4769550 | Other | lineage4.9;La1.3 | None | ERR4769555 | Other | La1.3 | None | ERR4797184 | Sensitive | lineage4 | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4796584 | Sensitive | lineage1.2.2.2 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4796577 | MDR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4797193 | HR-TB | lineage1.1.2 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4797264 | Sensitive | None | ERR4797474 | Other | None | ERR4798139 | Sensitive | lineage1.1.2 | None | ERR4798099 | Other | None | ERR4798262 | HR-TB | La1 | None | ERR4799378 | Sensitive | lineage4 | None | ERR4798406 | HR-TB | None | ERR4799025 | Pre-XDR-TB | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4799171 | Pre-XDR-TB | lineage4.8 | None | ERR4799513 | HR-TB | lineage2.2 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800102 | Sensitive | lineage3.1.2.1 | None | ERR4800527 | MDR-TB | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4810741 | HR-TB | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811105 | HR-TB | None | ERR4811022 | HR-TB | None | ERR5336148 | Other | None | ERR4811142 | MDR-TB | None | ERR5865378 | Pre-XDR-TB | lineage2.2.1 | None | ERR5917710 | Other | lineage4.1.2.1 | None | ERR5908228 | Other | lineage4.3.3 | None | ERR6197021 | MDR-TB | lineage4.7;lineage4.3.4.2 | None | ERR5987249 | MDR-TB | lineage4.3.2 | None | ERR6197032 | Other | lineage4.9 | None | ERR6197023 | MDR-TB | lineage4.7;lineage4.3.4.2 | None | ERR6197027 | Other | lineage4.7 | None | ERR6197025 | Other | lineage4.7 | None | ERR6197029 | Other | lineage4.7 | None | ERR6197033 | Other | lineage4.7 | None | ERR6197031 | Other | lineage4.7 | None | ERR6197043 | MDR-TB | lineage4.3.4.2 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6326069 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR6359069 | Other | lineage4.9 | None | ERR6359070 | Other | lineage4.9 | None | ERR6358837 | HR-TB | None | ERR6358951 | HR-TB | lineage4 | None | ERR6358979 | Other | None | ERR6359045 | HR-TB | None | ERR6866639 | Other | None | ERR6359074 | HR-TB | lineage4.9 | None | ERR6866022 | Other | None | ERR6865446 | Other | lineage4.4.1.1 | None | ERR6866125 | Sensitive | lineage4.1.2.1 | None | ERR6866410 | Sensitive | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR702404 | HR-TB | None | ERR702406 | HR-TB | None | ERR6866807 | HR-TB | lineage4 | None | ERR736848 | HR-TB | None | ERR736834 | Sensitive | lineage4 | None | ERR736837 | Other | lineage4.9 | None | ERR736835 | HR-TB | None | ERR736839 | Other | None | ERR736875 | HR-TB | lineage4 | None | ERR736856 | HR-TB | lineage4 | None | ERR736872 | Sensitive | lineage4 | None | ERR736867 | HR-TB | None | ERR736874 | HR-TB | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR751326 | Sensitive | lineage4 | None | ERR751338 | Other | lineage5.1.1 | None | ERR752012 | HR-TB | lineage1.1.1.1 | None | ERR760733 | MDR-TB | lineage4.1.2.1.1 | None | ERR772255 | MDR-TB | lineage4.3.2 | None | ERR7821123 | Other | lineage1.1.3.2 | None | ERR7821126 | Sensitive | lineage1.1.3.2 | None | ERR7821163 | Other | lineage2.2.1 | None | ERR8976043 | HR-TB | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR7911670 | Pre-XDR-TB | lineage2.2 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR8665619 | Pre-XDR-TB | lineage2.2.1 | None | ERR9117709 | HR-TB | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR9117826 | Other | lineage3.1.3 | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9119483 | Pre-XDR-TB | lineage5.2 | None | ERR9119096 | Other | lineage4.3.3 | None | ERR9119669 | HR-TB | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119525 | MDR-TB | lineage4.6.2.2 | None | ERR9786076 | Sensitive | lineage3 | None | ERR9120012 | MDR-TB | lineage4.3.2 | None | ERR9125132 | Sensitive | lineage1.2.1.2.1 | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786440 | Other | lineage4.1 | None | ERR9786443 | Sensitive | lineage4.8 | None | ERR9786444 | Sensitive | lineage4.8 | None | ERR9786526 | Other | lineage4.8;lineage4.1 | None | ERR9786525 | Other | lineage4.8;lineage4.1 | None | ERR9786515 | Other | lineage4.1.2.1 | None | ERR9786569 | Other | lineage4.8 | None | ERR9786592 | Sensitive | lineage4.3.4.2 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786639 | Sensitive | lineage4.8 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786627 | Other | lineage4.1.2.1 | None | ERR9786671 | Other | None | ERR9786656 | Sensitive | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9786711 | Sensitive | lineage4.6.2.2 | None | ERR987765 | Sensitive | lineage4.6.1.1 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9787165 | Other | lineage6 | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9787197 | Other | None | ERR9787256 | Other | lineage6.1.3 | None | ERR9787030 | Sensitive | lineage6 | None | ERR9787061 | Sensitive | lineage6.2.3 | None | ERR990545 | Other | lineage3 | None | ERR9896144 | Other | lineage3 | None | ERR9896153 | RR-TB | lineage4.4.1.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | SRR069978 | Pre-XDR-TB | lineage2.2.2 | None | SRR1013610 | HR-TB | lineage4 | None | SRR069989 | HR-TB | lineage2 | None | SRR1048994 | HR-TB | lineage4.9 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR10315567 | Other | lineage2.2.1 | None | SRR10315751 | MDR-TB | lineage4.8 | None | SRR1048965 | Pre-XDR-TB | lineage2.2.1 | None | SRR10315551 | Sensitive | lineage2.2.1 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR10808805 | Sensitive | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR1144744 | HR-TB | lineage2.2.1 | None | SRR10809074 | Sensitive | lineage4 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR11349145 | Pre-XDR-TB | lineage4.4.1.1.1 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR11462861 | Other | La1.8.1 | None | SRR1158918 | Sensitive | lineage4 | None | SRR1163221 | HR-TB | lineage4.1.2.1 | None | SRR1162864 | HR-TB | lineage4.1.2.1 | None | SRR1165423 | Other | lineage4.1.2.1 | None | SRR1165506 | Other | lineage4.1.2.1 | None | SRR1165584 | Other | lineage4.1.2.1 | None | SRR1167384 | Other | lineage4 | None | SRR1166181 | MDR-TB | lineage4 | None | SRR1167055 | Other | lineage4.1.2.1 | None | SRR1169194 | Other | None | SRR1169306 | Other | None | SRR1169249 | Other | La3 | None | SRR1172857 | MDR-TB | None | SRR1172717 | Other | lineage4.9 | None | SRR1172728 | MDR-TB | None | SRR1172807 | Sensitive | lineage4.9 | None | SRR1172817 | HR-TB | None | SRR1172234 | Other | None | SRR1173118 | Other | None | SRR1172951 | Other | None | SRR1173166 | Other | lineage4.9 | None | SRR1173153 | HR-TB | None | SRR1173363 | HR-TB | None | SRR1173218 | Pre-XDR-TB | lineage4.3.3 | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173568 | Other | lineage4.9 | None | SRR1173384 | Other | lineage4 | None | SRR1173453 | Other | lineage4.4.1.1 | None | SRR1173484 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173400 | Other | None | SRR1173767 | HR-TB | lineage4.4.1.1 | None | SRR1173629 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173687 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173706 | Other | lineage4.9 | None | SRR1173778 | Other | None | SRR1173777 | Other | lineage4 | None | SRR1175506 | Sensitive | lineage4.9 | None | SRR1173788 | Other | None | SRR1175049 | RR-TB | None | SRR1175074 | MDR-TB | None | SRR1175487 | Sensitive | lineage4.9 | None | SRR1180148 | Sensitive | lineage4.9 | None | SRR1175513 | Other | lineage4.9 | None | SRR1175512 | Sensitive | lineage4.9 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1180300 | Sensitive | lineage4.9 | None | SRR1180147 | Other | lineage2.2.1.1 | None | SRR1180172 | Other | lineage2.2.1 | None | SRR1180250 | Other | lineage4.9 | None | SRR1180270 | Other | lineage2.2.1 | None | SRR1180391 | Sensitive | lineage4.9 | None | SRR1180319 | Sensitive | lineage4.9 | None | SRR1180345 | Other | lineage4.9 | None | SRR1180375 | Sensitive | lineage4.9 | None | SRR1180312 | Sensitive | lineage4.9 | None | SRR1180355 | Sensitive | lineage4.9 | None | SRR1180399 | Sensitive | lineage4.9 | None | SRR1180440 | Other | lineage4.9 | None | SRR1180406 | Sensitive | lineage4.9 | None | SRR1180410 | Sensitive | lineage4.9;lineage2.2 | None | SRR1180413 | Sensitive | lineage4.9 | None | SRR1180420 | Sensitive | lineage4.9 | None | SRR1180996 | HR-TB | lineage4 | None | SRR1180444 | Sensitive | lineage4.9 | None | SRR1180446 | Other | lineage4.9 | None | SRR1180977 | Sensitive | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1181091 | Other | lineage2.2.1.1 | None | SRR1181251 | Other | lineage2.2.1 | None | SRR1181283 | Sensitive | lineage4.9 | None | SRR1181214 | Other | lineage4.9 | None | SRR1181237 | Sensitive | lineage2.2 | None | SRR1181328 | Other | lineage2.2.1 | None | SRR1181325 | Sensitive | lineage4.9 | None | SRR1181351 | Sensitive | lineage4.9 | None | SRR1181349 | Sensitive | lineage4.4.1.1.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1181368 | Other | lineage4.9 | None | SRR1181390 | Sensitive | lineage2 | None | SRR1181402 | Sensitive | lineage4.9 | None | SRR1183144 | Other | lineage2.2.1 | None | SRR1183054 | Sensitive | lineage4.9 | None | SRR1183106 | Other | lineage2.2.1.1 | None | SRR1183145 | Other | lineage2.2.1 | None | SRR1183965 | Sensitive | lineage4.9 | None | SRR1184021 | Sensitive | lineage4.9 | None | SRR12006550 | Other | lineage1.2.1.2 | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196494 | MDR-TB | None | SRR1196571 | Pre-XDR-TB | lineage4.3.3 | None | SRR1196768 | MDR-TB | None | SRR11972367 | Sensitive | lineage2.2.1 | None | SRR1184024 | Other | lineage2.2.1.1 | None | SRR1184294 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196677 | HR-TB | lineage2 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR13837613 | Sensitive | lineage4.9 | None | SRR12142341 | HR-TB | None | SRR12416840 | MDR-TB | lineage4.9 | None | SRR12416824 | HR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR13180363 | Sensitive | lineage4.1.2.1 | None | SRR13423544 | Other | lineage4.5 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR13861168 | RR-TB | lineage4.9 | None | SRR13861153 | Other | lineage4.9 | None | SRR13861396 | HR-TB | lineage4.9 | None | SRR13861332 | Other | lineage4.9 | None | SRR13861333 | Sensitive | lineage4.9 | None | SRR13861549 | RR-TB | lineage4.9 | None | SRR13861500 | RR-TB | lineage4.9 | None | SRR13861413 | Sensitive | lineage4.9 | None | SRR13861528 | HR-TB | lineage4.9 | None | SRR13861629 | RR-TB | lineage4.9 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR13861713 | RR-TB | lineage4.9 | None | SRR13888750 | Other | La2 | None | SRR1510061 | Sensitive | lineage1.2.1.2.1 | None | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR14782405 | HR-TB | None | SRR14801749 | Sensitive | None | SRR15315871 | Sensitive | lineage4.9 | None | SRR1510066 | Other | lineage1.2.1.2.1 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR15368751 | Sensitive | lineage2.2.1 | None | SRR15368973 | Other | None | SRR15600376 | HR-TB | lineage2.2.1.1 | None | SRR16157123 | Other | lineage4.9 | None | SRR16156804 | RR-TB | lineage4.9 | None | SRR1791696 | Other | La1.8.1 | None | SRR16278274 | Other | La1.4 | None | SRR1640750 | HR-TB | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR1710057 | Other | lineage2.1 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR17567930 | Other | lineage4.4.1.1 | None | SRR17567887 | Sensitive | lineage4.4.1.2 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR1792478 | HR-TB | La1.7.1 | None | SRR18002873 | Pre-XDR-TB | lineage4.4.2;lineage4.2.2;lineage2.2.1 | None | SRR1791747 | Other | La1.8.1 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18003019 | Other | lineage2.2.1 | None | SRR18213721 | Other | lineage4.8 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR19295647 | Sensitive | lineage4.9 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR19303773 | Other | lineage4.6.2.2 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR19303884 | HR-TB | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR20632814 | Sensitive | lineage4 | None | SRR19304036 | HR-TB | None | SRR20969677 | HR-TB | lineage2 | None | SRR20969542 | Other | lineage4.4.2 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR21240055 | Other | lineage4.1.2.1 | None | SRR21469201 | Other | La1.7.1 | None | SRR2101590 | Sensitive | lineage4.1.2 | None | SRR21469200 | Other | La1.7.1 | None | SRR22424765 | MDR-TB | lineage4 | None | SRR8692790 | RR-TB | lineage4 | None | SRR22424787 | Sensitive | lineage4.9 | None | ERR11081258 | Other | lineage4.8 | None | ERR11081257 | Other | lineage4.8 | None | ERR11081864 | Other | lineage3 | None | SRR9588018 | MDR-TB | lineage4.4.1.1 | None | SRR8692782 | Other | lineage4.9 | None | SRR8692868 | Sensitive | lineage4.9 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR8692825 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR8692824 | Other | lineage4.9 | None | ERR4815604 | HR-TB | None | SRR8692888 | Other | lineage4.9 | None | SRR8692887 | Other | None | SRR3675464 | HR-TB | lineage4.1 | None | ERR176778 | HR-TB | None | ERR176779 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR3675475 | Other | lineage4.1.1.3 | None | SRR3675465 | HR-TB | None | SRR6325445 | HR-TB | None | ERR550636 | MDR-TB | lineage4.1.1.3 | None | ERR1035239 | HR-TB | None | ERR4814312 | Other | lineage4 | None | ERR4815298 | Other | lineage4.3.4.2.1 | None | SRR3675482 | HR-TB | None | ERR158583 | HR-TB | None | SAMN02585910 | Other | lineage2.2.1 | None | ERR4815310 | Other | None | ERR779852 | Sensitive | lineage4.9;lineage4.8.1;lineage4.1.1 | None | SRR3675502 | Other | None | ERR4814352 | HR-TB | lineage2.2.1 | None | ERR161033 | HR-TB | None | SRR3675489 | Sensitive | lineage3 | gb | SRR3416776 | Other | lineage2.1 | None | ERR161034 | Other | lineage4.3.4.2.1 | None | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3675486 | HR-TB | None | ERR4814536 | MDR-TB | lineage3;lineage2.1 | None | ERR181744 | HR-TB | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675230 | RR-TB | lineage3 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675221 | HR-TB | None | ERR4815471 | Other | lineage4.9 | None | ERR4814734 | Other | lineage1.2.1.1 | None | SRR3675236 | HR-TB | None | ERR702405 | Sensitive | lineage2.1 | None | SRR3675232 | Other | lineage4.1.2.1 | None | ERR1750907 | RR-TB | None | SRR3675234 | Other | None | ERR181824 | HR-TB | lineage4 | None | SRR3675246 | Sensitive | lineage4 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR176568 | Other | lineage4.3 | None | ERR176549 | Other | lineage4.3.4.2.1 | None | ERR4813263 | MDR-TB | lineage4.8 | None | SRR3675280 | HR-TB | lineage4.9 | None | ERR3275201 | Sensitive | lineage4.8 | nl | SRR3675284 | HR-TB | lineage4.9 | None | ERR4815550 | Other | lineage4 | None | ERR176643 | HR-TB | None | SRR3675311 | Other | None | ERR4814976 | Other | lineage4.9 | None | ERR176651 | HR-TB | None | ERR4815752 | Other | lineage4.9 | None | SRR3675312 | HR-TB | lineage4 | None | ERR181887 | HR-TB | None | SRR3675383 | HR-TB | None | ERR4815022 | Other | lineage3.1.2.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | ERR4816964 | Other | lineage4.9 | None | SRR3675456 | HR-TB | None | ERR176751 | HR-TB | None | SRR3675503 | Sensitive | lineage4.9 | None | ERR2229542 | Other | lineage4.8 | None | SRR3675510 | Other | None | ERR2229084 | Sensitive | lineage4.8 | dk | ERR4816991 | Sensitive | lineage4.9 | None | ERR4816999 | Other | None | ERR2027263 | Other | lineage4 | None | SRR3675545 | HR-TB | None | ERR4816151 | Other | lineage4.8 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR4817037 | Other | lineage4.9 | None | ERR212033 | HR-TB | None | SRR3675552 | RR-TB | lineage4.9 | None | SRR3675550 | Other | None | ERR212001 | HR-TB | None | ERR4817478 | Other | lineage3 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR4816322 | Other | lineage4.9 | None | ERR212034 | HR-TB | None | SRR3675555 | HR-TB | None | ERR4817060 | RR-TB | None | SRR3675558 | HR-TB | None | ERR212123 | Other | None | SRR3675572 | Other | None | ERR4817069 | RR-TB | None | SRR3675574 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR4816417 | Other | lineage4.9 | None | ERR4816470 | Other | lineage3 | None | ERR4816466 | HR-TB | None | ERR212138 | HR-TB | lineage4 | None | SRR3675571 | HR-TB | None | ERR3275709 | HR-TB | lineage3 | nl | ERR2229198 | MDR-TB | lineage4.8 | None | SRR3742667 | Sensitive | lineage4.9 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR216965 | HR-TB | lineage4.9 | None | ERR4816551 | HR-TB | lineage4.1.1.3 | None | SRR5341384 | Sensitive | lineage4.9 | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR4816585 | Other | lineage2.2 | None | ERR4816656 | HR-TB | None | SRR3742665 | HR-TB | None | ERR2229791 | RR-TB | lineage4.9 | None | ERR4816762 | Other | lineage4;lineage2 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4816852 | Other | lineage4.9 | None | ERR553132 | MDR-TB | lineage4.1.2.1 | None | ERR4817692 | HR-TB | lineage4;lineage1.1.2 | None | ERR4817735 | Other | lineage4.8 | None | ERR4818710 | Sensitive | lineage4.9 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR4817667 | HR-TB | lineage4.8 | None | ERR4817893 | Other | lineage4.8;La3 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4817915 | RR-TB | lineage4.9 | None | SRR7496472 | Other | None | ERR4818021 | Other | La1.8.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4818831 | Other | lineage3 | None | ERR234659 | HR-TB | None | ERR2229143 | Other | lineage4.1.1 | None | ERR1035162 | Other | None | ERR2432997 | Other | lineage4.8 | None | ERR4818274 | Other | lineage4 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR4819051 | Other | lineage4 | None | ERR245758 | Other | lineage4.9.1 | None | ERR2512606 | MDR-TB | lineage3 | None | ERR4818522 | Pre-XDR-TB | lineage3 | None | ERR4818393 | RR-TB | lineage3 | None | ERR4818394 | Other | lineage4.9 | None | ERR4818929 | HR-TB | None | ERR2513259 | Other | lineage3 | None | ERR4818561 | HR-TB | lineage4 | None | ERR2446570 | Sensitive | lineage4.8 | nl | ERR4818607 | Sensitive | lineage4.9 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007188 | Other | lineage4 | None | ERR4818615 | Other | None | SRR5007170 | RR-TB | lineage4.9 | None | SRR5341453 | Sensitive | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | ERR4817554 | Other | lineage1.1.1 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341387 | Other | lineage4 | None | SAMEA3501067 | RR-TB | lineage4.8 | None | SRR5153091 | HR-TB | lineage4.3.3 | None | ERR4820723 | RR-TB | lineage4.4.1.1 | None | ERR4819357 | Other | lineage4.9 | None | ERR4819280 | Sensitive | lineage4 | None | ERR4819305 | RR-TB | lineage4.9 | None | SRR5341412 | Pre-XDR-TB | lineage3 | None | SRR5341396 | Other | lineage4 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR5341400 | HR-TB | lineage4 | None | ERR4819322 | Other | lineage4;lineage1.1 | None | ERR2514327 | HR-TB | lineage4.8 | None | ERR4819430 | Sensitive | lineage4.1.2.1 | None | SRR5341418 | Other | None | ERR4819546 | HR-TB | lineage3 | None | SRR5341425 | Other | lineage4 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | ERR4820335 | Other | lineage4.1.2.1 | None | ERR4820410 | Pre-XDR-TB | lineage3.1.1 | None | ERR1035138 | MDR-TB | None | SRR5341432 | HR-TB | lineage4 | None | SAMN02414850 | Other | lineage4.1.2.1 | None | SRR5341455 | Sensitive | lineage4 | None | SRR5341267 | Pre-XDR-TB | lineage3 | None | ERR4819772 | RR-TB | lineage1.1.3.1 | None | SRR5341299 | Sensitive | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341298 | Sensitive | lineage4 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341300 | Other | lineage4 | None | ERR4819809 | HR-TB | lineage4.6.2.2 | None | ERR2514692 | Other | None | ERR1023509 | Other | None | SRR5341303 | RR-TB | lineage4 | None | ERR4819863 | RR-TB | lineage4.9 | None | ERR2514821 | Other | lineage2.2.1 | None | SRR5341302 | HR-TB | None | SRR5341308 | Sensitive | lineage4 | None | ERR4819932 | Other | lineage4.7 | None | ERR4819933 | Other | lineage4.9 | None | SRR5341313 | HR-TB | None | SAMEA3501070 | RR-TB | lineage4.8 | None | SRR5341341 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341310 | Other | lineage1.1.2 | None | SRR5341315 | Sensitive | None | SRR5341332 | Pre-XDR-TB | lineage3 | None | SRR5341333 | HR-TB | None | ERR6359082 | Other | lineage4.9 | None | SRR5341461 | Sensitive | lineage4 | None | ERR2515228 | Other | lineage2.2.1 | None | SRR5341465 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341366 | Sensitive | lineage4 | None | ERR4820854 | Other | lineage4.1.2.1 | None | SRR5341467 | Other | lineage4 | None | SRR5341469 | Other | lineage4 | None | ERR2693239 | HR-TB | None | ERR4821057 | HR-TB | lineage4 | None | ERR4821053 | Other | lineage3 | None | SAMEA3501052 | RR-TB | lineage4.8 | None | SRR6045450 | Other | lineage4.9 | None | SRR6045519 | HR-TB | None | ERR2693230 | Other | None | ERR4821143 | RR-TB | lineage4.9 | None | SRR6045526 | HR-TB | None | ERR502511 | Sensitive | lineage4.9;lineage2.1 | None | SRR6045516 | Other | lineage3.1.1 | None | ERR2693254 | Other | None | ERR2693257 | Other | None | ERR4821172 | RR-TB | lineage4.9 | None | ERR2706950 | MDR-TB | lineage5.2 | cd | SRR6046117 | RR-TB | lineage4.9 | None | ERR278594 | HR-TB | None | ERR4821179 | Other | lineage4.1.2.1 | gb | SRR6045603 | RR-TB | lineage4.1.1.3 | None | ERR4821259 | Sensitive | lineage4.9 | None | ERR4822104 | RR-TB | lineage3 | None | ERR4821655 | Sensitive | lineage4 | None | ERR4821747 | MDR-TB | lineage4.9;lineage4.2.1 | None | SRR5709967 | MDR-TB | lineage2.2.1 | None | ERR2693227 | Other | lineage4.9 | None | SRR6045555 | HR-TB | None | SRR5709926 | MDR-TB | lineage2.2.1 | None | SRR6046133 | HR-TB | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045664 | Other | lineage4.2.1 | None | SRR6046151 | Sensitive | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6045817 | Sensitive | lineage4.8 | gb | SRR6045909 | Other | lineage4.8 | None | SRR6045892 | Sensitive | None | SRR6044780 | Other | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR5818672 | Other | lineage1.2.2.2 | None | SRR6044790 | HR-TB | None | SRR6044890 | Other | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6044952 | RR-TB | lineage4.9 | None | SRR6045957 | Other | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6044983 | Other | lineage3.1.1 | None | SRR6045952 | HR-TB | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6045233 | HR-TB | None | SRR6045205 | Sensitive | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6046066 | HR-TB | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6045327 | HR-TB | None | SRR6045399 | Other | None | SRR6046210 | Other | lineage4 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR6325442 | HR-TB | None | SRR6046253 | HR-TB | lineage4.9 | None | SRR6046305 | Other | lineage4.9 | None | SRR6046281 | Other | lineage4.9 | None | SRR6046259 | Sensitive | lineage4.9 | None | SRR6046362 | HR-TB | None | SRR6325444 | HR-TB | None | SRR6046385 | Other | lineage4.9 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046397 | Other | None | ERR2446563 | Other | lineage2.2.1 | nl | ERR3275196 | Other | lineage2.2.1 | nl | SRR6046482 | HR-TB | None | SRR6046460 | HR-TB | None |
---|