Rv0668 - c.-375G>C
Drug resistance types
50 Sensitive
37 RR-TB
126 HR-TB
38 MDR-TB
40 Pre-XDR-TB
1 XDR-TB
85 Other
lineage Counts
| lineage | Count |
|---|---|
| La2 | 1 |
| lineage1.1.1 | 2 |
| lineage4.3.3 | 4 |
| lineage2.2.1 | 81 |
| 62 | |
| lineage4.9 | 53 |
| lineage4.4.2;lineage4.2.2;lineage2.2.1 | 1 |
| lineage4.4 | 1 |
| La1.4 | 1 |
| lineage2.2.2 | 19 |
| lineage4.1.1.3 | 4 |
| lineage3 | 14 |
| lineage2.2.1.1 | 4 |
| lineage3.1.3 | 1 |
| lineage4.8 | 8 |
| lineage1.2.1.2 | 1 |
| lineage3.1.2 | 1 |
| lineage4 | 36 |
| lineage4.3.4 | 2 |
| lineage4.3.4.2.1 | 4 |
| lineage3.1.2.1 | 2 |
| lineage4.1.2.1 | 3 |
| lineage3.1 | 1 |
| lineage2.1 | 1 |
| lineage4.5 | 4 |
| lineage4.6.2.2 | 1 |
| lineage4;lineage2 | 1 |
| lineage2.2.2;lineage2.2.1 | 2 |
| lineage1.1.2 | 2 |
| lineage6.3.1 | 1 |
| lineage4.1.1.3.1 | 3 |
| lineage4.2.2.1 | 1 |
| lineage4.4.1.1 | 2 |
| lineage1.2.1.2.1 | 1 |
| lineage3.1.1 | 3 |
| lineage4.2.2.2 | 1 |
| lineage1.2.2.2 | 1 |
| lineage4.3.1.1 | 1 |
| lineage4.2.1.1 | 1 |
| lineage4.7 | 1 |
| lineage4.2.1 | 1 |
| lineage4.4.2 | 1 |
| La1.2 | 1 |
| lineage4.4.1.2 | 1 |
| lineage2.2 | 22 |
| La1.8.1 | 3 |
| lineage4;lineage3.1 | 1 |
| lineage6 | 3 |
| La1 | 1 |
| lineage4.6.5 | 2 |
| lineage4.6.1.1 | 1 |
| lineage5.1.1 | 3 |
| lineage4.3.2.1 | 1 |
| lineage4.3 | 1 |
| lineage4.3.4.2 | 1 |
| lineage6.1.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 377 |
Geographic prevalence
Country level data for this variant is available for 21 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR13888750 | Other | La2 | None | SRR14066533 | Sensitive | lineage1.1.1 | None | SRR14801652 | MDR-TB | lineage4.3.3 | None | SRR15316430 | Sensitive | lineage2.2.1 | None | SRR15315797 | RR-TB | lineage2.2.1 | None | SRR16156832 | RR-TB | None | SRR16156188 | HR-TB | lineage4.9 | None | SRR16157123 | Other | lineage4.9 | None | SRR18002873 | Pre-XDR-TB | lineage4.4.2;lineage4.2.2;lineage2.2.1 | None | SRR16627752 | RR-TB | lineage4.4 | None | SRR16278274 | Other | La1.4 | None | SRR1735596 | RR-TB | lineage4.9 | None | SRR18002903 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002875 | MDR-TB | lineage2.2.2 | None | SRR18002881 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002976 | Other | lineage2.2.1 | None | SRR18002947 | MDR-TB | lineage2.2.1 | None | SRR18002998 | Pre-XDR-TB | lineage2.2.2 | None | SRR18003049 | Other | lineage2.2.1 | None | SRR18003024 | RR-TB | lineage2.2.1 | None | SRR18003042 | Other | lineage2.2.1 | None | SRR18003004 | Pre-XDR-TB | lineage2.2.2 | None | SRR18911231 | Sensitive | lineage4.1.1.3 | None | SRR18003047 | MDR-TB | lineage2.2.1 | None | SRR18213736 | MDR-TB | lineage3 | None | SRR18909918 | Other | lineage2.2.1.1 | None | SRR19303931 | Other | lineage2.2.1 | None | SRR18913742 | Sensitive | lineage3.1.3 | None | SRR19303820 | RR-TB | lineage4.8 | None | SRR3675502 | Other | None | SRR20969475 | Other | lineage1.2.1.2 | None | SRR21277281 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175249 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675475 | Other | lineage4.1.1.3 | None | ERR4815310 | Other | None | ERR4814356 | Pre-XDR-TB | lineage3.1.2 | None | SRR21031744 | Sensitive | lineage2.2.1 | None | ERR176778 | HR-TB | None | ERR176779 | HR-TB | None | ERR158583 | HR-TB | None | SRR3675489 | Sensitive | lineage3 | gb | ERR4814639 | HR-TB | lineage4 | None | SAMN02360583 | HR-TB | lineage2.2.2 | None | ERR181744 | HR-TB | None | SRR6280200 | Sensitive | lineage2.2.1 | cn | ERR161039 | Sensitive | lineage4.3.4 | None | SRR3619841 | Pre-XDR-TB | lineage2.2.1 | None | SRR3618864 | Pre-XDR-TB | lineage2.2.1 | None | SRR3675284 | HR-TB | lineage4.9 | None | ERR4815800 | Other | lineage4.8 | None | SRR3675280 | HR-TB | lineage4.9 | None | SRR3675230 | RR-TB | lineage3 | None | ERR181824 | HR-TB | lineage4 | None | ERR176518 | Sensitive | lineage4.3.4.2.1 | None | ERR181887 | HR-TB | None | ERR4815550 | Other | lineage4 | None | ERR176651 | HR-TB | None | ERR4815022 | Other | lineage3.1.2.1 | None | SAMEA3501073 | RR-TB | lineage4.8 | None | SRR6280295 | Sensitive | lineage2.2.1 | cn | SRR3675456 | HR-TB | None | ERR4815909 | Other | lineage4.8 | None | SAMN02360581 | HR-TB | lineage2.2.1 | None | SRR3675509 | Other | lineage4.9 | None | ERR2027257 | Other | lineage4.1.2.1 | None | SAMN02360556 | Pre-XDR-TB | lineage2.2.2 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR212138 | HR-TB | lineage4 | None | ERR212123 | Other | None | ERR4816417 | Other | lineage4.9 | None | SRR3675552 | RR-TB | lineage4.9 | None | SRR3675550 | Other | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR212034 | HR-TB | None | SRR3675555 | HR-TB | None | ERR212125 | HR-TB | lineage4 | None | ERR2446509 | Other | lineage3 | nl | ERR216965 | HR-TB | lineage4.9 | None | ERR4816548 | MDR-TB | lineage4.5 | None | ERR4815815 | Sensitive | lineage4 | None | SAMN02360590 | MDR-TB | lineage2.2.2 | None | ERR4816702 | RR-TB | lineage4.6.2.2 | None | ERR4816756 | RR-TB | None | ERR4816762 | Other | lineage4;lineage2 | None | SRR3742667 | Sensitive | lineage4.9 | None | SAMN02360586 | HR-TB | lineage2.2.1 | None | SAMN02360571 | HR-TB | lineage2.2.2;lineage2.2.1 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR2229791 | RR-TB | lineage4.9 | None | ERR4817292 | Sensitive | lineage4.3.4.2.1 | None | ERR2229519 | Sensitive | lineage4.8 | None | ERR4817667 | HR-TB | lineage4.8 | None | SAMN02360570 | Pre-XDR-TB | lineage2.2.1 | None | SAMN02360595 | Pre-XDR-TB | lineage2.2.2 | None | SAMN03246590 | Pre-XDR-TB | lineage2.2.1 | cn | SAMN02398710 | MDR-TB | lineage2.2.2 | None | ERR4817915 | RR-TB | lineage4.9 | None | SAMN02360574 | HR-TB | lineage2.2.1 | None | ERR1035162 | Other | None | SAMN02360591 | Pre-XDR-TB | lineage2.2.2 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR4819051 | Other | lineage4 | None | SAMN02360580 | HR-TB | lineage2.2.1 | None | ERR245675 | Sensitive | lineage1.1.2 | None | ERR2432997 | Other | lineage4.8 | None | ERR4818440 | Other | lineage6.3.1 | None | SRR5007161 | RR-TB | lineage4.1.1.3.1 | None | ERR4818561 | HR-TB | lineage4 | None | SRR5007165 | MDR-TB | lineage3 | None | SRR5007167 | RR-TB | lineage4.1.1.3.1 | None | SRR5007193 | RR-TB | lineage4.1.1.3.1 | None | SRR5007170 | RR-TB | lineage4.9 | None | ERR4817547 | Other | lineage4.2.2.1 | None | ERR4818607 | Sensitive | lineage4.9 | None | ERR2446154 | Sensitive | lineage4.4.1.1 | nl | SRR5341373 | HR-TB | lineage4 | None | ERR3275615 | Sensitive | lineage4.4.1.1 | nl | SRR5153091 | HR-TB | lineage4.3.3 | None | SRR5341400 | HR-TB | lineage4 | None | SRR5341408 | Sensitive | lineage3 | None | ERR4819314 | Other | lineage1.1.1 | None | SRR5341418 | Other | None | SAMN02360564 | Pre-XDR-TB | lineage2.2.1 | None | ERR4819430 | Sensitive | lineage4.1.2.1 | None | ERR2514181 | Other | lineage1.2.1.2.1 | None | SRR6280183 | Sensitive | lineage2.2.1 | cn | ERR4819546 | HR-TB | lineage3 | None | ERR4820394 | Other | lineage4.3.4.2.1 | None | SRR5341432 | HR-TB | lineage4 | None | SRR5341293 | HR-TB | lineage4 | None | ERR4819910 | Other | lineage4.9 | None | SRR5341313 | HR-TB | None | ERR4821550 | Other | lineage2.2.1 | None | ERR6359082 | Other | lineage4.9 | None | SAMN02360585 | HR-TB | lineage4.5 | None | SAMN02360579 | HR-TB | lineage2.2.1.1 | None | SRR6045516 | Other | lineage3.1.1 | None | SRR6046117 | RR-TB | lineage4.9 | None | SRR5341315 | Sensitive | None | SRR6045603 | RR-TB | lineage4.1.1.3 | None | ERR2693227 | Other | lineage4.9 | None | SRR5818586 | RR-TB | lineage4.2.2.2 | None | SRR6045909 | Other | lineage4.8 | None | SRR6046151 | Sensitive | lineage4.9 | None | SRR5818672 | Other | lineage1.2.2.2 | None | SRR6045795 | HR-TB | lineage2.2.1 | None | SRR5818647 | RR-TB | lineage4.3.4.2.1 | None | SRR6044780 | Other | lineage4.9 | None | SRR6044835 | Sensitive | lineage4 | None | SRR6046482 | HR-TB | None | SRR6044936 | Other | lineage4 | None | SRR6045957 | Other | lineage4.9 | None | SRR6045217 | Other | lineage4 | None | SRR6045359 | Sensitive | lineage4.9 | None | SRR6045424 | Other | lineage1.1.2 | None | SRR6046291 | Other | lineage3 | None | SRR6046382 | HR-TB | lineage2.2.1 | None | SRR6045928 | Other | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6046275 | Other | lineage3.1.1 | None | SRR6046397 | Other | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046815 | Other | lineage3 | None | SRR6046616 | Other | lineage4.3.1.1 | None | SRR6046644 | HR-TB | None | SRR671748 | MDR-TB | lineage2.2.1 | cn | ERR502470 | RR-TB | lineage4.9 | None | SRR6046824 | HR-TB | None | SRR6832178 | HR-TB | lineage4.2.1.1 | None | SRR671793 | Sensitive | lineage2.2.1 | cn | ERR3275190 | Other | lineage3 | nl | SRR6832787 | RR-TB | lineage2.2.1 | None | SRR6832644 | Other | lineage4.3.3 | None | ERR323035 | Sensitive | lineage4.9 | None | ERR502889 | Other | None | SRR7535086 | Other | None | SRR7645906 | Other | lineage2.2.1 | None | SRR7645899 | RR-TB | lineage2.2.1 | None | SRR7645928 | RR-TB | lineage4.7 | None | SRR9971080 | RR-TB | lineage2.2.1 | None | ERR323045 | HR-TB | None | SRR7755649 | MDR-TB | lineage4.2.1 | None | SRR8651633 | Pre-XDR-TB | lineage4.4.2 | None | SRR7851312 | Other | La1.2 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR1034634 | HR-TB | None | DRR184982 | RR-TB | lineage2.2.1 | None | ERR067712 | HR-TB | lineage4 | None | ERR1023502 | MDR-TB | lineage2.2.1 | None | ERR067681 | HR-TB | None | ERR1063839 | HR-TB | lineage2.2 | None | ERR1034652 | Other | None | ERR10796565 | RR-TB | lineage4.9 | None | ERR1063862 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063857 | HR-TB | None | ERR1063858 | HR-TB | None | ERR10796594 | Other | lineage4.9 | None | ERR10796591 | MDR-TB | lineage4.9 | None | ERR10796598 | RR-TB | lineage4.9 | None | ERR3283028 | Other | None | ERR3283008 | Other | lineage4.9 | None | ERR3283021 | HR-TB | None | ERR10796627 | Other | lineage4 | None | ERR133986 | HR-TB | None | ERR3283006 | RR-TB | lineage4.9 | None | ERR3283014 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3445501 | HR-TB | None | ERR3283031 | HR-TB | None | ERR3283040 | HR-TB | None | ERR3283043 | Other | lineage4.9 | None | ERR3283051 | Other | lineage4.9 | None | ERR3283057 | HR-TB | lineage4 | None | ERR3439432 | Other | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283041 | Other | lineage4.9 | None | ERR3283049 | Sensitive | lineage4.9 | None | ERR3283047 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3445502 | HR-TB | lineage4 | None | ERR3445503 | HR-TB | None | ERR3468578 | Other | La1.8.1 | None | ERR3797060 | Other | La1.8.1 | None | ERR3797047 | HR-TB | lineage4 | None | ERR3797048 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797063 | HR-TB | None | ERR3797080 | HR-TB | lineage4.9 | None | ERR3797064 | Sensitive | None | ERR3797081 | Sensitive | lineage4 | None | ERR4769419 | Other | lineage4.9 | None | ERR3797086 | Other | lineage4.9 | None | ERR3797087 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4596902 | HR-TB | lineage3 | None | ERR3803778 | Other | lineage6 | None | ERR387051 | HR-TB | None | ERR403298 | HR-TB | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR4769472 | Other | lineage4.9 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4769521 | HR-TB | None | ERR4796472 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798262 | HR-TB | La1 | None | ERR4797141 | Sensitive | lineage3 | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4798406 | HR-TB | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4810928 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4811292 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4811318 | MDR-TB | lineage2.2.1 | cn | ERR4811559 | Sensitive | lineage2.2.1 | cn | ERR4811520 | Sensitive | lineage2.2.1 | cn | ERR4811607 | Sensitive | lineage2.2.1 | cn | ERR4811558 | Sensitive | lineage2.2.1 | cn | ERR4811591 | Sensitive | lineage2.2.1 | cn | ERR4811630 | Sensitive | lineage2.2.1 | cn | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR751317 | Sensitive | lineage4.9 | None | ERR751330 | MDR-TB | lineage5.1.1 | None | ERR751338 | Other | lineage5.1.1 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR4811628 | Sensitive | lineage2.2.1 | cn | ERR6866807 | HR-TB | lineage4 | None | ERR736875 | HR-TB | lineage4 | None | ERR751336 | Sensitive | lineage5.1.1 | None | ERR9029360 | MDR-TB | lineage2.2.1 | None | ERR8975532 | HR-TB | lineage4.3.2.1 | None | ERR9786164 | RR-TB | lineage4.1.1.3 | None | ERR9117760 | HR-TB | lineage4.3 | None | ERR9119669 | HR-TB | None | ERR9285979 | RR-TB | lineage3.1.1 | None | ERR9992879 | XDR-TB | lineage4.3.3 | None | ERR9786346 | Sensitive | lineage4.3.4.2 | None | ERR9786986 | HR-TB | lineage4.1.2.1 | None | ERR9787030 | Sensitive | lineage6 | None | ERR9787153 | Other | lineage6.1.3 | None | ERR9787336 | Other | lineage6 | None | SRR1013553 | Pre-XDR-TB | lineage2.2 | None | SRR1013554 | Pre-XDR-TB | lineage2.2 | None | SRR1013577 | MDR-TB | lineage2.2 | None | SRR1013569 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013570 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013568 | Pre-XDR-TB | lineage2.2 | None | SRR1013578 | MDR-TB | lineage2.2 | None | SRR1013582 | Pre-XDR-TB | lineage2.2.1 | None | SRR1013583 | HR-TB | lineage2.2 | None | SRR1013596 | HR-TB | lineage3 | None | SRR1013589 | HR-TB | lineage2.2.1 | None | SRR1013584 | HR-TB | lineage2.2 | None | SRR1013590 | HR-TB | lineage2.2.1 | None | SRR1013599 | HR-TB | None | SRR1013597 | HR-TB | lineage2.2 | None | SRR1013598 | HR-TB | None | SRR1013600 | HR-TB | lineage2.2.1.1 | None | SRR1013604 | HR-TB | lineage2.2.1 | None | SRR1013601 | HR-TB | lineage2.2.1 | None | SRR1013603 | HR-TB | lineage2.2.1 | None | SRR1013607 | HR-TB | lineage2.2 | None | SRR1013610 | HR-TB | lineage4 | None | SRR1013608 | HR-TB | lineage2.2 | None | SRR1013609 | HR-TB | lineage4 | None | SRR1013618 | MDR-TB | None | SRR1013611 | HR-TB | lineage4 | None | SRR1013617 | MDR-TB | None | SRR1013629 | Pre-XDR-TB | lineage2.2 | None | SRR1013621 | Pre-XDR-TB | lineage2.2 | None | SRR1013613 | HR-TB | lineage2.2.1 | None | SRR1013633 | MDR-TB | lineage2.2 | None | SRR1013630 | Pre-XDR-TB | lineage2.2 | None | SRR10315556 | Sensitive | lineage2.2.1 | None | SRR10315579 | Other | lineage2.2.1.1 | None | SRR1047996 | MDR-TB | lineage2.2.2 | None | SRR1048870 | Pre-XDR-TB | lineage2.2 | None | SRR1047993 | HR-TB | lineage2.2.1 | None | SRR1048852 | Pre-XDR-TB | lineage4.9 | None | SRR1048867 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048965 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048886 | MDR-TB | lineage2.2 | None | SRR1048869 | Pre-XDR-TB | lineage2.2.2 | None | SRR1048885 | MDR-TB | None | SRR1048968 | HR-TB | lineage2.2.2;lineage2.2.1 | None | SRR1048966 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048974 | HR-TB | lineage2.2.1 | None | SRR1048982 | HR-TB | None | SRR1048969 | MDR-TB | lineage2.2.2 | None | SRR1048985 | HR-TB | lineage2.2.1 | None | SRR1048987 | HR-TB | lineage2.2.1 | None | SRR1048988 | HR-TB | lineage2.2 | None | SRR1048983 | HR-TB | None | SRR1048992 | HR-TB | lineage2.2.2 | None | SRR1048991 | HR-TB | lineage2.2.2 | None | SRR1048996 | HR-TB | lineage4.5 | None | SRR1048994 | HR-TB | lineage4.9 | None | SRR1048997 | HR-TB | lineage2.2.1 | None | SRR1048995 | HR-TB | lineage4.5 | None | SRR1049004 | MDR-TB | lineage2.2.2 | None | SRR1049006 | MDR-TB | lineage2.2.2 | None | SRR1049007 | Pre-XDR-TB | lineage2.2.2 | None | SRR1049005 | MDR-TB | lineage2.2.2 | None | SRR1049026 | Pre-XDR-TB | None | SRR1049023 | HR-TB | lineage2.2 | None | SRR1049040 | MDR-TB | lineage2.2.1 | None | SRR1049027 | Pre-XDR-TB | None | SRR1049675 | HR-TB | lineage2.2.1 | None | SRR1049041 | MDR-TB | None | SRR1144744 | HR-TB | lineage2.2.1 | None | SRR1140724 | HR-TB | lineage2.2.1 | None | SRR1049674 | HR-TB | lineage2.2.1 | None | SRR1062919 | HR-TB | lineage2.2.1 | None | SRR10869071 | MDR-TB | lineage2.2.1 | None | SRR1175474 | HR-TB | lineage4.9 | None | SRR1144759 | MDR-TB | lineage2.2 | None | SRR1144809 | HR-TB | lineage2.2.1 | None | SRR1173450 | RR-TB | lineage4.9 | None | SRR1175473 | Other | lineage4.9 | None | SRR11462861 | Other | La1.8.1 | None | SRR1173185 | HR-TB | lineage4.9 | None | SRR1173416 | Other | lineage4.9 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1181250 | Other | lineage4.9 | None | SRR1181020 | Other | lineage2.2.1 | None | SRR1184329 | MDR-TB | lineage4.9 | None | SRR1183049 | Other | lineage2.2 | None | SRR1196478 | MDR-TB | lineage4.9 | None | SRR13423649 | Sensitive | lineage2.2.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972367 | Sensitive | lineage2.2.1 | None |
|---|
