lineage | Count |
---|---|
115 | |
lineage4.4.1.1 | 3 |
lineage3.1 | 2 |
lineage4 | 95 |
lineage4.9 | 49 |
lineage4.3.3 | 1 |
lineage2.2.1 | 15 |
lineage2 | 3 |
lineage4.3.4.1 | 2 |
lineage4.2.1 | 4 |
lineage2.2 | 3 |
lineage4.5 | 2 |
lineage4.8 | 3 |
lineage1.1.2 | 2 |
lineage4.1 | 1 |
lineage6.3;lineage2.2.1 | 1 |
lineage4;lineage2.2 | 1 |
lineage2.2.1;La3 | 1 |
lineage4.9;La3 | 1 |
lineage4.1.1.1 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage4.1.1 | 2 |
lineage1.2.1.1 | 1 |
lineage2.1 | 1 |
lineage3.1.2.1 | 1 |
lineage4.1.2.1 | 11 |
lineage3.1.3 | 1 |
lineage4.1;lineage1 | 1 |
lineage4.8;La3 | 1 |
La1.8.1 | 1 |
lineage4.1.1.2 | 1 |
lineage4.1.2 | 1 |
lineage5.1.4 | 1 |
lineage3 | 2 |
lineage4.7 | 2 |
lineage4.3.4.2.1 | 2 |
lineage5.2 | 2 |
lineage4.4.1.2 | 1 |
lineage4.1.2.1;lineage2.2.1 | 1 |
lineage4.1.1.3 | 1 |
lineage4.1.3 | 2 |
lineage4;lineage3.1 | 1 |
lineage1.2.2.2 | 1 |
lineage4.9.1 | 1 |
lineage4.3.4 | 1 |
lineage1.1.3.1 | 1 |
lineage4.6.5 | 2 |
lineage4.3.2 | 1 |
lineage4.6.2.2 | 1 |
lineage6 | 1 |
lineage6.3.1 | 1 |
lineage4.8;lineage4.3.3 | 2 |
lineage4.6.1.2 | 1 |
spoligotype | Count |
---|---|
None | 356 |
ID | Drug resistance | Lineage | Country iso2 | SRR1172234 | Other | None | SRR1169194 | Other | None | SRR1172817 | HR-TB | None | SRR1172728 | MDR-TB | None | SRR1172951 | Other | None | SRR1172844 | MDR-TB | lineage4.4.1.1 | None | SRR1172857 | MDR-TB | None | SRR1173118 | Other | None | SRR1184346 | HR-TB | lineage3.1 | None | SRR1173153 | HR-TB | None | SRR1173330 | Pre-XDR-TB | lineage4 | None | SRR1173363 | HR-TB | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173629 | Other | None | SRR1173788 | Other | None | SRR1175074 | MDR-TB | None | SRR1175507 | MDR-TB | lineage4 | None | SRR1175508 | Other | lineage4.9 | None | SRR1184294 | HR-TB | None | SRR1184298 | Pre-XDR-TB | lineage4.3.3 | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1173384 | Other | lineage4 | None | SRR1173400 | Other | None | SRR1173484 | Other | lineage4 | None | SRR1173562 | HR-TB | lineage4 | None | SRR1173778 | Other | None | SRR1175472 | MDR-TB | lineage4 | None | SRR1175491 | MDR-TB | lineage4 | None | SRR1175496 | HR-TB | lineage4.9 | None | SRR1175500 | MDR-TB | lineage4 | None | SRR1184372 | MDR-TB | None | SRR1184381 | MDR-TB | None | SRR1196494 | MDR-TB | None | SRR1184380 | HR-TB | None | SRR1184388 | Other | None | SRR1196474 | HR-TB | lineage3.1 | None | SRR1196677 | HR-TB | lineage2 | None | SRR1196546 | HR-TB | None | SRR1196566 | HR-TB | None | SRR1196768 | MDR-TB | None | SRR13583478 | HR-TB | lineage4.3.4.1 | None | SRR12142341 | HR-TB | None | SRR12416824 | HR-TB | None | SRR18003019 | Other | lineage2.2.1 | None | SRR15368973 | Other | None | SRR14801749 | Sensitive | None | SRR14802079 | MDR-TB | lineage4.2.1 | None | SRR18910194 | HR-TB | lineage2.2 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR2010299 | Pre-XDR-TB | lineage2.2.1 | None | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | ERR11081258 | Other | lineage4.8 | None | ERR11068570 | Other | lineage4 | None | SRR20969677 | HR-TB | lineage2 | None | SRR20970043 | MDR-TB | lineage2.2.1 | None | SRR25827682 | Other | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR12708416 | Sensitive | lineage4.1 | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | SRR8692863 | Other | lineage4;lineage2.2 | None | SRR26937071 | MDR-TB | lineage2.2.1;La3 | None | SRR26399973 | Other | lineage4.9;La3 | None | SRR25827507 | MDR-TB | lineage4.1.1.1 | None | SRR8692898 | Other | lineage4.9 | None | SRR8692800 | Other | lineage4 | None | SRR26159043 | Other | lineage4.9 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | ERR4815604 | HR-TB | None | SRR3675455 | Sensitive | lineage4 | None | SRR3675472 | Sensitive | lineage4.9 | None | SRR3675473 | Sensitive | lineage4.9 | None | ERR176793 | Other | lineage4.1.1 | None | ERR176778 | HR-TB | None | ERR176779 | HR-TB | None | SRR3675477 | Other | lineage4.9 | None | SRR3675465 | HR-TB | None | ERR4814352 | HR-TB | lineage2.2.1 | None | SRR3675209 | Sensitive | lineage4.9 | None | ERR4814639 | HR-TB | lineage4 | None | SRR3675210 | Sensitive | lineage4.9 | None | SRR3675221 | HR-TB | None | ERR4814734 | Other | lineage1.2.1.1 | None | ERR3275450 | Other | lineage4 | None | SRR3675229 | Other | lineage4 | None | SRR3675236 | HR-TB | None | ERR181824 | HR-TB | lineage4 | None | SRR3675265 | Other | lineage4 | None | SRR3675247 | Other | lineage4.9 | None | SRR3675266 | Sensitive | lineage4.9 | None | SRR3675279 | Other | None | ERR176651 | HR-TB | None | SRR3675292 | Sensitive | lineage4 | None | SRR3675311 | Other | None | SRR3675318 | Other | lineage4.9 | None | ERR181887 | HR-TB | None | ERR212121 | HR-TB | None | SRR3675541 | Sensitive | lineage4.9 | None | SRR3675548 | Sensitive | lineage4.9 | None | SRR3675572 | Other | None | ERR212125 | HR-TB | lineage4 | None | SRR3675577 | Sensitive | lineage4.9 | None | SRR3675387 | Sensitive | None | ERR4815752 | Other | lineage4.9 | None | SRR3675514 | Sensitive | lineage4.9 | None | SRR3675522 | Other | None | SRR3675542 | Other | lineage4.9 | None | ERR4816999 | Other | None | SRR3675547 | Other | lineage4.9 | None | ERR2027263 | Other | lineage4 | None | SRR3675553 | Sensitive | lineage4.9 | None | SRR5341422 | HR-TB | lineage2.1 | None | ERR4816717 | RR-TB | lineage3.1.2.1 | None | ERR212138 | HR-TB | lineage4 | None | SRR3675571 | HR-TB | None | ERR4816466 | HR-TB | None | ERR4816559 | MDR-TB | lineage4.4.1.1 | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR502912 | Other | lineage2.2.1 | None | ERR4819051 | Other | lineage4 | None | ERR4816904 | Sensitive | lineage4.1.2.1 | None | ERR4815815 | Sensitive | lineage4 | None | ERR4817896 | HR-TB | lineage2.2.1 | None | ERR2513121 | Sensitive | lineage3.1.3 | None | ERR4819068 | Sensitive | lineage4.1;lineage1 | None | ERR4817893 | Other | lineage4.8;La3 | None | SRR7496472 | Other | None | ERR4818021 | Other | La1.8.1 | None | ERR4818110 | Sensitive | lineage4.9 | None | ERR234659 | HR-TB | None | ERR4818252 | Other | lineage4.1.1.2 | None | ERR4818615 | Other | None | ERR4818347 | Other | lineage4.1.2 | None | ERR2513283 | Other | lineage5.1.4 | None | ERR2512770 | Other | lineage4.2.1 | None | SRR5007188 | Other | lineage4 | None | SRR5341437 | Sensitive | lineage4.9 | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341396 | Other | lineage4 | None | SRR5341432 | HR-TB | lineage4 | None | ERR2514552 | Sensitive | lineage3 | None | SRR5341302 | HR-TB | None | SRR5341296 | Sensitive | lineage4.9 | None | ERR4819781 | Other | lineage2.2.1 | None | SRR5341293 | HR-TB | lineage4 | None | SRR5341313 | HR-TB | None | ERR2446382 | Other | lineage4 | None | ERR4819932 | Other | lineage4.7 | None | SRR5341315 | Sensitive | None | ERR2652925 | HR-TB | lineage4.9 | None | SRR5341333 | HR-TB | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR2517475 | Other | lineage4 | None | SRR5341323 | Sensitive | lineage4 | None | SRR5341345 | Sensitive | lineage4.9 | None | SRR6045664 | Other | lineage4.2.1 | None | ERR4821655 | Sensitive | lineage4 | None | ERR4821686 | Sensitive | lineage4.1.2.1 | None | SRR6046141 | Other | lineage4.9 | None | SRR6045832 | HR-TB | lineage4.9 | None | SRR6044780 | Other | lineage4.9 | None | SRR6045892 | Sensitive | None | SRR6044819 | Sensitive | lineage4.9 | None | SRR6044790 | HR-TB | None | SRR6044875 | HR-TB | lineage4.9 | None | SRR6044838 | Other | lineage4.9 | None | SRR6044855 | Other | lineage4.9 | None | SRR6044876 | Sensitive | lineage4 | None | SRR6045002 | MDR-TB | lineage4.9 | None | SRR6045010 | Other | lineage4 | None | SRR6046210 | Other | lineage4 | None | SRR6045191 | Sensitive | lineage4.9 | None | SRR6046066 | HR-TB | None | SRR6045371 | Sensitive | lineage4.2.1 | None | SRR6045399 | Other | None | SRR6046245 | Other | lineage4.9 | None | SRR6046362 | HR-TB | None | SRR6046305 | Other | lineage4.9 | None | SRR6046460 | HR-TB | None | ERR2851356 | Sensitive | lineage4.9 | None | SRR6046521 | Other | lineage4.4.1.1 | None | SRR6046540 | HR-TB | None | SRR6046611 | HR-TB | lineage4.9 | None | SRR6046644 | HR-TB | None | SRR6046897 | Sensitive | lineage4 | None | SRR6046802 | Other | lineage4 | None | ERR11466146 | Other | lineage4.3.4.2.1 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR323037 | HR-TB | lineage4 | None | SRR6789626 | Other | None | ERR4872094 | MDR-TB | lineage5.2 | None | ERR4831638 | Sensitive | None | ERR4831739 | MDR-TB | lineage2.2.1 | None | SRR6785227 | Other | lineage2.2.1 | None | SRR7496509 | Other | None | ERR502532 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | ERR502943 | HR-TB | None | SRR8217918 | HR-TB | None | SRR7496471 | Sensitive | None | SRR7496517 | Other | None | SRR9971114 | Other | lineage2.2.1 | None | SRR7496523 | Other | lineage4.7 | None | ERR323045 | HR-TB | None | ERR323043 | HR-TB | None | ERR323107 | Other | lineage4 | None | ERR323056 | HR-TB | lineage4.4.1.2 | None | ERR11488822 | Pre-XDR-TB | lineage4.1.2.1;lineage2.2.1 | None | ERR11466499 | Other | lineage4.3.4.1 | None | ERR11465232 | Sensitive | lineage4.1.2.1 | None | ERR1023525 | HR-TB | lineage4 | None | ERR067699 | HR-TB | lineage4 | None | ERR11465235 | Sensitive | lineage4.3.4.2.1 | None | ERR1035157 | Other | lineage4.9 | None | ERR11465024 | Other | lineage4.1.1.3 | None | ERR1063862 | HR-TB | None | ERR133825 | Sensitive | lineage4 | None | ERR1063858 | HR-TB | None | ERR1063859 | HR-TB | None | ERR1063883 | Sensitive | lineage4 | None | ERR108471 | HR-TB | lineage4 | None | ERR11049020 | Other | lineage4.8 | None | ERR3283014 | HR-TB | None | ERR323115 | Sensitive | lineage4 | None | ERR3283021 | HR-TB | None | ERR3283025 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3283028 | Other | None | ERR3283041 | Other | lineage4.9 | None | ERR3283031 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3283047 | HR-TB | None | ERR3283057 | HR-TB | lineage4 | None | ERR3445502 | HR-TB | lineage4 | None | ERR349264 | Sensitive | lineage4 | None | ERR349265 | Sensitive | lineage4 | None | ERR349266 | Sensitive | lineage4.9 | None | ERR349299 | Sensitive | lineage4 | None | ERR349300 | Sensitive | lineage4.9 | None | ERR349330 | Sensitive | lineage4 | None | ERR363437 | Sensitive | lineage4 | None | ERR363499 | Sensitive | lineage4 | None | ERR363498 | Sensitive | lineage4 | None | ERR363502 | Sensitive | lineage4 | None | ERR3445501 | HR-TB | None | ERR3445503 | HR-TB | None | ERR349298 | Sensitive | lineage4 | None | ERR349296 | Sensitive | lineage4 | None | ERR363421 | Sensitive | lineage4 | None | ERR363426 | Sensitive | lineage4 | None | ERR363446 | Sensitive | lineage4 | None | ERR363445 | Sensitive | lineage4 | None | ERR363447 | Sensitive | lineage4 | None | ERR363449 | Sensitive | lineage4 | None | ERR363453 | Sensitive | lineage4 | None | ERR363456 | Sensitive | lineage4 | None | ERR363474 | Sensitive | lineage4 | None | ERR363479 | Sensitive | lineage4 | None | ERR363490 | Sensitive | lineage4 | None | ERR363500 | Sensitive | lineage4 | None | ERR363506 | Sensitive | lineage4 | None | ERR363509 | Sensitive | lineage4 | None | ERR369158 | Sensitive | lineage4 | None | ERR369159 | Sensitive | lineage4 | None | ERR373946 | Sensitive | lineage4 | None | ERR369160 | Sensitive | lineage4.9 | None | ERR369162 | Sensitive | lineage4 | None | ERR373945 | HR-TB | lineage4 | None | ERR369163 | Sensitive | lineage4 | None | ERR3797047 | HR-TB | lineage4 | None | ERR373947 | Sensitive | lineage4 | None | ERR3797064 | Sensitive | None | ERR3797048 | HR-TB | None | ERR3797058 | Other | lineage4.9 | None | ERR3797069 | Other | None | ERR3797063 | HR-TB | None | ERR3797079 | Sensitive | lineage4 | None | ERR3797065 | MDR-TB | lineage4 | None | ERR3797087 | Sensitive | lineage4 | None | ERR3797086 | Other | lineage4.9 | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR400320 | Sensitive | lineage4 | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR400345 | Other | lineage4 | None | ERR400326 | Sensitive | lineage4 | None | ERR400336 | Sensitive | lineage4 | None | ERR405209 | Sensitive | lineage4 | None | ERR4178226 | Sensitive | lineage4 | None | ERR405219 | HR-TB | lineage4;lineage3.1 | None | ERR4797313 | HR-TB | None | ERR4407463 | HR-TB | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4769474 | HR-TB | lineage4 | None | ERR4796929 | Sensitive | lineage4 | None | ERR4797201 | Other | lineage1.2.2.2 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4797350 | Sensitive | lineage4.9 | None | ERR4798431 | HR-TB | None | ERR6865502 | Sensitive | lineage4 | None | ERR4798823 | HR-TB | lineage4 | None | ERR4799478 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799547 | Sensitive | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4810624 | HR-TB | lineage2.2 | None | ERR4811022 | HR-TB | None | ERR4811031 | Sensitive | lineage4.5 | None | ERR4811105 | HR-TB | None | ERR4811142 | MDR-TB | None | ERR5336148 | Other | None | ERR4810741 | HR-TB | None | ERR4811030 | Sensitive | None | ERR4812155 | Sensitive | None | ERR6358979 | Other | None | ERR6358991 | HR-TB | None | ERR6359045 | HR-TB | None | ERR245758 | Other | lineage4.9.1 | None | ERR6866547 | Sensitive | lineage4 | None | ERR6866410 | Sensitive | None | ERR702404 | HR-TB | None | ERR702406 | HR-TB | None | ERR736817 | HR-TB | lineage4.3.4 | None | ERR736831 | HR-TB | lineage4.9 | None | ERR736837 | Other | lineage4.9 | None | ERR736867 | HR-TB | None | ERR736839 | Other | None | ERR736874 | HR-TB | None | ERR736875 | HR-TB | lineage4 | None | ERR8479578 | Sensitive | lineage1.1.3.1 | None | ERR7801175 | RR-TB | lineage4.6.5 | None | ERR7801176 | RR-TB | lineage4.6.5 | None | ERR9786604 | Other | None | ERR9117805 | Other | lineage4.3.2 | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9119669 | HR-TB | None | ERR9786569 | Other | lineage4.8 | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786421 | Other | lineage4.1.2.1 | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786617 | Other | lineage4.1.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | ERR9786671 | Other | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9787165 | Other | lineage6 | None | ERR9787197 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | SRR1049677 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049676 | MDR-TB | lineage4.8;lineage4.3.3 | None | SRR1049581 | MDR-TB | lineage4.6.1.2 | None | SRR10808805 | Sensitive | None | SRR10808399 | Sensitive | lineage4 | None | SRR10809074 | Sensitive | lineage4 | None |
---|