SRR7645861
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7755731
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10380068
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10380178
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6052032
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR7755702
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14781983
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802017
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23310989
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755686
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7755763
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169159
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662268
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4800278
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR11662545
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR28351636
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798081
|
MDR-TB
|
lineage3
|
in
|
SRR14807601
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6052040
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR14782461
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1172136
|
MDR-TB
|
lineage3.1.2
|
None
|
ERR7911082
|
MDR-TB
|
lineage2.2.1
|
md
|
SAMN02599048
|
MDR-TB
|
lineage3.1.2
|
in
|
ERR8774131
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR5866438
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393895
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR28498567
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762236
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762464
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28498681
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872271
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR1353083
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153853
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802241
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7755738
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR7645946
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782606
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801525
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351251
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5709911
|
Pre-XDR-TB
|
lineage2.2.1.1
|
th
|
ERR13285908
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13276137
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10380222
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801496
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266559
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7645889
|
Pre-XDR-TB
|
lineage2.2.1;lineage4
|
None
|
SAMN02584596
|
Pre-XDR-TB
|
lineage2.2.1
|
md
|
SRR5153834
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798606
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28498546
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28498374
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498724
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755718
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044415
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662426
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR13243563
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10380033
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7646064
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4829827
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
ERR4423541
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR7646051
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2
|
None
|
SRR7755675
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380123
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510707
|
MDR-TB
|
lineage2.2.1
|
it
|
SRR10380020
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4596920
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR23310956
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25534479
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911036
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR7755696
|
MDR-TB
|
lineage2.2.1;lineage4.2.1.1
|
None
|
SRR7755673
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3743399
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801916
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798615
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872262
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798610
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4872328
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2307470
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801329
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645929
|
RR-TB
|
lineage2.2.1
|
None
|
ERR11798611
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662402
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR11662440
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR7645956
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7645887
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755647
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662212
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR14782323
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10380096
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798669
|
Pre-XDR-TB
|
lineage2.2;lineage4.2.1
|
None
|
ERR10762354
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802196
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1353082
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043975
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR23310847
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3743404
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798612
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351219
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1168994
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782421
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801996
|
HR-TB
|
lineage2.2.1
|
None
|
ERR4828817
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6807685
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798616
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2307418
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11044004
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR13285798
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14781955
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310968
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872304
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872351
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801341
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7645874
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR14782547
|
HR-TB
|
lineage2.2.1
|
None
|
SRR7755663
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR11662401
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR10762296
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827667
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801747
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911032
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR5153923
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351199
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755705
|
MDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR16088414
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798609
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782510
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8774129
|
MDR-TB
|
lineage4.3.2.1
|
None
|
ERR11798614
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1180464
|
RR-TB
|
lineage3.1.2
|
None
|
ERR752149
|
MDR-TB
|
lineage2.2.1.1
|
th
|
SRR14801915
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797163
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28351200
|
HR-TB
|
lineage2.2.1
|
None
|
ERR11798608
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782081
|
MDR-TB
|
lineage2.2.1;lineage4.2.1.1
|
None
|
SRR7755704
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
SRR14801597
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10379895
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10379882
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911261
|
MDR-TB
|
lineage2.2.1
|
md
|
SAMN02584644
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR7755708
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR24256362
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
DRR454971
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1166157
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285777
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR23311077
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1166303
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02584597
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR14782196
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1166227
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10379974
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802066
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169539
|
MDR-TB
|
lineage3.1.2
|
None
|
ERR10762385
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801354
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911093
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR11798607
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285723
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782285
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351300
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29358138
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7645840
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498678
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762472
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782174
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782475
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7645831
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284860
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762247
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR10762482
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1180256
|
RR-TB
|
lineage3.1.2
|
None
|
SRR14782562
|
HR-TB
|
lineage2.2.1
|
None
|
ERR5866439
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285764
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782568
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4820802
|
MDR-TB
|
lineage3
|
gb
|
SRR23311038
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169035
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798613
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801912
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351637
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7910966
|
MDR-TB
|
lineage2.2.1
|
md
|
SRR14802140
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351624
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14782083
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7755689
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.2.1
|
None
|
ERR7910920
|
MDR-TB
|
lineage2.2.1
|
md
|
ERR4423542
|
MDR-TB
|
lineage4.3.2.1
|
None
|
SRR7755744
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|