lineage | Count |
---|---|
lineage2.2.1 | 38 |
lineage4 | 2 |
lineage4.1.1.3 | 1 |
lineage2.2.2 | 6 |
lineage4.3.3 | 4 |
lineage1.1.2 | 4 |
lineage4.1.1 | 1 |
lineage4.5 | 1 |
lineage4.8 | 3 |
lineage3 | 2 |
lineage4.9 | 2 |
lineage4.6 | 2 |
lineage4.1.2.1.1 | 2 |
lineage3.1.2.1 | 1 |
lineage4.1.2.1 | 2 |
lineage4.6.1.2 | 2 |
lineage1.2.2.2 | 1 |
lineage4.1.1.1 | 1 |
lineage2.2 | 1 |
lineage4.4.1.1 | 1 |
lineage4.3.1 | 1 |
lineage4.3.2 | 2 |
lineage1.2.1.2.1 | 1 |
lineage3.1.2 | 1 |
lineage3.1.1 | 1 |
spoligotype | Count |
---|---|
None | 83 |
ID | Drug resistance | Lineage | Country iso2 | SRR28046227 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156253 | MDR-TB | lineage2.2.1 | None | SRR29274115 | Pre-XDR-TB | lineage4 | None | ERR10112866 | Pre-XDR-TB | lineage2.2.1 | None | ERR2515277 | RR-TB | lineage4.1.1.3 | za | ERR9807013 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911599 | Pre-XDR-TB | lineage2.2.1 | za | ERR5918018 | XDR-TB | lineage2.2.1 | za | SRR1723425 | MDR-TB | lineage2.2.2 | cn | ERR4423549 | MDR-TB | lineage2.2.1 | None | ERR2516407 | MDR-TB | lineage4.3.3 | nl | SRR29772513 | MDR-TB | lineage1.1.2 | None | SRR9971182 | MDR-TB | lineage4.3.3 | None | ERR8665958 | MDR-TB | lineage2.2.1 | None | ERR4829077 | RR-TB | lineage4.1.1 | it | SRR21747009 | MDR-TB | lineage2.2.1 | None | SRR6824472 | MDR-TB | lineage2.2.2 | cn | SRR10306024 | MDR-TB | lineage2.2.2 | None | SRR30180481 | MDR-TB | lineage4.5 | None | ERR11068959 | MDR-TB | lineage4.8 | None | ERR8665959 | MDR-TB | lineage2.2.1 | None | SRR1181090 | Pre-XDR-TB | lineage2.2.1 | None | SRR1181121 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424729 | MDR-TB | lineage3 | None | ERR4797562 | Pre-XDR-TB | lineage2.2.1 | in | ERR1035276 | MDR-TB | lineage4.3.3 | br | SRR17406764 | Pre-XDR-TB | lineage2.2.1 | None | ERR5987361 | Pre-XDR-TB | lineage2.2.1 | None | ERR2707068 | RR-TB | lineage4.9 | cd | SRR12420701 | MDR-TB | lineage2.2.1 | None | ERR6052052 | MDR-TB | lineage2.2.1 | None | SRR29231710 | RR-TB | lineage4.9 | None | ERR9119479 | MDR-TB | lineage4.6 | None | ERR7737626 | MDR-TB | lineage2.2.1 | None | ERR4553898 | MDR-TB | lineage2.2.2 | None | SRR15014679 | MDR-TB | lineage1.1.2 | None | ERR5918016 | XDR-TB | lineage2.2.1 | za | ERR9806865 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035267 | MDR-TB | lineage4.3.3 | br | ERR760829 | Pre-XDR-TB | lineage4.1.2.1.1 | ar | SRR21576625 | MDR-TB | lineage2.2.1 | None | ERR4798535 | MDR-TB | lineage3.1.2.1 | in | ERR2307639 | MDR-TB | lineage2.2.1 | None | SRR1180972 | MDR-TB | lineage2.2.1 | None | SRR13870401 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR21576709 | MDR-TB | lineage2.2.1 | None | ERR4831566 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869200 | Pre-XDR-TB | lineage2.2.1 | None | ERR987748 | MDR-TB | lineage4.6.1.2 | None | ERR11252699 | RR-TB | lineage1.2.2.2 | None | ERR2510621 | MDR-TB | lineage3 | pk | SRR29017045 | Pre-XDR-TB | lineage2.2.2 | None | ERR9993237 | XDR-TB | lineage2.2.1 | None | SRR29093435 | Pre-XDR-TB | lineage2.2.1 | None | SRR10500311 | Pre-XDR-TB | lineage1.1.2 | None | SRR4423148 | Pre-XDR-TB | lineage2.2.2 | None | ERR11044028 | MDR-TB | lineage4.1.1.1 | None | ERR1199114 | MDR-TB | lineage4.6.1.2 | ug | SRR21576698 | MDR-TB | lineage2.2.1 | None | SRR10040258 | MDR-TB | lineage2.2.1 | None | ERR4553907 | MDR-TB | lineage2.2 | None | ERR4809173 | MDR-TB | lineage4.4.1.1 | za | ERR6052095 | MDR-TB | lineage2.2.1 | None | SRR16156256 | MDR-TB | lineage2.2.1 | None | SRR7781502 | MDR-TB | lineage4.3.1 | None | ERR4829830 | Pre-XDR-TB | lineage4.8 | it | SRR30180281 | MDR-TB | lineage2.2.1 | None | ERR760826 | MDR-TB | lineage4.1.2.1.1 | ar | ERR4423550 | MDR-TB | lineage2.2.1 | None | SRR14801396 | MDR-TB | lineage4.8 | None | SRR10305655 | MDR-TB | lineage2.2.1 | None | ERR4812846 | MDR-TB | lineage4.3.2 | None | SRR13870375 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR6397957 | MDR-TB | lineage1.2.1.2.1 | ca | SRR7592342 | Pre-XDR-TB | lineage4 | None | ERR4872073 | MDR-TB | lineage4.6 | None | SRR1181120 | MDR-TB | lineage2.2.1 | None | ERR2516743 | MDR-TB | lineage3.1.2 | gb | ERR2510553 | Pre-XDR-TB | lineage1.1.2 | pk | ERR6052116 | MDR-TB | lineage2.2.1 | None | SRR20969480 | MDR-TB | lineage2.2.1 | None | ERR4812818 | MDR-TB | lineage4.3.2 | None | ERR3077985 | MDR-TB | lineage3.1.1 | None |
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