ERR4827886
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830592
|
MDR-TB
|
lineage2.2.1
|
tm
|
SRR10040452
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR12117950
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29051303
|
MDR-TB
|
lineage4.3.3
|
None
|
DRR130163
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29356736
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510547
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR3077933
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR12420737
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796382
|
Pre-XDR-TB
|
lineage4.3.3
|
in
|
SRR6832502
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11773828
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7516322
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551035
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25389515
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14802189
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3287646
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
SRR28351169
|
Pre-XDR-TB
|
lineage3.1.2
|
None
|
SRR1162765
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9806628
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR6832244
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16088168
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR550814
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3273198
|
MDR-TB
|
lineage2.1
|
None
|
ERR2815358
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR1165377
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864473
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864422
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25207375
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR9030491
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR1165685
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR13232555
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR779898
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR4813464
|
MDR-TB
|
lineage4.3.3;lineage4.3.4.2
|
pe
|
ERR2124107
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR553233
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7517832
|
MDR-TB
|
lineage4
|
pe
|
ERR5866508
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR998648
|
Pre-XDR-TB
|
lineage6.3.1
|
None
|
ERR2653083
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR5864429
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2517094
|
MDR-TB
|
lineage4.6.2.2
|
gb
|
ERR6197039
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4812955
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
SAMN02414975
|
Pre-XDR-TB
|
lineage2.2.1
|
se
|
ERR2307540
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5153242
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6397949
|
MDR-TB
|
lineage1.2.1.2
|
ca
|
SRR24709892
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28888067
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4830647
|
MDR-TB
|
lineage2.2.1
|
tm
|
SRR6511601
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR4812848
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR5865994
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR13243566
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2815359
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR1163172
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR2653113
|
MDR-TB
|
lineage4.8
|
None
|
ERR4815372
|
Pre-XDR-TB
|
lineage3
|
gb
|
ERR2307606
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR775330
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR13290531
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6824406
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR751400
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR6336789
|
MDR-TB
|
lineage1.2.1.2.1
|
None
|
SRR25207048
|
MDR-TB
|
lineage4.5
|
None
|
ERR4830732
|
MDR-TB
|
lineage4.3.1
|
dz
|
ERR2307435
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4812865
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR2516336
|
MDR-TB
|
lineage2.2.1
|
be
|
SRR12420328
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22424927
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR7911347
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29539855
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550985
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8327263
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28888064
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR133884
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR4972534
|
XDR-TB
|
lineage4.3.3;lineage4.4.1.1
|
None
|
ERR551554
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8357446
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800390
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR3287543
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR3287857
|
Pre-XDR-TB
|
lineage4.1.1.3;lineage4.3.4.2
|
None
|
ERR1034715
|
MDR-TB
|
lineage4.1.2.1
|
pe
|
ERR13284584
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796412
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911171
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR7975644
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR760744
|
MDR-TB
|
lineage4.1.2.1.1
|
ar
|
ERR5866287
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR18714963
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
DRR130183
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SAMN02414942
|
MDR-TB
|
lineage2.2.1
|
se
|
SRR6257043
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3105773
|
RR-TB
|
lineage3
|
None
|
SRR13232483
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5152945
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1169046
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR4830722
|
Pre-XDR-TB
|
lineage4.3.1
|
dz
|
ERR7911167
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR15217984
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR10762415
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29230911
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29124257
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR2307598
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9029866
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4828053
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02403607
|
MDR-TB
|
lineage2.2.1.1
|
za
|
SRR10430360
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866289
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR775371
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR6358839
|
MDR-TB
|
lineage4.6.1.1
|
None
|
ERR9125510
|
MDR-TB
|
lineage1.2.1.2
|
None
|
ERR9119466
|
MDR-TB
|
lineage4.1.4
|
None
|
SRR28239436
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28394235
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR28434979
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR22461677
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR11773820
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22461593
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
SRR9224969
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28888078
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11773817
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29050898
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR5897115
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR13290620
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539539
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539640
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539828
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539846
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29681257
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12117952
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR30182833
|
MDR-TB
|
lineage1.2.1.2
|
None
|
ERR4829998
|
MDR-TB
|
lineage4.6.2.2
|
None
|
ERR4872098
|
MDR-TB
|
lineage4.1.4
|
None
|
SRR28888075
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR2861376
|
MDR-TB
|
lineage4.3.3;lineage4.3.4.2
|
None
|
ERR4812978
|
Pre-XDR-TB
|
lineage4.1.2.1
|
pe
|
ERR4813809
|
MDR-TB
|
lineage4.1.2.1
|
br
|
ERR7737885
|
MDR-TB
|
lineage3
|
None
|
ERR7910887
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
SRR1166707
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510708
|
MDR-TB
|
lineage5.1.4
|
it
|
ERR11043561
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813408
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR4872154
|
Pre-XDR-TB
|
lineage4.6.2.2
|
None
|
SRR29050880
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR13288968
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR13284281
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6879017
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4813064
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR4813668
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29539155
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28888063
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5866147
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13284499
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28394029
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28351250
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2517055
|
MDR-TB
|
lineage3.1.3
|
gb
|
ERR4813327
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR8847016
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828115
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830632
|
MDR-TB
|
lineage2.2.1
|
tm
|
ERR12118054
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR7975642
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257069
|
HR-TB
|
lineage2.2.1
|
None
|
SRR18715339
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4827566
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831986
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR13180388
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4810944
|
MDR-TB
|
lineage4.4.2
|
cn
|
ERR5864419
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864431
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864470
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR779903
|
MDR-TB
|
lineage4.1.1;lineage4.3.4.2
|
pe
|
ERR4812482
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR4811910
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR987759
|
RR-TB
|
lineage4.6.1.2
|
None
|
SRR16915749
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4407496
|
MDR-TB
|
lineage2.2.1
|
None
|
DRR130056
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR5864435
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827425
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828976
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18715340
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3287442
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR9119557
|
MDR-TB
|
lineage4.1.4
|
None
|
ERR5897106
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR5866509
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813643
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR10762372
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3287655
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR7911348
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR998649
|
Pre-XDR-TB
|
lineage6.3.1
|
None
|
SRR998651
|
Pre-XDR-TB
|
lineage6.3.1
|
None
|
SRR1002689
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257029
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR13292580
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29050642
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR15315823
|
MDR-TB
|
lineage4.4.2
|
None
|
ERR6197041
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29539371
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4872246
|
MDR-TB
|
lineage4.1.4
|
None
|
ERR5865691
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3287677
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
SRR8364677
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8433192
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832837
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR751494
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR7910983
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
SRR26937145
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12117929
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR9224919
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR18714920
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR9119556
|
Pre-XDR-TB
|
lineage4.6.2.2
|
None
|
ERR4813655
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR1166927
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830155
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799831
|
Pre-XDR-TB
|
lineage3.1.2
|
in
|
SRR8368702
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813924
|
MDR-TB
|
lineage4.1.2.1
|
br
|
SRR24256362
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2307525
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26937089
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8351971
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800373
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR751592
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR11044775
|
MDR-TB
|
lineage3
|
None
|
SRR1166919
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510174
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR13284457
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082729
|
MDR-TB
|
lineage1.2.1.2
|
None
|
SRR25207180
|
XDR-TB
|
lineage2.2.2
|
None
|
ERR3287439
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR25827355
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4
|
None
|
ERR13290532
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798551
|
Pre-XDR-TB
|
lineage4.3.3
|
in
|
ERR5979458
|
MDR-TB
|
lineage3
|
None
|
ERR5866065
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866145
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR1199134
|
RR-TB
|
lineage4.6.1.2
|
ug
|
ERR7911315
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR4024993
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR6197021
|
MDR-TB
|
lineage4.3.4.2;lineage4.7
|
None
|
SRR16915764
|
MDR-TB
|
lineage2.2.1;lineage4.3.4.2
|
None
|
SRR9225000
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4024721
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4830627
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR16370471
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4972485
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR2307441
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9119504
|
MDR-TB
|
lineage4.1.4
|
None
|
SRR18714774
|
MDR-TB
|
lineage1.2.1.2
|
None
|
SRR9224990
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5866064
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21576541
|
RR-TB
|
lineage2.2.1
|
None
|
ERR13284395
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290619
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5065261
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR8360458
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4827918
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864432
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864427
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3287630
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR7829596
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR1002694
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1165550
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8442761
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172073
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR2517068
|
MDR-TB
|
lineage3
|
gb
|
SRR16370492
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR16058635
|
MDR-TB
|
lineage1.2.1.2
|
None
|
SRR15316076
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865995
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6866936
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR28888065
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28393360
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SAMN02419670
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
by
|
SRR28393761
|
RR-TB
|
lineage4.3.2
|
None
|
SRR28240098
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7516392
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290714
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29051561
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR3335734
|
Pre-XDR-TB
|
lineage4
|
pk
|
SRR8651568
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR751394
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
SRR29538875
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539705
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29681372
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29681398
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29538915
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3639698
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21576669
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256363
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1162812
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1163374
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR1165572
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827827
|
Pre-XDR-TB
|
lineage2.2.1;lineage3
|
None
|
ERR2510628
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4820325
|
MDR-TB
|
lineage3
|
gb
|
SRR7517713
|
RR-TB
|
lineage3
|
None
|
ERR11068679
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11082648
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6832143
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864434
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12118000
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29772403
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
ERR10679992
|
MDR-TB
|
lineage6.1.3
|
None
|
SRR18548957
|
RR-TB
|
lineage4.4.2
|
None
|
SRR29772464
|
RR-TB
|
lineage1.2.2.2
|
None
|
DRR130155
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2815357
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR13284864
|
MDR-TB
|
lineage3
|
None
|
SRR24256245
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813098
|
Pre-XDR-TB
|
lineage4.3.4.2
|
None
|
ERR12117925
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR26399972
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10040399
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10808670
|
Pre-XDR-TB
|
lineage4.3.2
|
None
|
ERR9029927
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR5864421
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28435001
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29772522
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5979425
|
RR-TB
|
lineage3
|
None
|
ERR7975663
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02414984
|
Pre-XDR-TB
|
lineage2.2.1
|
se
|
ERR4813365
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR4797096
|
MDR-TB
|
lineage3.1.2
|
None
|
SRR15014720
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
ERR5866143
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR5341359
|
Pre-XDR-TB
|
lineage1.1.2
|
in
|
ERR7910869
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
SRR16088469
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284767
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24710032
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13290530
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2861375
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR5864424
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR998650
|
Pre-XDR-TB
|
lineage6.3.1
|
None
|
ERR4813725
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4813477
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR11082735
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR751393
|
MDR-TB
|
lineage4.1.2.1;lineage4.3.4.2
|
pe
|
ERR2815362
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SAMEA5569632
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29081636
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR10610278
|
MDR-TB
|
lineage4.1.1.3
|
None
|
ERR6866033
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR12117987
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR751474
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
SRR7657749
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR5153269
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3287668
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR4812895
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR4831987
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3639803
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4812915
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR5864425
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866288
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4812589
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR4798598
|
Pre-XDR-TB
|
lineage3.1.2
|
in
|
SAMN02414947
|
MDR-TB
|
lineage2.2.1
|
se
|
SRR16370669
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8426987
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6197043
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR2864276
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pt
|
SRR1165705
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR5864472
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864430
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2184557
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR21576712
|
MDR-TB
|
lineage1.2.1.2
|
None
|
ERR4813048
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pe
|
ERR3287669
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR2600591
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4831000
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR9119710
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1165543
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1167114
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16370214
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20632799
|
Pre-XDR-TB
|
lineage2.1
|
None
|
SRR12420647
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24783280
|
RR-TB
|
lineage4.6.2.2
|
None
|
ERR4813910
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4798861
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2677387
|
Pre-XDR-TB
|
lineage2.2.1
|
de
|
ERR779901
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pe
|
ERR12118020
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR1166878
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8352463
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2124100
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR6831746
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797150
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR6257107
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516754
|
MDR-TB
|
lineage3
|
gb
|
ERR2516771
|
MDR-TB
|
lineage1.2.1.2
|
gb
|
ERR551159
|
MDR-TB
|
lineage2.2.1
|
uz
|
SRR6458425
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26937015
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232544
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR1034707
|
MDR-TB
|
lineage4.1.2;lineage4.3.4.2
|
pe
|
ERR6197037
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR8651592
|
Pre-XDR-TB
|
lineage2.2.2
|
cn
|
ERR11081497
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR108450
|
MDR-TB
|
lineage2.2.1
|
ru
|
SRR8369849
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR229951
|
MDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
ERR4812859
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
SRR11972229
|
HR-TB
|
lineage2.2.1.1
|
None
|
ERR4827887
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR845939
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR4812178
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
SRR16088069
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
SRR29539631
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR29050744
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR4832000
|
MDR-TB
|
lineage2.2.1
|
vn
|
ERR3287358
|
Pre-XDR-TB
|
lineage4.3.4.2
|
pe
|
SRR29772519
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR4828971
|
Pre-XDR-TB
|
lineage3
|
None
|
ERR4972530
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR2815360
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SAMEA104362398
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR133916
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR4813696
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR10680108
|
MDR-TB
|
lineage6.2.3
|
None
|
SRR12420471
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR7516374
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR11775772
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866496
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4812090
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4812914
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4827875
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR11773788
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22461605
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR27069406
|
Pre-XDR-TB
|
lineage4.4.2
|
None
|
SRR10808954
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR27069431
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28706651
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11773819
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13289437
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28394209
|
MDR-TB
|
lineage4.3.4.1
|
None
|
SRR8379902
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28498392
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539274
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813722
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR29539509
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539700
|
MDR-TB
|
lineage4.1
|
None
|
ERR5864433
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866144
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13583484
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR5864420
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR27069413
|
RR-TB
|
lineage2.2.1
|
None
|
ERR4972500
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
ERR751580
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
SRR5341328
|
Pre-XDR-TB
|
lineage3
|
in
|
SRR5065303
|
MDR-TB
|
lineage2.2.1
|
vn
|
SRR8429777
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13273192
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11081843
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR22249548
|
Pre-XDR-TB
|
lineage3.1
|
None
|
SRR18715097
|
Pre-XDR-TB
|
lineage4.3.3
|
None
|
SRR16088470
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4822550
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7911339
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR7975654
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR7517730
|
MDR-TB
|
lineage3
|
None
|
ERR4828979
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29081660
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR13583376
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR28394027
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR7975631
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18714969
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10303283
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2815361
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR551963
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539842
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8354585
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510306
|
Pre-XDR-TB
|
lineage4.2.2.2
|
pk
|
ERR3335747
|
Pre-XDR-TB
|
lineage4
|
pk
|
ERR6865477
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR5864471
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864468
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR108494
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR5865692
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11662607
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284848
|
MDR-TB
|
lineage3
|
None
|
ERR11081078
|
MDR-TB
|
lineage3
|
None
|
SRR24828609
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6964571
|
MDR-TB
|
lineage4.2.2.2
|
None
|
ERR13267457
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SRR8366173
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11043752
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4828055
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1165477
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284791
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR2516854
|
MDR-TB
|
lineage2.2.1
|
gb
|
SRR22461591
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4813014
|
MDR-TB
|
lineage4.1.2.1;lineage4.3.4.2
|
None
|
ERR13276109
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4178199
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4812388
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR4796384
|
Pre-XDR-TB
|
lineage4.3.3
|
in
|
ERR779842
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR5866581
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4276871
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832536
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4811768
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR4831247
|
MDR-TB
|
lineage2.2.1
|
de
|
ERR5917704
|
MDR-TB
|
lineage2.2.1
|
by
|
ERR3287629
|
MDR-TB
|
lineage4.3.3
|
pe
|
SRR29056341
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11972353
|
MDR-TB
|
lineage1.2.2
|
None
|
SRR22250235
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8380010
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9029872
|
Pre-XDR-TB
|
lineage4.1.1.3;lineage4.3.4.2
|
None
|
SRR11662719
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3287467
|
Pre-XDR-TB
|
lineage4.3.3
|
pe
|
SRR24256102
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25206984
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR5864436
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1169208
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4813726
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR2815356
|
MDR-TB
|
lineage4.3.4.2
|
None
|
SAMEA5570051
|
Pre-XDR-TB
|
lineage4.1.1.3;lineage4.3.4.2
|
None
|
SRR6257096
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2307404
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6197692
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR552169
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864428
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1172159
|
MDR-TB
|
lineage2.2.1.1
|
None
|
SRR28888070
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR5865134
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20969747
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5987302
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6197023
|
MDR-TB
|
lineage4.3.4.2;lineage4.7
|
None
|
ERR11043560
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6832452
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256042
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR20970045
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798317
|
Pre-XDR-TB
|
lineage2.2.1.1
|
in
|
ERR4813297
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR2510660
|
Pre-XDR-TB
|
lineage3
|
it
|
SRR24256161
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8427096
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8354716
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872155
|
MDR-TB
|
lineage4.1.4
|
None
|
ERR4972575
|
XDR-TB
|
lineage4.3.3;lineage4.4.1.1
|
None
|
SRR1165602
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28239847
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866142
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR776474
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR6831814
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8380043
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18715337
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865135
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR12117994
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR6197694
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR5866146
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR13284266
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6257088
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3287480
|
MDR-TB
|
lineage4.3.4.2
|
pe
|
ERR11043753
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR3335724
|
Pre-XDR-TB
|
lineage3
|
pk
|
SRR1165490
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539369
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR551237
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827359
|
Pre-XDR-TB
|
lineage2.2.1;lineage3;lineage4.8
|
None
|
ERR8665886
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13253294
|
MDR-TB
|
lineage4.1.1.3
|
None
|
SRR12882160
|
RR-TB
|
lineage3
|
None
|
ERR4972492
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR8346382
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR6865613
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR4872056
|
MDR-TB
|
lineage4.1.4
|
None
|
SRR8348431
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8369839
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864423
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1049960
|
Pre-XDR-TB
|
lineage6.3.1
|
None
|
SRR6785479
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864469
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|