Rv0678 - c.144dupC

Drug resistance types
3 Sensitive 16 RR-TB 3 HR-TB 61 MDR-TB 217 Pre-XDR-TB 46 XDR-TB 6 Other
lineage Counts
lineage Count
lineage3 12
lineage4.1.2 2
lineage2.2.1 112
lineage4.3.3 28
lineage4.1.2.1 9
lineage4.3.4.1 3
lineage4. 3
lineage4.4.1.1 23
lineage1.2.2.2 18
lineage2.2.2 80
lineage4.3.2.1;lineage2.2.2 1
lineage4.8 5
lineage4.1.1.3 15
lineage4.3.2.1 4
lineage2.2 2
lineage4. 3
lineage4.8.1 2
lineage3.1.1 1
lineage2.2.1.1 9
lineage2.2.1;lineage1.2.2.2 1
lineage4.4.1.1;lineage4.3.3 1
lineage4.1.1 1
lineage1.1.3.2 1
lineage4.3.3;lineage2.2.1 1
lineage4 1
lineage9;lineage3.1 1
lineage4.4.1.2 1
lineage3;lineage2.2.1 2
lineage1.1.2 1
lineage4.2.2.2;lineage2.2.1 1
lineage4.7 3
lineage4.3.4.2 2
lineage3.1.2.1;lineage2.2.1 1
lineage4.2.2.2 1
lineage3;lineage2.2.1.1 1
spoligotype Counts
spoligotype Count
None 352
Geographic prevalence
Country level data for this variant is available for 48 isolates.
Statisctical support
Not enough data to calculate support.
ID Drug resistance Lineage Country iso2
ERR2510504 Pre-XDR-TB lineage3 pk
SRR7131091 Sensitive lineage4.1.2 None
ERR11488685 MDR-TB lineage2.2.1 None
SRR9971285 Pre-XDR-TB lineage4.3.3 None
ERR11488629 MDR-TB lineage2.2.1 None
ERR11488672 MDR-TB lineage2.2.1 None
SRR9738479 XDR-TB lineage4.1.2.1 None
ERR11488965 MDR-TB lineage2.2.1 None
SRR9028476 Other lineage3 None
ERR11488964 Pre-XDR-TB lineage4.3.4.1 None
SRR9028477 Other lineage3 None
SRR9971179 Pre-XDR-TB lineage4.3.3 None
SRR9971180 Pre-XDR-TB lineage4.3.3 None
ERR11488970 Pre-XDR-TB lineage4.3.4.1 None
SRR9028485 Other lineage3 None
ERR11488528 MDR-TB lineage4.3.3 None
SRR9028489 MDR-TB lineage3 None
ERR11488917 MDR-TB lineage4. None
ERR11488920 MDR-TB lineage2.2.1 None
ERR11488679 MDR-TB lineage4.1.2.1 None
ERR11488841 Pre-XDR-TB lineage4. None
ERR11488628 MDR-TB lineage2.2.1 None
ERR11488678 MDR-TB lineage4.3.3 None
ERR10748117 RR-TB lineage4.4.1.1 None
ERR10748106 XDR-TB lineage2.2.1 None
ERR10748148 Pre-XDR-TB lineage2.2.1 None
ERR10748262 MDR-TB lineage2.2.1 None
ERR10748167 MDR-TB lineage4.3.3 None
ERR10748207 Pre-XDR-TB lineage1.2.2.2 None
ERR10748198 Pre-XDR-TB lineage2.2.2 None
ERR10748245 MDR-TB lineage4.3.3 None
ERR10748249 MDR-TB lineage4.3.3 None
ERR10748267 Pre-XDR-TB lineage2.2.2 None
ERR11043615 XDR-TB lineage4.3.3 None
ERR10748550 Pre-XDR-TB lineage2.2.1 None
ERR10748330 MDR-TB lineage2.2.1 None
ERR10748352 Pre-XDR-TB lineage2.2.2 None
ERR10748466 Pre-XDR-TB lineage2.2.1 None
ERR10748498 Pre-XDR-TB lineage4.3.3 None
ERR10748499 Pre-XDR-TB lineage2.2.2 None
ERR11043975 Pre-XDR-TB lineage2.2.1 None
ERR11044658 XDR-TB lineage2.2.1 None
ERR11044004 Pre-XDR-TB lineage2.2.1 None
ERR11044250 XDR-TB lineage2.2.1 None
ERR5918016 Pre-XDR-TB lineage2.2.1 za
ERR4276886 XDR-TB lineage2.2.1 None
ERR4553946 Pre-XDR-TB lineage2.2.1 None
ERR11488994 MDR-TB lineage4. None
ERR5918012 Pre-XDR-TB lineage2.2.1 za
ERR4553930 Pre-XDR-TB lineage2.2.1 None
ERR8975687 Pre-XDR-TB lineage4.3.2.1;lineage2.2.2 None
ERR2515541 XDR-TB lineage2.2.2 za
ERR5917986 Pre-XDR-TB lineage2.2.2 za
ERR4797885 XDR-TB lineage2.2.1 None
ERR5918011 Pre-XDR-TB lineage2.2.2 za
ERR5918018 Pre-XDR-TB lineage2.2.1 za
ERR5918020 Pre-XDR-TB lineage2.2.1 za
ERR8665955 Pre-XDR-TB lineage2.2.1 None
ERR8975865 Pre-XDR-TB lineage2.2.2 None
ERR4799951 Pre-XDR-TB lineage2.2.1 None
ERR4808864 Pre-XDR-TB lineage2.2.2 za
ERR8975912 Pre-XDR-TB lineage2.2.1 None
ERR4831425 Other lineage3 None
ERR8975915 Pre-XDR-TB lineage4.8 None
ERR8975512 Pre-XDR-TB lineage4.4.1.1 None
ERR8976013 MDR-TB lineage4.3.3 None
ERR8975717 Pre-XDR-TB lineage4.1.1.3 None
ERR8975948 Pre-XDR-TB lineage4.4.1.1 None
ERR5918109 Pre-XDR-TB lineage2.2.1 za
ERR8975914 MDR-TB lineage4.3.3 None
ERR8975716 RR-TB lineage3 None
ERR8975005 Pre-XDR-TB lineage2.2.1 None
ERR5918116 Pre-XDR-TB lineage4.1.2.1 za
ERR8975816 MDR-TB lineage4.4.1.1 None
ERR5918120 Pre-XDR-TB lineage4.3.3 za
ERR8975847 Pre-XDR-TB lineage2.2.2 None
ERR8975981 RR-TB lineage2.2.1 None
ERR8976014 Pre-XDR-TB lineage2.2.2 None
ERR8975911 MDR-TB lineage2.2.1 None
ERR8975949 Pre-XDR-TB lineage2.2.2 None
ERR5917970 Pre-XDR-TB lineage4.3.3 za
ERR8975745 Pre-XDR-TB lineage2.2.2 None
ERR8975846 Pre-XDR-TB lineage2.2.2 None
ERR8975976 Pre-XDR-TB lineage2.2.2 None
ERR8976047 Other lineage2.2.1 None
ERR8975777 MDR-TB lineage4.1.1.3 None
ERR8975787 Pre-XDR-TB lineage4.4.1.1 None
ERR8975774 MDR-TB lineage2.2.1 None
ERR8975781 XDR-TB lineage4.1.1.3 None
ERR8975031 MDR-TB lineage2.2.1 None
ERR8975646 MDR-TB lineage4.1.1.3 None
ERR8975662 MDR-TB lineage2.2.1 None
ERR8975648 XDR-TB lineage2.2.1 None
ERR8975916 Pre-XDR-TB lineage2.2.2 None
ERR8975688 Pre-XDR-TB lineage4.4.1.1 None
ERR8975808 Pre-XDR-TB lineage2.2.1 None
ERR8975686 Pre-XDR-TB lineage4.3.2.1 None
SRR16087909 MDR-TB lineage2.2.1 None
ERR4830558 Pre-XDR-TB lineage4.3.3 None
ERR11067627 XDR-TB lineage2.2.1 None
ERR5917985 MDR-TB lineage2.2.1 None
ERR8975671 MDR-TB lineage2.2.1 None
ERR4830559 Pre-XDR-TB lineage4.3.3 None
ERR5918041 RR-TB lineage2.2.1 None
ERR9030318 MDR-TB lineage2.2 None
ERR9029361 Pre-XDR-TB lineage2.2.2 None
ERR9030331 Pre-XDR-TB lineage2.2.2 None
ERR9992624 Pre-XDR-TB lineage4. None
ERR9992642 MDR-TB lineage1.2.2.2 None
ERR9992631 Pre-XDR-TB lineage2.2.2 None
ERR9992638 Pre-XDR-TB lineage4.1.1.3 None
ERR9992627 Pre-XDR-TB lineage4.4.1.1 None
ERR9992632 Pre-XDR-TB lineage4.4.1.1 None
ERR9992650 MDR-TB lineage2.2.1 None
ERR9992645 Pre-XDR-TB lineage4.1.2.1 None
ERR9992640 Pre-XDR-TB lineage4.4.1.1 None
ERR9992665 Pre-XDR-TB lineage2.2.2 None
ERR9992655 Pre-XDR-TB lineage4.8.1 None
ERR9992668 Pre-XDR-TB lineage4.4.1.1 None
ERR9992654 Pre-XDR-TB lineage4.3.3 None
ERR9992663 Pre-XDR-TB lineage4.1.1.3 None
ERR9992681 Pre-XDR-TB lineage2.2.2 None
ERR9992671 XDR-TB lineage2.2.1 None
ERR9992664 MDR-TB lineage4.3.3 None
ERR9992670 Pre-XDR-TB lineage4.1.2.1 None
ERR9992694 Pre-XDR-TB lineage2.2.1 None
ERR9992688 Pre-XDR-TB lineage2.2.2 None
ERR9992684 Pre-XDR-TB lineage2.2.2 None
ERR9992706 Pre-XDR-TB lineage2.2.2 None
ERR9992699 Pre-XDR-TB lineage2.2.2 None
ERR9992703 Pre-XDR-TB lineage2.2.2 None
ERR9992731 Pre-XDR-TB lineage2.2.2 None
ERR9992715 Pre-XDR-TB lineage2.2.2 None
ERR9992708 Pre-XDR-TB lineage4.1.1.3 None
ERR9992721 XDR-TB lineage2.2.2 None
ERR9992735 Pre-XDR-TB lineage2.2.2 None
ERR9992738 Pre-XDR-TB lineage2.2.2 None
ERR9992729 Pre-XDR-TB lineage2.2.2 None
ERR9992736 Pre-XDR-TB lineage2.2.2 None
ERR9992755 RR-TB lineage4.8 None
ERR9992742 Pre-XDR-TB lineage2.2.2 None
ERR9992741 RR-TB lineage3.1.1 None
ERR9992764 Pre-XDR-TB lineage1.2.2.2 None
ERR9992779 Pre-XDR-TB lineage4.3.2.1 None
ERR9992780 Pre-XDR-TB lineage2.2.1.1 None
ERR9992752 Pre-XDR-TB lineage2.2.1 None
ERR9992803 Pre-XDR-TB lineage2.2.2 None
ERR9992795 Pre-XDR-TB lineage2.2.2 None
ERR9992788 RR-TB lineage2.2.1 None
ERR9992796 Pre-XDR-TB lineage2.2.1 None
ERR9992816 RR-TB lineage2.2.1 None
ERR9992814 RR-TB lineage2.2.1 None
ERR9992810 Pre-XDR-TB lineage2.2.2 None
ERR9992813 Pre-XDR-TB lineage2.2.2 None
ERR9992837 Pre-XDR-TB lineage4.4.1.1 None
ERR9992825 Pre-XDR-TB lineage1.2.2.2 None
ERR9992827 MDR-TB lineage4.3.3 None
ERR9992831 Pre-XDR-TB lineage2.2.1 None
ERR9992842 MDR-TB lineage2.2.1 None
ERR9992856 Pre-XDR-TB lineage2.2.2 None
ERR9992860 Pre-XDR-TB lineage1.2.2.2 None
ERR9992846 Pre-XDR-TB lineage2.2.2 None
ERR9992890 MDR-TB lineage4.4.1.1 None
ERR9992873 Pre-XDR-TB lineage1.2.2.2 None
ERR9992862 Pre-XDR-TB lineage2.2.2 None
ERR9992900 Pre-XDR-TB lineage2.2.2 None
ERR9992898 XDR-TB lineage2.2.1;lineage1.2.2.2 None
ERR9992889 Pre-XDR-TB lineage1.2.2.2 None
ERR9992919 Pre-XDR-TB lineage1.2.2.2 None
ERR9992897 XDR-TB lineage1.2.2.2 None
ERR9992901 Pre-XDR-TB lineage4.4.1.1;lineage4.3.3 None
ERR9992902 Pre-XDR-TB lineage4.4.1.1 None
ERR9992932 Pre-XDR-TB lineage1.2.2.2 None
ERR9992933 Pre-XDR-TB lineage2.2.1 None
ERR9992925 Pre-XDR-TB lineage1.2.2.2 None
ERR9992944 Pre-XDR-TB lineage2.2.2 None
ERR9992941 MDR-TB lineage4.3.3 None
ERR9992942 Pre-XDR-TB lineage2.2.2 None
ERR9992947 MDR-TB lineage4.3.2.1 None
ERR9992943 RR-TB lineage2.2.1.1 None
ERR9992949 Pre-XDR-TB lineage1.2.2.2 None
ERR9992955 MDR-TB lineage1.2.2.2 None
ERR9992961 Pre-XDR-TB lineage1.2.2.2 None
ERR9992959 Pre-XDR-TB lineage2.2.2 None
ERR9992960 Pre-XDR-TB lineage2.2.2 None
ERR9992975 Pre-XDR-TB lineage2.2.2 None
ERR9992965 Pre-XDR-TB lineage2.2.1 None
ERR9992963 Pre-XDR-TB lineage1.2.2.2 None
ERR9992956 Pre-XDR-TB lineage2.2.2 None
ERR9992958 Pre-XDR-TB lineage2.2.2 None
ERR9992966 Pre-XDR-TB lineage2.2.1 None
ERR9992970 Pre-XDR-TB lineage2.2.2 None
ERR9992977 Pre-XDR-TB lineage2.2.2 None
ERR9992984 MDR-TB lineage2.2.2 None
ERR9992986 Pre-XDR-TB lineage1.2.2.2 None
ERR9992980 Pre-XDR-TB lineage2.2.1 None
ERR9992983 Pre-XDR-TB lineage4.4.1.1 None
ERR9993002 MDR-TB lineage2.2.2 None
ERR9992993 HR-TB lineage2.2.1 None
ERR9992990 RR-TB lineage4.4.1.1 None
ERR9992992 Pre-XDR-TB lineage4. None
ERR9993004 XDR-TB lineage2.2.2 None
ERR9993003 Pre-XDR-TB lineage2.2.2 None
ERR9993005 XDR-TB lineage2.2.2 None
ERR9993008 Pre-XDR-TB lineage2.2.1 None
ERR9993013 RR-TB lineage4.4.1.1 None
ERR9993033 MDR-TB lineage2.2.2 None
ERR9993045 Pre-XDR-TB lineage2.2.2 None
ERR9993037 Pre-XDR-TB lineage4.1.1.3 None
ERR9993055 Pre-XDR-TB lineage2.2.1 None
ERR9993038 Pre-XDR-TB lineage2.2.2 None
ERR9993046 Pre-XDR-TB lineage2.2.2 None
ERR9993057 Pre-XDR-TB lineage1.2.2.2 None
ERR9993068 Pre-XDR-TB lineage2.2.1 None
ERR9993062 Pre-XDR-TB lineage1.2.2.2 None
ERR9993071 Pre-XDR-TB lineage4.4.1.1 None
ERR9993060 Pre-XDR-TB lineage2.2.1 None
ERR9993070 Pre-XDR-TB lineage2.2.2 None
ERR9993088 MDR-TB lineage4.1.1.3 None
ERR9993082 MDR-TB lineage2.2.2 None
ERR9993083 Pre-XDR-TB lineage4.1.1.3 None
ERR9993084 Pre-XDR-TB lineage4.3.2.1 None
ERR9993086 Pre-XDR-TB lineage4.1.2.1 None
ERR9993107 Pre-XDR-TB lineage4.4.1.1 None
ERR9993098 Pre-XDR-TB lineage2.2.2 None
ERR9993129 Pre-XDR-TB lineage4.4.1.1 None
ERR9993113 Pre-XDR-TB lineage4. None
ERR9993121 Pre-XDR-TB lineage4.1.1.3 None
ERR9993124 MDR-TB lineage4.8 None
ERR9993125 MDR-TB lineage4.8.1 None
ERR9993164 Pre-XDR-TB lineage2.2.2 None
ERR9993133 Pre-XDR-TB lineage4.3.3 None
ERR9993149 HR-TB lineage4.4.1.1 None
ERR9993171 Pre-XDR-TB lineage2.2.2 None
ERR9993134 MDR-TB lineage3 None
ERR9993139 Pre-XDR-TB lineage2.2.1 None
ERR9993150 MDR-TB lineage2.2.1 None
ERR9993152 RR-TB lineage2.2.1 None
ERR9993163 Pre-XDR-TB lineage2.2.1 None
ERR9993185 Pre-XDR-TB lineage2.2.1 None
ERR9993168 Pre-XDR-TB lineage4.1.1 None
ERR9993169 Pre-XDR-TB lineage2.2.2 None
ERR9993202 XDR-TB lineage2.2.1.1 None
ERR9993192 Pre-XDR-TB lineage2.2.2 None
ERR9993201 Pre-XDR-TB lineage2.2.2 None
ERR9993195 XDR-TB lineage2.2.2 None
ERR9993196 XDR-TB lineage2.2.2 None
ERR9993204 MDR-TB lineage2.2.2 None
ERR9993212 MDR-TB lineage2.2.1.1 None
ERR9993216 MDR-TB lineage4.1.1.3 None
ERR9993207 Sensitive lineage4.4.1.1 None
ERR9993228 Pre-XDR-TB lineage2.2.1 None
ERR9993230 Pre-XDR-TB lineage4.1.1.3 None
ERR9993241 Pre-XDR-TB lineage2.2.2 None
ERR9993233 RR-TB lineage4.4.1.1 None
ERR9993237 Pre-XDR-TB lineage2.2.1 None
ERR9993248 RR-TB lineage2.2.1 None
ERR9993238 Pre-XDR-TB lineage2.2.2 None
SRR12142336 MDR-TB lineage2.2.1 None
ERR9993252 Pre-XDR-TB lineage2.2.2 None
ERR9993262 Pre-XDR-TB lineage2.2.2 None
SRR10869039 Pre-XDR-TB lineage2.2.2 None
SRR12882236 MDR-TB lineage1.1.3.2 None
SRR13232613 Pre-XDR-TB lineage2.2.1 None
SRR16156282 Pre-XDR-TB lineage4.1.1.3 None
SRR13232759 XDR-TB lineage4.3.3;lineage2.2.1 None
SRR14782483 Pre-XDR-TB lineage2.2.1 None
SRR15244369 Pre-XDR-TB lineage4 None
SRR14782567 Pre-XDR-TB lineage2.2.1 None
SRR25827753 Pre-XDR-TB lineage3 None
SRR18002973 Pre-XDR-TB lineage2.2.1 None
SRR19276599 Pre-XDR-TB lineage4.3.3 None
SRR20632806 Pre-XDR-TB lineage2.2.1 None
SRR24709898 Pre-XDR-TB lineage2.2.1 None
SRR24710102 Pre-XDR-TB lineage2.2.1 None
SRR20632777 Pre-XDR-TB lineage2.2.1 None
SRR20632824 Pre-XDR-TB lineage2.2.1 None
SRR24710145 Pre-XDR-TB lineage2.2.1 None
SRR25207110 Pre-XDR-TB lineage2.2.1 None
SRR25827418 Pre-XDR-TB lineage9;lineage3.1 None
SRR25207181 Pre-XDR-TB lineage2.2.1.1 None
SRR25827462 Pre-XDR-TB lineage3 None
SRR25827438 XDR-TB lineage4.8 None
SRR25827542 XDR-TB lineage4.4.1.2 None
SRR25827513 Pre-XDR-TB lineage3;lineage2.2.1 None
SRR25827366 XDR-TB lineage2.2.1 None
SRR25827593 Pre-XDR-TB lineage1.1.2 None
SRR25827295 Pre-XDR-TB lineage4.8 None
SRR22175204 XDR-TB lineage2.2.1 None
SRR22175172 XDR-TB lineage2.2.1 None
SRR22175220 XDR-TB lineage2.2.1 None
SRR22175219 XDR-TB lineage4.2.2.2;lineage2.2.1 None
SRR22175200 XDR-TB lineage2.2.1.1 None
ERR11081152 XDR-TB lineage4.3.3 None
SRR22175221 Pre-XDR-TB lineage2.2.1 None
SRR22424779 Pre-XDR-TB lineage2.2.1 None
ERR11068151 MDR-TB lineage4.7 None
ERR11068326 MDR-TB lineage4.7 None
ERR11068441 MDR-TB lineage4.7 None
SRR22873604 XDR-TB lineage2.2.1 None
ERR10112853 Pre-XDR-TB lineage4.1.1.3 None
ERR10112902 Pre-XDR-TB lineage2.2.2 None
SRR8662667 Pre-XDR-TB lineage2.2.1 None
SRR22873603 Pre-XDR-TB lineage2.2.1 None
ERR11081809 XDR-TB lineage4.3.3 None
SRR23862102 MDR-TB lineage2.2.1 None
ERR10112903 Pre-XDR-TB lineage2.2.2 None
ERR10112905 MDR-TB lineage2.2 None
SRR25207055 Pre-XDR-TB lineage2.2.1.1 None
ERR1352355 Pre-XDR-TB lineage2.2.1 cn
ERR1352350 Pre-XDR-TB lineage2.2.1 cn
SRR26397809 XDR-TB lineage4.3.4.1 None
SRR26331591 Pre-XDR-TB lineage2.2.1 None
ERR1352358 Pre-XDR-TB lineage2.2.1 cn
ERR1352357 Pre-XDR-TB lineage2.2.1 cn
ERR2864225 Pre-XDR-TB lineage4.3.4.2 pt
ERR2677416 XDR-TB lineage4.3.3 de
SRR2024996 Pre-XDR-TB lineage2.2.1 cn
SRR5149238 Pre-XDR-TB lineage2.2.1 None
SRR7341698 MDR-TB lineage4.4.1.1 ro
ERR4797884 XDR-TB lineage3.1.2.1;lineage2.2.1 in
ERR3335725 RR-TB lineage3 pk
ERR3148169 Pre-XDR-TB lineage4.1.2.1 mx
ERR4831253 XDR-TB lineage2.2.1 de
ERR4797898 Pre-XDR-TB lineage2.2.1 in
ERR2516364 Pre-XDR-TB lineage2.2.1 be
ERR4822395 MDR-TB lineage2.2.1 kg
ERR4799259 Pre-XDR-TB lineage2.2.1 in
ERR4799040 Pre-XDR-TB lineage2.2.1 in
ERR2516597 Pre-XDR-TB lineage4.1.2.1 pe
ERR4799131 HR-TB lineage2.2.1 in
ERR4798248 MDR-TB lineage2.2.1.1 in
ERR4796328 XDR-TB lineage2.2.1 in
ERR4799888 XDR-TB lineage3;lineage2.2.1 in
ERR4798457 XDR-TB lineage2.2.1 in
ERR4796976 Pre-XDR-TB lineage4.2.2.2 in
SRR6152854 Other lineage4.1.2.1 None
ERR4810622 Pre-XDR-TB lineage2.2.1 cn
ERR4797311 Pre-XDR-TB lineage3;lineage2.2.1.1 in
ERR4797181 Pre-XDR-TB lineage3 in
ERR4798617 XDR-TB lineage2.2.1 in
SRR6511637 Pre-XDR-TB lineage4.3.4.2 None
ERR4822600 XDR-TB lineage4.3.3 de
ERR4822599 XDR-TB lineage4.3.3 de
ERR4822324 XDR-TB lineage4.3.3 de
ERR4797521 XDR-TB lineage2.2.1 in
ERR4799508 XDR-TB lineage2.2.1 in
ERR2510818 Sensitive lineage4.1.2 it
ERR4800476 XDR-TB lineage2.2.1.1 in
ERR4831591 Pre-XDR-TB lineage2.2.2 None
ERR4872271 Pre-XDR-TB lineage2.2.1 None
ERR4831593 Pre-XDR-TB lineage2.2.2 None