lineage | Count |
---|---|
76 | |
lineage4.1.1 | 1 |
lineage4.9 | 4 |
lineage3;lineage2.2.1 | 1 |
lineage2 | 2 |
lineage6.3;lineage2.2.1 | 1 |
lineage2.1 | 1 |
lineage4 | 12 |
La1.8.1 | 2 |
lineage2.2 | 3 |
lineage4.1.2.1 | 7 |
lineage2.2.1 | 6 |
lineage4.1.2 | 1 |
lineage5.2 | 2 |
lineage4.1.3 | 2 |
lineage3 | 2 |
lineage4.6.1.1 | 1 |
lineage1.1.2 | 2 |
lineage4.6.2.2 | 1 |
lineage6.3.1 | 1 |
lineage6 | 1 |
lineage4.5 | 1 |
spoligotype | Count |
---|---|
None | 130 |
ID | Drug resistance | Lineage | Country iso2 | SRR19303884 | HR-TB | None | SRR19304036 | HR-TB | None | ERR176793 | Other | lineage4.1.1 | None | SRR26159043 | Other | lineage4.9 | None | SRR25827497 | Pre-XDR-TB | lineage3;lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2 | None | SRR25827682 | Other | None | SRR28119811 | Other | lineage6.3;lineage2.2.1 | None | ERR4815604 | HR-TB | None | SRR3675465 | HR-TB | None | SRR5341422 | HR-TB | lineage2.1 | None | SRR3675246 | Sensitive | lineage4 | None | SRR3675311 | Other | None | ERR2027263 | Other | lineage4 | None | SRR3675221 | HR-TB | None | SRR3675236 | HR-TB | None | ERR212001 | HR-TB | None | ERR212123 | Other | None | SRR3675572 | Other | None | SRR3675571 | HR-TB | None | SRR3675574 | HR-TB | None | ERR4818021 | Other | La1.8.1 | None | SRR3742665 | HR-TB | None | ERR4816585 | Other | lineage2.2 | None | ERR4820854 | Other | lineage4.1.2.1 | None | ERR234659 | HR-TB | None | SRR5341373 | HR-TB | lineage4 | None | SRR5341456 | Other | None | SRR5341432 | HR-TB | lineage4 | None | SRR6046066 | HR-TB | None | ERR2514692 | Other | None | SRR5341313 | HR-TB | None | SRR5341302 | HR-TB | None | SRR5341315 | Sensitive | None | SRR6045503 | HR-TB | None | SRR6045526 | HR-TB | None | SRR6044790 | HR-TB | None | SRR6045327 | HR-TB | None | SRR6046299 | HR-TB | None | SRR6458423 | HR-TB | lineage2.2.1 | None | SRR6046540 | HR-TB | None | SRR9970980 | Other | lineage4.1.2 | None | ERR4872094 | MDR-TB | lineage5.2 | None | SRR6511621 | HR-TB | None | ERR502510 | Sensitive | lineage4 | None | ERR4831616 | MDR-TB | lineage2.2.1 | None | SRR6789626 | Other | None | ERR502532 | HR-TB | None | SRR7131023 | Other | lineage4.1.2.1 | None | SRR7496509 | Other | None | SRR7496517 | Other | None | SRR7535082 | Sensitive | lineage4 | None | ERR323085 | Sensitive | lineage4 | None | ERR323043 | HR-TB | None | ERR1035122 | Sensitive | None | ERR1023525 | HR-TB | lineage4 | None | ERR3797058 | Other | lineage4.9 | None | ERR3283021 | HR-TB | None | ERR3283027 | HR-TB | None | ERR3797015 | HR-TB | None | ERR3797047 | HR-TB | lineage4 | None | ERR3273109 | MDR-TB | lineage4 | None | ERR3283030 | HR-TB | lineage4.9 | None | ERR3283040 | HR-TB | None | ERR3283036 | HR-TB | None | ERR3445504 | HR-TB | None | ERR3445503 | HR-TB | None | ERR3804169 | HR-TB | lineage4.1.3 | None | ERR3797069 | Other | None | ERR3804155 | Other | lineage4.1.2.1 | None | ERR4024991 | Other | None | ERR4797184 | Sensitive | lineage4 | None | ERR4796254 | Sensitive | lineage4 | None | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4407463 | HR-TB | None | ERR4797264 | Sensitive | None | ERR4798099 | Other | None | ERR4797588 | MDR-TB | lineage3 | None | ERR4798493 | MDR-TB | lineage2.2.1 | None | ERR4800341 | Other | lineage3 | None | ERR4810741 | HR-TB | None | ERR6866639 | Other | None | ERR4811022 | HR-TB | None | ERR4811105 | HR-TB | None | ERR5336148 | Other | None | ERR4811142 | MDR-TB | None | ERR6358755 | Other | lineage4.6.1.1 | None | ERR6866022 | Other | None | ERR736874 | HR-TB | None | ERR702406 | HR-TB | None | ERR736867 | HR-TB | None | ERR9119500 | MDR-TB | lineage5.2 | None | ERR9117709 | HR-TB | None | ERR9117721 | HR-TB | lineage1.1.2 | None | ERR9786601 | Other | lineage4.1.2.1 | None | ERR9786604 | Other | None | ERR9786611 | HR-TB | lineage4.1.3 | None | ERR9786642 | Other | lineage4.1.2.1 | None | ERR9786645 | Other | lineage4.6.2.2 | None | SRR1172857 | MDR-TB | None | ERR9786671 | Other | None | ERR9787139 | Other | lineage6.3.1 | None | ERR9786682 | Other | lineage4.1.2.1 | None | ERR9786694 | Other | lineage4.1.2.1 | None | ERR9786843 | Other | None | ERR9787165 | Other | lineage6 | None | ERR9787197 | Other | None | SRR1169194 | Other | None | SRR1172951 | Other | None | SRR1173788 | Other | None | SRR1173400 | Other | None | SRR1173633 | HR-TB | lineage4.9 | None | SRR1173778 | Other | None | SRR1173629 | Other | None | SRR1180137 | Other | lineage2.2.1 | None | SRR1183049 | Other | lineage2.2 | None | SRR1181289 | Other | lineage2.2.1 | None | SRR1196546 | HR-TB | None | SRR1184294 | HR-TB | None | SRR1184312 | HR-TB | lineage2.2.1 | None | SRR1184388 | Other | None | SRR1184380 | HR-TB | None | SRR12142341 | HR-TB | None | SRR1196566 | HR-TB | None | SRR15368973 | Other | None | SRR12416824 | HR-TB | None | SRR25827687 | MDR-TB | lineage1.1.2 | None | SRR1791747 | Other | La1.8.1 | None | SRR18213713 | HR-TB | lineage4.5 | None | SRR18910194 | HR-TB | lineage2.2 | None |
---|