lineage | Count |
---|---|
lineage3 | 5 |
lineage2.2.1 | 28 |
lineage4.2.1 | 11 |
lineage2.2 | 1 |
lineage4.9 | 4 |
lineage4.8 | 18 |
lineage4.7 | 2 |
lineage4.1.1 | 1 |
lineage5 | 2 |
lineage4.1.2 | 1 |
lineage4.3.4.1 | 3 |
lineage4.1.1.3 | 1 |
lineage4.1.2.1 | 8 |
lineage1.1.1.1 | 1 |
lineage4.3.3 | 6 |
lineage4.5 | 1 |
lineage1.1.2 | 1 |
lineage4.2.2.2 | 1 |
2 | |
La1.2 | 4 |
La1.8.2 | 4 |
lineage2.2.1.1 | 2 |
lineage4.6 | 1 |
lineage4.3.2.1 | 2 |
lineage1.2.1.2.1 | 3 |
lineage4.2.1.1 | 2 |
lineage2.2.2 | 2 |
lineage9 | 1 |
lineage4.4.1.1 | 2 |
lineage4.6.2.2 | 1 |
spoligotype | Count |
---|---|
None | 121 |
ID | Drug resistance | Lineage | Country iso2 | ERR11049700 | Sensitive | lineage3 | None | ERR11049341 | Sensitive | lineage3 | None | ERR11067220 | Other | lineage2.2.1 | None | SRR23311010 | MDR-TB | lineage4.2.1 | None | SRR23310825 | MDR-TB | lineage2.2 | None | SRR23071812 | Sensitive | lineage4.9 | None | SRR23311013 | MDR-TB | lineage4.2.1 | None | ERR11049768 | Sensitive | lineage4.8 | None | SRR23311020 | MDR-TB | lineage4.2.1 | None | SRR23311017 | Sensitive | lineage4.7 | None | ERR10748302 | MDR-TB | lineage4.1.1 | None | SRR7592343 | MDR-TB | lineage4.7 | None | ERR10680177 | RR-TB | lineage5 | None | ERR10748287 | MDR-TB | lineage2.2.1 | None | ERR4872328 | Pre-XDR-TB | lineage2.2.1 | None | ERR11067425 | Sensitive | lineage4.1.2 | None | ERR10748300 | MDR-TB | lineage2.2.1 | None | ERR10969159 | Sensitive | lineage4.3.4.1 | None | ERR10748321 | MDR-TB | lineage4.1.1.3 | None | ERR10969155 | Sensitive | lineage4.1.2.1 | None | ERR11044492 | Sensitive | lineage1.1.1.1 | None | ERR11044484 | Sensitive | lineage4.3.3 | None | ERR11044655 | Sensitive | lineage4.5 | None | ERR11044548 | Sensitive | lineage4.8 | None | ERR4800222 | Sensitive | lineage1.1.2 | None | ERR11044702 | Sensitive | lineage4.1.2.1 | None | ERR4553407 | MDR-TB | lineage3 | None | ERR4553638 | MDR-TB | lineage2.2.1 | None | ERR11049559 | Other | lineage4.8 | None | ERR11044766 | Sensitive | lineage4.2.2.2 | None | ERR4553685 | MDR-TB | None | ERR4553797 | MDR-TB | None | ERR4553840 | Pre-XDR-TB | lineage3 | None | ERR6198390 | Other | La1.2 | None | ERR5979750 | Sensitive | lineage4.9 | None | ERR5979758 | Other | lineage4.9 | None | ERR6140659 | Other | La1.8.2 | None | ERR6140667 | Other | La1.8.2 | None | ERR6140805 | Other | La1.8.2 | None | ERR6198378 | Other | La1.2 | None | ERR5979797 | Sensitive | lineage4.9 | None | ERR6149418 | Other | La1.8.2 | None | ERR6201797 | Other | La1.2 | None | SRR10869311 | Sensitive | lineage2.2.1.1 | None | ERR7764375 | Sensitive | lineage4.8 | None | ERR11050189 | Sensitive | lineage4.8 | None | ERR6201864 | Other | La1.2 | None | ERR11049943 | Sensitive | lineage4.6 | None | SRR10315688 | RR-TB | lineage4.3.2.1 | None | SRR10869307 | Sensitive | lineage4.3.2.1 | None | SRR13232589 | Pre-XDR-TB | lineage2.2.1 | None | SRR12006694 | Sensitive | lineage1.2.1.2.1 | None | SRR12006708 | Sensitive | lineage1.2.1.2.1 | None | SRR14781926 | MDR-TB | lineage4.2.1 | None | SRR13232647 | MDR-TB | lineage2.2.1 | None | SRR14781864 | Other | lineage2.2.1 | None | SRR14781885 | Sensitive | lineage4.8 | None | SRR14781958 | Sensitive | lineage4.2.1.1 | None | SRR14781939 | Sensitive | lineage2.2.1 | None | SRR14781949 | Sensitive | lineage2.2.1 | None | SRR14782483 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782437 | Sensitive | lineage2.2.1 | None | SRR14782475 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782721 | MDR-TB | lineage4.2.1 | None | SRR14782481 | Sensitive | lineage4.3.4.1 | None | SRR14782623 | MDR-TB | lineage2.2.1 | None | SRR14782644 | Sensitive | lineage2.2.1 | None | SRR14782562 | MDR-TB | lineage2.2.1 | None | SRR14782672 | Sensitive | lineage4.3.3 | None | SRR14801368 | MDR-TB | lineage4.2.1 | None | SRR14801355 | Sensitive | lineage4.8 | None | SRR14801396 | MDR-TB | lineage4.8 | None | SRR14801377 | Sensitive | lineage4.8 | None | SRR14801375 | Sensitive | lineage2.2.1 | None | SRR14801387 | MDR-TB | lineage4.2.1 | None | SRR14801421 | MDR-TB | lineage2.2.1 | None | SRR14801767 | MDR-TB | lineage4.2.1 | None | SRR14801569 | Pre-XDR-TB | lineage4.2.1 | None | SRR14801972 | Sensitive | lineage4.2.1 | None | SRR14801818 | Other | lineage4.2.1.1 | None | SRR14802031 | Pre-XDR-TB | lineage2.2.1 | None | SRR14802112 | MDR-TB | lineage2.2.1 | None | SRR14802103 | Other | lineage4.3.3 | None | SRR14802040 | Other | lineage2.2.1 | None | SRR14802052 | Sensitive | lineage4.8 | None | ERR11050593 | Sensitive | lineage4.8 | None | SRR16156736 | Pre-XDR-TB | lineage2.2.2 | None | SRR14802245 | Sensitive | lineage4.8 | None | ERR11050611 | Sensitive | lineage9 | None | SRR16088301 | Sensitive | lineage4.3.3 | None | SRR16156192 | Pre-XDR-TB | lineage2.2.2 | None | SRR16088147 | Sensitive | lineage2.2.1 | None | ERR11050763 | HR-TB | lineage3 | None | ERR11050734 | Sensitive | lineage4.2.1 | None | SRR16157041 | MDR-TB | lineage4.4.1.1 | None | SRR19303836 | Sensitive | lineage5 | None | SRR18714957 | MDR-TB | lineage2.2.1 | None | SRR18714910 | MDR-TB | lineage2.2.1 | None | SRR18715074 | MDR-TB | lineage2.2.1 | None | SRR18715119 | MDR-TB | lineage2.2.1 | None | SRR18715313 | MDR-TB | lineage2.2.1 | None | ERR11050788 | Sensitive | lineage4.4.1.1 | None | SRR19303981 | Sensitive | lineage4.6.2.2 | None | SRR21240158 | Sensitive | lineage4.3.3 | None | ERR11050806 | Sensitive | lineage4.1.2.1 | None | ERR11050841 | Sensitive | lineage4.1.2.1 | None | SRR19304104 | Other | lineage4.8 | None | ERR11068762 | Other | lineage4.1.2.1 | None | SRR21240198 | Sensitive | lineage4.3.3 | None | ERR11050872 | Other | lineage4.1.2.1 | None | SRR21240229 | Other | lineage4.1.2.1 | None | SRR21595941 | Other | lineage4.8 | None | ERR11068938 | Sensitive | lineage4.8 | None | ERR11068931 | Sensitive | lineage1.2.1.2.1 | None | ERR10112845 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR23938678 | MDR-TB | lineage2.2.1 | None | ERR11083053 | Sensitive | lineage4.8 | None | ERR7363062 | Sensitive | lineage4.1.2.1 | None | ERR7363092 | Sensitive | lineage4.3.4.1 | None | ERR2229514 | Sensitive | lineage4.8 | None | ERR2229554 | Other | lineage4.8 | None |
---|