lineage | Count |
---|---|
lineage1.2.2.2 | 8 |
lineage4.1.1 | 5 |
lineage2.2.1 | 12 |
lineage4.1.2.1 | 8 |
lineage4.3.4.2 | 5 |
lineage3 | 18 |
lineage4;lineage1.2.2.1 | 1 |
3 | |
lineage1.1.3.1 | 7 |
lineage4.8 | 3 |
lineage1.1.3 | 1 |
lineage2.2.2 | 1 |
lineage4.6.1.2 | 1 |
lineage4.7 | 2 |
lineage4.9 | 4 |
lineage4.8.1 | 1 |
lineage4.3.3 | 4 |
lineage4.3.2.1 | 1 |
lineage2.2.1.1 | 1 |
lineage4.4.1.1 | 3 |
lineage4.1.1.3.1 | 3 |
lineage3.1.3 | 2 |
lineage4.3.4.2.1 | 2 |
lineage1.1.3.3 | 1 |
lineage1.1.2 | 2 |
lineage2.2.1.2 | 1 |
lineage4.7;lineage4.2.1.1 | 1 |
lineage4.2.2.2 | 1 |
lineage3.1.2.2 | 1 |
lineage4.8.2 | 1 |
lineage4.2.1.1 | 1 |
La1.6 | 1 |
lineage1.2.1.2.1 | 3 |
lineage4.4.2 | 2 |
lineage4.1.1.3 | 1 |
La1.7.1 | 2 |
spoligotype | Count |
---|---|
None | 114 |
ID | Drug resistance | Lineage | Country iso2 | SRR6650114 | Sensitive | lineage1.2.2.2 | None | SRR21675634 | Sensitive | lineage4.1.1 | None | SRR2101605 | Sensitive | lineage2.2.1 | None | SRR21031686 | MDR-TB | lineage2.2.1 | None | ERR553164 | HR-TB | lineage4.1.2.1 | None | SRR6650168 | Sensitive | lineage4.3.4.2 | None | SRR6650361 | Sensitive | lineage3 | None | SRR6650220 | Other | lineage3 | None | SRR6650243 | Sensitive | lineage4.1.1 | None | SRR6650303 | Other | lineage2.2.1 | None | SRR6650394 | Sensitive | lineage3 | None | SRR6650385 | Other | lineage1.2.2.2 | None | SRR6650390 | Sensitive | lineage4;lineage1.2.2.1 | None | SRR6650127 | Sensitive | None | SRR6797454 | Sensitive | lineage1.2.2.2 | None | SRR6650235 | Other | lineage3 | None | SRR6650175 | Sensitive | lineage1.2.2.2 | None | SRR6650111 | Sensitive | lineage1.2.2.2 | None | SRR6650319 | Sensitive | lineage1.1.3.1 | None | SRR6650285 | Sensitive | lineage4.8 | None | SRR6650161 | Other | lineage1.1.3 | None | SRR6650423 | HR-TB | lineage3 | None | SRR6650404 | Sensitive | lineage2.2.1 | None | SRR6650185 | HR-TB | lineage1.1.3.1 | None | SRR6650106 | Other | lineage3 | None | SRR6650210 | Sensitive | lineage1.1.3.1 | None | SRR6650227 | Sensitive | lineage1.1.3.1 | None | SRR6650399 | Sensitive | lineage4.1.2.1 | None | SRR6650299 | Other | lineage1.1.3.1 | None | SRR6650302 | Sensitive | lineage3 | None | SRR6650401 | Sensitive | lineage1.2.2.2 | None | ERR176771 | Sensitive | None | ERR553385 | Sensitive | lineage4.3.4.2 | de | ERR152760 | HR-TB | lineage2.2.2 | None | ERR551079 | Sensitive | lineage2.2.1 | sz | ERR551882 | Sensitive | lineage4.3.4.2 | de | ERR4815847 | Sensitive | lineage3 | None | ERR1200656 | Sensitive | lineage4.1.2.1 | et | ERR163970 | Sensitive | lineage4.6.1.2 | None | ERR4814691 | Sensitive | lineage4.7 | gb | ERR4815935 | Sensitive | lineage4.9 | None | SRR4033876 | Sensitive | lineage2.2.1 | None | SRR4033287 | Sensitive | lineage4.8.1 | None | ERR4817754 | Sensitive | lineage4.9 | None | SRR4034631 | Sensitive | lineage4.3.3 | za | ERR498366 | Sensitive | lineage4.1.2.1 | de | SRR4033413 | Sensitive | lineage4.3.2.1 | None | SRR5065625 | HR-TB | lineage2.2.1.1 | vn | SRR4034807 | Sensitive | lineage4.1.1 | za | SRR5065566 | Other | lineage2.2.1 | vn | ERR2513217 | Sensitive | lineage4.7 | None | SRR5065686 | HR-TB | lineage2.2.1 | vn | SRR4037649 | Other | lineage4.4.1.1 | None | SRR4037703 | Sensitive | lineage4.4.1.1 | None | ERR2512808 | Other | lineage1.2.2.2 | gb | SRR5073990 | Other | lineage2.2.1 | None | SRR5065226 | Sensitive | lineage2.2.1 | vn | ERR2513631 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR2513716 | Sensitive | lineage3.1.3 | gb | ERR4820221 | Other | lineage4.8 | None | ERR2513836 | Sensitive | lineage3 | gb | SRR6045432 | Other | lineage3 | gb | ERR2516477 | MDR-TB | lineage4.1.2.1 | nl | ERR2514439 | Sensitive | lineage4.1.1 | gb | ERR2516726 | MDR-TB | lineage4.3.4.2.1 | nl | ERR2516510 | MDR-TB | lineage4.3.3 | nl | ERR4819527 | Sensitive | lineage4.9 | None | ERR4819717 | Sensitive | lineage1.1.3.3 | gb | ERR2514929 | HR-TB | lineage1.1.2 | None | SRR6045480 | Other | lineage4.1.1 | None | ERR4821110 | Other | lineage2.2.1.2 | None | ERR2659166 | Sensitive | None | SRR6045614 | Other | lineage4.8 | None | SRR6046115 | Sensitive | lineage3 | None | SRR6046130 | HR-TB | lineage4.7;lineage4.2.1.1 | None | ERR4821671 | Sensitive | lineage1.1.2 | gb | SRR6045699 | Other | lineage3 | gb | SRR6045730 | Sensitive | lineage3 | gb | SRR6045758 | Sensitive | lineage4.3.4.2.1 | gb | SRR6044873 | Other | lineage4.1.1.3.1 | None | SRR6044993 | Other | lineage3 | None | SRR6045932 | MDR-TB | lineage4.2.2.2 | None | SRR6045915 | Other | lineage3 | gb | SRR6046290 | Sensitive | lineage3 | gb | SRR6045017 | Other | lineage3.1.2.2 | None | SRR6045163 | Other | lineage2.2.1 | None | SRR6045018 | Sensitive | lineage4.3.4.2 | None | SRR6045365 | Other | lineage3 | gb | SRR6045376 | HR-TB | lineage4.1.2.1 | gb | SRR6046436 | Sensitive | lineage4.3.3 | gb | SRR6046710 | Other | lineage4.8.2 | None | SRR6046775 | Sensitive | lineage3 | gb | SRR6650215 | Sensitive | lineage1.1.3.1 | None | SRR6046860 | Other | lineage4.4.1.1 | None | SRR6832019 | MDR-TB | lineage4.2.1.1 | None | SRR6832080 | Sensitive | lineage4.1.2.1 | None | SRR6797599 | Sensitive | lineage1.1.3.1 | None | SRR6832272 | MDR-TB | lineage2.2.1 | None | SRR9940986 | HR-TB | lineage4.9 | None | SRR6831730 | Sensitive | lineage4.3.3 | None | SRR10993957 | Other | La1.6 | None | ERR779679 | MDR-TB | lineage1.2.2.2 | None | ERR9117700 | MDR-TB | lineage1.2.1.2.1 | None | ERR9124895 | Sensitive | lineage4.4.2 | None | ERR9125356 | Sensitive | lineage1.2.1.2.1 | None | ERR779667 | Sensitive | lineage4.1.1.3 | None | ERR8773888 | Sensitive | lineage4.3.4.2 | None | ERR9117723 | Other | lineage4.1.1.3.1 | None | ERR9117781 | Other | lineage3.1.3 | None | SRR14001974 | Other | La1.7.1 | None | SRR1573693 | Sensitive | lineage4.4.2 | None | SRR1792247 | Other | La1.7.1 | None | SRR16058030 | Sensitive | lineage1.2.1.2.1 | None | SRR18213909 | Other | lineage4.1.2.1 | None |
---|