lineage | Count |
---|---|
lineage2.2.1 | 109 |
lineage4.2.2.1 | 12 |
lineage3 | 4 |
lineage1.2.2.2 | 60 |
lineage4.3.4.2 | 63 |
lineage1.1.2 | 14 |
lineage5.1.1 | 1 |
lineage1.1.3.1 | 1 |
lineage4.3.4.1 | 11 |
lineage4.6.1.2 | 7 |
lineage1.2.1.2.1 | 6 |
lineage4 | 2 |
lineage2.2.1.1 | 1 |
lineage1.2.2.1 | 2 |
lineage4.6 | 1 |
lineage4;lineage1.2.2.2 | 1 |
lineage4.3.3 | 1 |
lineage1.1.1.1 | 1 |
lineage1.1.1 | 2 |
lineage4.1.3 | 1 |
lineage4.1.2.1 | 2 |
La1.2 | 1 |
lineage4.8.1 | 1 |
lineage4.3.4.2;lineage4.3.3 | 1 |
lineage4.1.2 | 1 |
lineage2.2 | 1 |
lineage4.3.4 | 1 |
lineage4.8 | 1 |
spoligotype | Count |
---|---|
None | 309 |
ID | Drug resistance | Lineage | Country iso2 | ERR7911214 | MDR-TB | lineage2.2.1 | za | ERR2516274 | MDR-TB | lineage4.2.2.1 | be | ERR2510499 | Pre-XDR-TB | lineage3 | None | ERR4808981 | MDR-TB | lineage1.2.2.2 | None | ERR8975882 | MDR-TB | lineage2.2.1 | None | ERR1873559 | Pre-XDR-TB | lineage2.2.1 | za | ERR1034835 | MDR-TB | lineage4.3.4.2 | pt | ERR2864239 | MDR-TB | lineage4.3.4.2 | pt | ERR5918007 | MDR-TB | lineage2.2.1 | za | ERR7911691 | MDR-TB | lineage2.2.1 | za | ERR2515249 | MDR-TB | lineage1.2.2.2 | za | ERR1035244 | MDR-TB | lineage4.3.4.2 | pt | ERR8665946 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830494 | MDR-TB | lineage1.2.2.2 | za | ERR4809186 | MDR-TB | lineage1.2.2.2 | za | ERR5917973 | MDR-TB | lineage1.2.2.2 | None | SAMN02350462 | Pre-XDR-TB | lineage2.2.1 | za | SAMN02350436 | MDR-TB | lineage2.2.1 | za | ERR2515342 | MDR-TB | lineage1.2.2.2 | za | ERR7911532 | Pre-XDR-TB | lineage2.2.1 | za | ERR275229 | MDR-TB | lineage4.3.4.2 | pt | ERR8665947 | Pre-XDR-TB | lineage2.2.1 | None | ERR4809214 | MDR-TB | lineage1.2.2.2 | za | ERR275211 | MDR-TB | lineage4.3.4.2 | pt | ERR1873543 | Pre-XDR-TB | lineage2.2.1 | za | ERR4809203 | MDR-TB | lineage1.2.2.2 | za | ERR1035194 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR2100352 | MDR-TB | lineage1.2.2.2 | None | ERR275217 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1035179 | HR-TB | lineage4.3.4.2 | pt | SRR8380904 | MDR-TB | lineage1.1.2 | in | ERR2515749 | MDR-TB | lineage1.2.2.2 | za | ERR1873558 | Pre-XDR-TB | lineage2.2.1 | za | ERR3170490 | MDR-TB | lineage5.1.1 | gh | ERR7911630 | Pre-XDR-TB | lineage2.2.1 | za | ERR4809209 | Pre-XDR-TB | lineage2.2.1 | za | ERR4809185 | Pre-XDR-TB | lineage1.2.2.2 | za | ERR2515650 | MDR-TB | lineage2.2.1 | za | SAMN02350439 | MDR-TB | lineage2.2.1 | za | ERR2864297 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR1036282 | MDR-TB | lineage4.3.4.2 | pt | ERR2677466 | MDR-TB | lineage4.2.2.1 | de | SRR6824306 | MDR-TB | lineage2.2.1 | cn | ERR4816514 | HR-TB | lineage1.1.3.1 | gb | ERR8975693 | MDR-TB | lineage1.2.2.2 | None | ERR2864269 | MDR-TB | lineage4.3.4.2 | pt | ERR7911537 | Pre-XDR-TB | lineage2.2.1 | za | ERR752191 | MDR-TB | lineage2.2.1 | th | ERR1034669 | Pre-XDR-TB | lineage4.2.2.1 | bg | ERR4831238 | Pre-XDR-TB | lineage2.2.1 | de | ERR1035309 | Pre-XDR-TB | lineage4.3.4.1 | br | ERR2864294 | MDR-TB | lineage4.3.4.2 | pt | ERR1023325 | HR-TB | lineage4.6.1.2 | None | ERR1034902 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR275212 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR7911076 | MDR-TB | lineage2.2.1 | za | SAMN02599110 | HR-TB | lineage1.2.2.2 | in | ERR2515322 | Pre-XDR-TB | lineage2.2.1 | za | ERR2515962 | MDR-TB | lineage1.2.2.2 | za | ERR4809348 | MDR-TB | lineage1.2.2.2 | za | ERR4799563 | Pre-XDR-TB | lineage1.1.2 | in | ERR4809016 | MDR-TB | lineage1.2.2.2 | za | ERR1213924 | MDR-TB | lineage4.3.4.2 | pt | SRR6153226 | HR-TB | lineage1.2.1.2.1 | ca | SRR6369878 | HR-TB | lineage2.2.1 | au | SRR2101763 | MDR-TB | lineage1.2.2.2 | None | ERR1034909 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1036284 | MDR-TB | lineage4.3.4.2 | pt | ERR2515348 | MDR-TB | lineage1.2.2.2 | za | ERR779918 | MDR-TB | lineage4 | pe | ERR2515591 | Pre-XDR-TB | lineage2.2.1 | za | ERR400553 | MDR-TB | lineage4.3.4.2 | gb | SRR2101757 | MDR-TB | lineage1.2.2.2 | None | SRR5067425 | HR-TB | lineage2.2.1 | vn | ERR775380 | MDR-TB | lineage4 | pe | ERR2515777 | MDR-TB | lineage1.2.2.2 | za | ERR3256172 | HR-TB | lineage1.2.1.2.1 | ph | ERR1873471 | Pre-XDR-TB | lineage2.2.1 | za | ERR5917998 | MDR-TB | lineage2.2.1.1 | za | ERR8699105 | MDR-TB | lineage2.2.1 | None | ERR4809231 | MDR-TB | lineage1.2.2.2 | za | ERR1035221 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR5918020 | Pre-XDR-TB | lineage2.2.1 | za | ERR275227 | MDR-TB | lineage4.3.4.2 | pt | ERR2864271 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1035288 | Pre-XDR-TB | lineage4.3.4.1 | br | ERR7911620 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911695 | Pre-XDR-TB | lineage2.2.1 | za | ERR4799301 | MDR-TB | lineage1.1.2 | in | ERR7911706 | Pre-XDR-TB | lineage2.2.1 | za | ERR551538 | HR-TB | lineage2.2.1 | de | ERR7911384 | MDR-TB | lineage2.2.1 | us | ERR8975723 | HR-TB | lineage1.2.2.1 | None | ERR1035266 | Pre-XDR-TB | lineage4.3.4.1 | br | ERR7911560 | Pre-XDR-TB | lineage2.2.1 | za | ERR275207 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR2864283 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR2864288 | MDR-TB | lineage4.3.4.2 | pt | ERR8975849 | MDR-TB | lineage2.2.1 | None | ERR7911111 | MDR-TB | lineage2.2.1 | vn | ERR2515465 | MDR-TB | lineage1.2.2.2 | za | ERR4819939 | HR-TB | lineage4.6 | gb | ERR4831000 | MDR-TB | lineage2.2.1 | de | ERR4820421 | MDR-TB | lineage1.2.1.2.1 | gb | ERR8976089 | MDR-TB | lineage1.2.2.2 | None | ERR1035186 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR4809084 | MDR-TB | lineage1.2.2.2 | za | ERR7911625 | Pre-XDR-TB | lineage2.2.1 | za | ERR275221 | MDR-TB | lineage4.3.4.2 | pt | ERR275219 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR7911647 | Pre-XDR-TB | lineage2.2.1 | za | ERR551920 | MDR-TB | lineage1.2.2.2 | sz | SAMN02414854 | Pre-XDR-TB | lineage4.6.1.2 | se | ERR1035187 | MDR-TB | lineage4.3.4.2 | pt | ERR4809078 | MDR-TB | lineage4;lineage1.2.2.2 | za | ERR1035321 | Pre-XDR-TB | lineage4.3.4.1 | br | SAMN02585975 | MDR-TB | lineage1.2.2.2 | za | ERR8975668 | Pre-XDR-TB | lineage2.2.1 | None | ERR4812313 | MDR-TB | lineage4.3.3 | None | SAMN02414975 | Pre-XDR-TB | lineage2.2.1 | se | ERR4828268 | HR-TB | lineage1.1.1.1 | None | ERR1036285 | MDR-TB | lineage4.3.4.2 | pt | ERR4809002 | MDR-TB | lineage1.2.2.2 | za | ERR1034823 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1873491 | Pre-XDR-TB | lineage2.2.1 | za | ERR1035243 | MDR-TB | lineage4.3.4.2 | pt | ERR2515802 | Pre-XDR-TB | lineage1.2.2.2 | za | ERR4809201 | MDR-TB | lineage1.2.2.2 | za | ERR8976044 | Pre-XDR-TB | lineage2.2.1 | None | ERR2515131 | MDR-TB | lineage1.2.2.2 | za | ERR1873537 | Pre-XDR-TB | lineage2.2.1 | za | ERR1034873 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR4796689 | Pre-XDR-TB | lineage1.1.2 | in | ERR1035237 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR8976063 | MDR-TB | lineage1.2.2.2 | None | ERR2515514 | MDR-TB | lineage1.2.2.2 | za | ERR552495 | MDR-TB | lineage1.2.2.2 | sz | ERR275224 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR4828390 | HR-TB | lineage1.1.1 | vn | ERR2515660 | Pre-XDR-TB | lineage2.2.1 | za | ERR4800502 | MDR-TB | lineage1.1.2 | in | ERR1034821 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR4809350 | MDR-TB | lineage1.2.2.2 | za | ERR1873565 | Pre-XDR-TB | lineage2.2.1 | za | ERR1633964 | MDR-TB | lineage2.2.1 | za | ERR8975046 | MDR-TB | lineage1.2.2.1 | None | ERR2515376 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873499 | Pre-XDR-TB | lineage2.2.1 | za | ERR4809027 | MDR-TB | lineage1.2.2.2 | za | SAMN02586055 | MDR-TB | lineage1.2.2.2 | za | ERR1035176 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR4809013 | MDR-TB | lineage1.2.2.2 | za | ERR1679586 | MDR-TB | lineage4.1.3 | ng | ERR2515798 | MDR-TB | lineage1.2.2.2 | za | SRR5341316 | XDR-TB | lineage2.2.1 | in | SRR8380895 | MDR-TB | lineage1.1.2 | in | ERR2510557 | Pre-XDR-TB | lineage1.1.2 | pk | ERR1873438 | Pre-XDR-TB | lineage2.2.1 | za | ERR1034855 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR1723624 | MDR-TB | lineage2.2.1 | cn | SRR7898215 | HR-TB | lineage4.1.2.1 | None | ERR7911638 | Pre-XDR-TB | lineage2.2.1 | za | ERR2516840 | MDR-TB | lineage4.3.4.2 | gb | ERR4822367 | MDR-TB | lineage1.2.1.2.1 | None | ERR7911650 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911707 | Pre-XDR-TB | lineage2.2.1 | za | ERR2510266 | MDR-TB | lineage1.1.2 | pk | ERR4809187 | Pre-XDR-TB | lineage1.2.2.2 | za | ERR551329 | MDR-TB | lineage1.2.2.2 | sz | ERR2864253 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1465811 | HR-TB | lineage4.1.2.1 | co | ERR1034886 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR2864236 | MDR-TB | lineage4.3.4.1 | pt | SAMN02350432 | Pre-XDR-TB | lineage2.2.1 | za | ERR4796357 | Pre-XDR-TB | lineage1.1.2 | in | ERR2515163 | Pre-XDR-TB | lineage1.2.2.2 | za | ERR7911672 | Pre-XDR-TB | lineage2.2.1 | za | ERR2516252 | MDR-TB | La1.2 | be | ERR4809274 | MDR-TB | lineage1.2.2.2 | za | ERR1034664 | MDR-TB | lineage4.2.2.1 | bg | SAMN02586077 | Pre-XDR-TB | lineage1.2.2.2 | za | ERR1023521 | MDR-TB | lineage2.2.1 | None | ERR7911635 | Pre-XDR-TB | lineage2.2.1 | za | ERR275210 | HR-TB | lineage4.3.4.2 | pt | ERR1035181 | MDR-TB | lineage4.3.4.2 | pt | ERR1873484 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873557 | Pre-XDR-TB | lineage2.2.1 | None | ERR2515123 | MDR-TB | lineage4.8.1 | za | ERR4829932 | Pre-XDR-TB | lineage1.1.2 | None | ERR275222 | MDR-TB | lineage4.3.4.2 | pt | ERR5918012 | Pre-XDR-TB | lineage2.2.1 | za | ERR8975715 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034668 | MDR-TB | lineage4.2.2.1 | bg | ERR1034911 | MDR-TB | lineage4.3.4.2;lineage4.3.3 | pt | SRR6824546 | Pre-XDR-TB | lineage2.2.1 | cn | ERR8976116 | MDR-TB | lineage2.2.1 | None | ERR1873481 | Pre-XDR-TB | lineage2.2.1 | za | ERR2515250 | Pre-XDR-TB | lineage2.2.1 | za | ERR8665603 | Pre-XDR-TB | lineage2.2.1 | None | SRR5709916 | MDR-TB | lineage1.1.1 | th | ERR2864289 | MDR-TB | lineage4.3.4.2 | pt | ERR4809189 | MDR-TB | lineage1.2.2.2 | za | SAMEA2533546 | HR-TB | lineage2.2.1 | uz | ERR2516929 | MDR-TB | lineage1.2.2.2 | gb | ERR2515252 | MDR-TB | lineage1.2.2.2 | za | ERR1035225 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1873451 | Pre-XDR-TB | lineage2.2.1 | za | ERR8699802 | MDR-TB | lineage2.2.1 | None | ERR2677462 | MDR-TB | lineage4.2.2.1 | de | ERR2517023 | Pre-XDR-TB | lineage3 | gb | ERR4808992 | MDR-TB | lineage1.2.2.2 | za | ERR4808962 | MDR-TB | lineage1.2.2.2 | za | ERR2864225 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1035234 | MDR-TB | lineage4.3.4.2 | pt | ERR1035076 | Pre-XDR-TB | lineage2.2.1 | za | SRR671781 | Pre-XDR-TB | lineage2.2.1 | cn | SRR6824310 | MDR-TB | lineage2.2.1 | cn | ERR1873455 | Pre-XDR-TB | lineage2.2.1 | za | ERR1035265 | MDR-TB | lineage4.3.4.1 | br | ERR7911594 | Pre-XDR-TB | lineage2.2.1 | za | ERR1035315 | Pre-XDR-TB | lineage4.3.4.1 | br | ERR1023347 | HR-TB | lineage4.6.1.2 | None | ERR2515810 | Pre-XDR-TB | lineage2.2.1 | za | ERR1633956 | MDR-TB | lineage2.2.1 | za | ERR1035228 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR2864240 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR7911617 | Pre-XDR-TB | lineage2.2.1 | za | ERR7911552 | Pre-XDR-TB | lineage2.2.1 | za | ERR1035247 | MDR-TB | lineage4.3.4.2 | pt | ERR4799930 | Pre-XDR-TB | lineage1.1.2 | in | ERR1873457 | Pre-XDR-TB | lineage2.2.1 | za | ERR2707216 | MDR-TB | lineage4.3.4.1 | cd | SAMN02403527 | MDR-TB | lineage2.2.1 | za | SAMN02414841 | HR-TB | lineage4.6.1.2 | se | ERR2503477 | MDR-TB | lineage1.2.2.2 | None | ERR1036293 | MDR-TB | lineage4.3.4.2 | pt | ERR2510554 | Pre-XDR-TB | lineage1.1.2 | pk | ERR2864264 | MDR-TB | lineage4.3.4.2 | pt | SAMN02403526 | MDR-TB | lineage2.2.1 | za | ERR4820231 | HR-TB | lineage4.6.1.2 | gb | SRR6152932 | HR-TB | lineage1.2.1.2.1 | ca | ERR275184 | Pre-XDR-TB | lineage4.3.4.2 | pt | SAMN02350408 | Pre-XDR-TB | lineage2.2.1 | za | ERR1036295 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR8976062 | MDR-TB | lineage1.2.2.2 | None | ERR1633934 | HR-TB | lineage4.1.2 | za | SRR5341353 | XDR-TB | lineage2.2.1 | in | ERR1036291 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR7911685 | Pre-XDR-TB | lineage2.2.1 | za | ERR4809303 | Pre-XDR-TB | lineage1.2.2.2 | za | ERR7911669 | Pre-XDR-TB | lineage2.2.1 | za | ERR551319 | MDR-TB | lineage1.2.2.2 | sz | ERR550754 | MDR-TB | lineage1.2.2.2 | sz | ERR553321 | MDR-TB | lineage1.2.2.2 | sz | ERR1034844 | MDR-TB | lineage4.3.4.2 | pt | SRR16149141 | MDR-TB | lineage4.2.2.1 | None | ERR9119694 | MDR-TB | lineage2.2 | None | ERR10969172 | MDR-TB | lineage4.3.4 | None | SRR16149142 | MDR-TB | lineage4.2.2.1 | None | SRR16149144 | MDR-TB | lineage4.2.2.1 | None | SRR16149147 | MDR-TB | lineage4.2.2.1 | None | ERR7911703 | Pre-XDR-TB | lineage2.2.1 | za | SRR23339962 | HR-TB | lineage4.8 | None | SAMN01828251 | MDR-TB | lineage1.2.2.2 | za | ERR4808990 | MDR-TB | lineage1.2.2.2 | za | ERR8686567 | MDR-TB | lineage2.2.1 | None | ERR4822355 | MDR-TB | lineage2.2.1 | None | ERR2677440 | Pre-XDR-TB | lineage2.2.1 | de | ERR1873450 | Pre-XDR-TB | lineage2.2.1 | za | SAMN02053802 | MDR-TB | lineage1.2.2.2 | za | ERR7911686 | MDR-TB | lineage2.2.1 | za | ERR1035328 | Pre-XDR-TB | lineage4.3.4.1 | br | ERR1035220 | MDR-TB | lineage4.3.4.2 | pt | SAMEA2533964 | MDR-TB | lineage2.2.1 | uz | ERR1873501 | Pre-XDR-TB | lineage2.2.1 | za | ERR2864284 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR4800587 | Pre-XDR-TB | lineage3 | in | SAMN02414984 | Pre-XDR-TB | lineage2.2.1 | se | ERR2864250 | MDR-TB | lineage4.3.4.2 | pt | ERR1035318 | Pre-XDR-TB | lineage4.3.4.1 | br | ERR4814443 | HR-TB | lineage4.6.1.2 | gb | ERR553134 | MDR-TB | lineage1.2.2.2 | sz | ERR2510691 | MDR-TB | lineage4.2.2.1 | it | ERR7911705 | Pre-XDR-TB | lineage2.2.1 | za | SRR1723625 | MDR-TB | lineage2.2.1 | cn | SRR8380857 | HR-TB | lineage1.1.2 | in | ERR2515304 | Pre-XDR-TB | lineage2.2.1 | za | ERR4799333 | Pre-XDR-TB | lineage3 | in | SRR1723638 | Pre-XDR-TB | lineage2.2.1 | cn | ERR2864218 | MDR-TB | lineage4.3.4.2 | pt | ERR1873563 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911070 | MDR-TB | lineage2.2.1 | za | ERR7911678 | Pre-XDR-TB | lineage2.2.1 | za | ERR2516226 | MDR-TB | lineage2.2.1 | be | ERR1035322 | MDR-TB | lineage4.3.4.1 | br | ERR2516057 | MDR-TB | lineage1.2.2.2 | za | ERR2515488 | MDR-TB | lineage2.2.1 | za | SRR671796 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4818111 | HR-TB | lineage4.6.1.2 | gb | ERR1034879 | MDR-TB | lineage4.3.4.2 | pt | ERR4822293 | MDR-TB | lineage4.2.2.1 | de | ERR1035203 | MDR-TB | lineage4.3.4.2 | pt | ERR7911533 | Pre-XDR-TB | lineage2.2.1 | za | ERR3256207 | MDR-TB | lineage1.2.1.2.1 | ph | ERR7911692 | Pre-XDR-TB | lineage2.2.1 | za | ERR2510553 | Pre-XDR-TB | lineage1.1.2 | pk | ERR1034894 | MDR-TB | lineage4.3.4.2 | pt | ERR2515648 | MDR-TB | lineage1.2.2.2 | za | ERR7911420 | MDR-TB | lineage2.2.1 | us |
---|