lineage | Count |
---|---|
lineage2.2.1 | 95 |
lineage4.4.1.1;lineage4.6.1.2 | 4 |
lineage4.3.3 | 7 |
lineage4.6.2.2 | 2 |
lineage4.6.1.1 | 1 |
lineage4.1.1.1 | 1 |
lineage2.2.2 | 10 |
lineage4.9 | 1 |
lineage4.6.1.2 | 11 |
lineage2.2.1.1 | 1 |
lineage4.8 | 3 |
lineage4.1.1.3 | 1 |
lineage3 | 2 |
lineage4.4 | 1 |
lineage1.1.1 | 1 |
lineage4.4.2 | 1 |
lineage2.2 | 1 |
lineage4.3.4.1 | 2 |
lineage4.7 | 1 |
lineage4.3.4.2 | 1 |
lineage2.2.1.2 | 1 |
spoligotype | Count |
---|---|
None | 148 |
ID | Drug resistance | Lineage | Country iso2 |
---|---|---|---|
ERR4809174 | RR-TB | lineage2.2.1 | za |
SRR1140691 | HR-TB | lineage4.4.1.1;lineage4.6.1.2 | None |
SRR29094456 | MDR-TB | lineage4.3.3 | None |
SRR21713566 | Sensitive | lineage4.3.3 | None |
SRR1062873 | HR-TB | lineage4.4.1.1;lineage4.6.1.2 | None |
SRR15723080 | Sensitive | lineage2.2.1 | None |
ERR13290457 | MDR-TB | lineage2.2.1 | None |
SRR5073771 | HR-TB | lineage2.2.1 | vn |
SRR1049033 | Pre-XDR-TB | lineage2.2.1 | None |
ERR13258456 | RR-TB | lineage2.2.1 | None |
ERR1679645 | Sensitive | lineage4.6.2.2 | None |
SRR26399902 | Other | lineage2.2.1 | None |
SRR1144820 | Pre-XDR-TB | lineage2.2.1 | None |
ERR10748414 | MDR-TB | lineage2.2.1 | None |
SAMN02360598 | Pre-XDR-TB | lineage2.2.1 | kr |
SRR1013638 | Pre-XDR-TB | lineage2.2.1 | None |
ERR7737719 | MDR-TB | lineage2.2.1 | None |
ERR13284716 | MDR-TB | lineage2.2.1 | None |
SRR24709919 | MDR-TB | lineage2.2.1 | None |
ERR13288855 | RR-TB | lineage2.2.1 | None |
ERR4596933 | RR-TB | lineage4.6.1.1 | None |
SRR1723558 | MDR-TB | lineage2.2.1 | None |
SRR29053403 | HR-TB | lineage4.1.1.1 | None |
SRR29093902 | MDR-TB | lineage2.2.1 | None |
ERR13245252 | Pre-XDR-TB | lineage2.2.2 | None |
SRR29094073 | Sensitive | lineage4.9 | None |
ERR4812149 | HR-TB | lineage4.3.3 | pe |
SRR1163321 | MDR-TB | lineage2.2.1 | None |
ERR552176 | HR-TB | lineage2.2.2 | None |
ERR552177 | HR-TB | lineage2.2.2 | None |
SAMEA2534464 | HR-TB | lineage2.2.2 | kr |
SRR28394015 | MDR-TB | lineage4.3.3 | None |
ERR4553676 | RR-TB | lineage2.2.1 | None |
ERR8699821 | MDR-TB | lineage2.2.1 | None |
SRR20969971 | HR-TB | lineage2.2.1 | None |
ERR5987331 | MDR-TB | lineage2.2.1 | None |
ERR550694 | MDR-TB | lineage4.6.1.2 | cg |
ERR550693 | MDR-TB | lineage4.6.1.2 | cg |
SRR6824649 | MDR-TB | lineage2.2.1 | cn |
ERR13258489 | HR-TB | lineage2.2.1 | None |
SRR6824577 | Pre-XDR-TB | lineage2.2.1 | cn |
SRR1144805 | Pre-XDR-TB | lineage2.2.1 | None |
SRR1163418 | MDR-TB | lineage2.2.1 | None |
SRR25515102 | MDR-TB | lineage2.2.1 | None |
ERR4797498 | Pre-XDR-TB | lineage2.2.1 | in |
SRR1047988 | Pre-XDR-TB | lineage2.2.1 | None |
SAMN02414922 | MDR-TB | lineage2.2.1 | se |
SRR1049563 | HR-TB | lineage4.4.1.1;lineage4.6.1.2 | None |
SRR12420503 | Sensitive | lineage2.2.2 | None |
ERR13194083 | XDR-TB | lineage2.2.2 | None |
SRR10808984 | Sensitive | lineage2.2.1 | None |
SRR1723555 | MDR-TB | lineage2.2.1 | cn |
SRR5526784 | MDR-TB | lineage2.2.1.1 | None |
SRR1174313 | MDR-TB | lineage4.6.1.2 | None |
SRR12420383 | Sensitive | lineage2.2.2 | None |
SRR12420584 | RR-TB | lineage2.2.1 | None |
ERR4553743 | RR-TB | lineage4.8 | None |
SRR29017093 | MDR-TB | lineage4.8 | None |
SRR29772533 | MDR-TB | lineage4.1.1.3 | None |
ERR2184397 | MDR-TB | lineage2.2.1 | pe |
SRR29096265 | Sensitive | lineage2.2.1 | None |
SRR16157046 | MDR-TB | lineage2.2.1 | None |
SRR1049564 | HR-TB | lineage4.4.1.1;lineage4.6.1.2 | None |
SRR1144766 | Pre-XDR-TB | lineage2.2.1 | None |
SAMN02398714 | Pre-XDR-TB | lineage2.2.1 | kr |
ERR4830972 | MDR-TB | lineage2.2.1 | np |
SRR6964636 | MDR-TB | lineage3 | None |
ERR2516357 | MDR-TB | lineage4.8 | be |
ERR1023404 | MDR-TB | lineage2.2.1 | None |
SRR10305619 | Pre-XDR-TB | lineage2.2.1 | None |
SRR6339665 | MDR-TB | lineage2.2.1 | None |
ERR11069120 | MDR-TB | lineage2.2.1 | None |
SRR21747019 | XDR-TB | lineage2.2.1 | None |
SRR25515597 | Pre-XDR-TB | lineage2.2.1 | None |
SRR21887776 | Pre-XDR-TB | lineage2.2.1 | None |
SRR10040405 | MDR-TB | lineage4.4 | None |
SRR5709994 | MDR-TB | lineage2.2.1 | th |
SAMN02381022 | MDR-TB | lineage4.6.1.2 | ug |
ERR038750 | MDR-TB | lineage4.6.1.2 | ug |
SRR5073563 | Sensitive | lineage2.2.1 | vn |
SRR1723556 | Pre-XDR-TB | lineage2.2.1 | cn |
SRR5074134 | HR-TB | lineage1.1.1 | vn |
SRR12420496 | RR-TB | lineage2.2.1 | None |
ERR4811556 | RR-TB | lineage4.4.2 | cn |
SRR12420288 | HR-TB | lineage2.2.2 | None |
DRR130149 | RR-TB | lineage2.2.1 | None |
SRR25534464 | Sensitive | lineage2.2.1 | None |
SRR20969708 | HR-TB | lineage2.2 | None |
ERR11138649 | Pre-XDR-TB | lineage2.2.1 | None |
SRR1144802 | MDR-TB | lineage2.2.1 | None |
SRR1146413 | MDR-TB | lineage2.2.1 | None |
SRR1162860 | MDR-TB | lineage2.2.1 | None |
ERR13195541 | MDR-TB | lineage2.2.2 | None |
SRR1173544 | MDR-TB | lineage4.6.1.2 | None |
SRR21747030 | MDR-TB | lineage2.2.1 | None |
ERR13286226 | RR-TB | lineage2.2.1 | None |
ERR13290456 | MDR-TB | lineage2.2.1 | None |
SRR22249648 | Other | lineage2.2.1 | None |
ERR13290690 | RR-TB | lineage2.2.1 | None |
SRR1049652 | MDR-TB | lineage4.6.1.2 | None |
ERR13290710 | XDR-TB | lineage2.2.1 | None |
SRR1723559 | Pre-XDR-TB | lineage2.2.1 | None |
ERR13290455 | MDR-TB | lineage2.2.1 | None |
ERR10748570 | MDR-TB | lineage2.2.1 | None |
SRR13870370 | Pre-XDR-TB | lineage2.2.1 | None |
ERR9806945 | Pre-XDR-TB | lineage2.2.1 | None |
SRR21576673 | XDR-TB | lineage2.2.1 | None |
SRR30180347 | XDR-TB | lineage2.2.1 | None |
SRR24827290 | Sensitive | lineage4.3.3 | None |
SRR10185941 | MDR-TB | lineage4.3.4.1 | None |
ERR13290807 | XDR-TB | lineage2.2.1 | None |
SRR28858731 | MDR-TB | lineage4.3.3 | None |
SRR24083705 | Sensitive | lineage2.2.1 | None |
ERR7361982 | Pre-XDR-TB | lineage2.2.1 | None |
ERR987757 | MDR-TB | lineage4.6.1.2 | None |
SRR29016820 | MDR-TB | lineage2.2.1 | None |
SRR1166867 | MDR-TB | lineage2.2.1 | None |
ERR2984785 | MDR-TB | lineage4.7 | None |
SAMN02398702 | Pre-XDR-TB | lineage2.2.1 | kr |
SRR6824467 | Pre-XDR-TB | lineage2.2.1 | cn |
SRR1049032 | Pre-XDR-TB | lineage2.2.1 | None |
SRR29231140 | Sensitive | lineage3 | None |
SRR16156813 | Pre-XDR-TB | lineage2.2.1 | None |
SRR1013639 | Pre-XDR-TB | lineage2.2.1 | None |
ERR1679657 | Sensitive | lineage4.6.2.2 | ng |
SRR19276617 | Sensitive | lineage4.3.4.2 | None |
SRR16103889 | HR-TB | lineage2.2.1 | None |
ERR13292094 | HR-TB | lineage2.2.1 | None |
SRR11972218 | MDR-TB | lineage2.2.1 | None |
SRR29093664 | Pre-XDR-TB | lineage2.2.1 | None |
SRR10869226 | MDR-TB | lineage2.2.2 | None |
SAMN02414920 | MDR-TB | lineage2.2.1 | se |
ERR4972556 | MDR-TB | lineage4.3.3 | None |
ERR9119750 | MDR-TB | lineage2.2.1 | None |
SAMN02398701 | Pre-XDR-TB | lineage2.2.1 | kr |
ERR2984792 | Pre-XDR-TB | lineage4.3.4.1 | None |
SRR1140664 | MDR-TB | lineage4.6.1.2 | None |
ERR3273196 | MDR-TB | lineage2.2.1.2 | None |
SRR13423591 | Pre-XDR-TB | lineage2.2.1 | None |
ERR4808874 | RR-TB | lineage2.2.1 | za |
SRR10808621 | MDR-TB | lineage2.2.1 | None |
SRR1049651 | MDR-TB | lineage4.6.1.2 | None |
SRR1723557 | Pre-XDR-TB | lineage2.2.1 | cn |
ERR13288853 | RR-TB | lineage2.2.1 | None |
SRR29055877 | Pre-XDR-TB | lineage2.2.1 | None |
SRR6824464 | Pre-XDR-TB | lineage2.2.1 | cn |
ERR13290454 | MDR-TB | lineage2.2.1 | None |
SRR1062912 | MDR-TB | lineage4.6.1.2 | None |