lineage | Count |
---|---|
lineage2.2.2 | 7 |
lineage4.8 | 49 |
lineage4.3.3 | 9 |
lineage4.4.2 | 5 |
lineage2.2.1 | 28 |
lineage4.3.4.1 | 1 |
lineage4.4.1.1 | 13 |
lineage3 | 25 |
lineage4.1.2.1 | 5 |
lineage2.1 | 1 |
lineage4.5 | 5 |
lineage4.1.1.3 | 1 |
lineage2.2.1;lineage2.2.2 | 1 |
lineage4.3.4.2 | 1 |
lineage4.2.2.2 | 4 |
lineage4 | 1 |
lineage1.2.1.2 | 4 |
La1.7.X-unk4 | 2 |
lineage4.3.2 | 2 |
lineage4.1.2 | 3 |
lineage1.1.2 | 3 |
lineage1.2.1.2.1 | 1 |
lineage4.3.4.2.1 | 1 |
lineage1.1.1.1 | 1 |
lineage2.2.1.2 | 1 |
lineage1.1.3.1 | 1 |
spoligotype | Count |
---|---|
None | 175 |
ID | Drug resistance | Lineage | Country iso2 | SRR28119719 | MDR-TB | lineage2.2.2 | None | SRR23861916 | Sensitive | lineage4.8 | None | ERR13291027 | MDR-TB | lineage2.2.2 | None | SRR8651558 | XDR-TB | lineage2.2.2 | cn | SRR21732545 | Sensitive | lineage4.3.3 | None | ERR4813938 | Sensitive | lineage4.8 | br | SRR25534425 | Other | lineage4.4.2 | None | ERR13290993 | MDR-TB | lineage2.2.2 | None | ERR9125274 | Sensitive | lineage4.8 | None | ERR2600431 | Sensitive | lineage4.8 | None | SRR13232575 | Pre-XDR-TB | lineage2.2.1 | None | ERR11080984 | Sensitive | lineage4.3.4.1 | None | ERR11466187 | Sensitive | lineage4.4.1.1 | None | ERR4799787 | MDR-TB | lineage3 | None | ERR11044216 | Other | lineage4.1.2.1 | None | SRR2101043 | Sensitive | lineage3 | None | SRR25207278 | MDR-TB | lineage2.2.1 | None | SRR21732169 | Sensitive | lineage4.3.3 | None | SRR21732436 | Sensitive | lineage4.3.3 | None | SRR26399217 | HR-TB | lineage2.2.1 | None | SRR26399343 | HR-TB | lineage2.2.1 | None | SRR2101082 | Sensitive | lineage4.1.2.1 | None | SRR21732393 | Sensitive | lineage3 | None | SRR16057920 | Sensitive | lineage4.8 | None | SRR16058062 | Sensitive | lineage4.8 | None | ERR11067869 | Sensitive | lineage2.2.1 | None | ERR11067993 | Sensitive | lineage4.4.1.1 | None | SRR20969910 | Sensitive | lineage2.1 | None | DRR474110 | Sensitive | lineage2.2.1 | None | ERR4822509 | Sensitive | lineage4.5 | de | ERR13291444 | Sensitive | lineage3 | None | SRR25534518 | HR-TB | lineage2.2.1 | None | ERR4810828 | Sensitive | lineage4.5 | cn | ERR11049882 | Sensitive | lineage4.1.1.3 | None | SRR21277221 | Sensitive | lineage2.2.1;lineage2.2.2 | None | ERR270761 | Sensitive | lineage3 | None | ERR3258007 | Sensitive | lineage4.4.1.1 | fr | SRR21732442 | Sensitive | lineage3 | None | SRR15315966 | Sensitive | lineage4.4.2 | None | ERR9125076 | Sensitive | lineage4.8 | None | ERR9125116 | Sensitive | lineage4.8 | None | ERR9124965 | Sensitive | lineage4.8 | None | ERR9125217 | Sensitive | lineage4.8 | None | SRR15723024 | Pre-XDR-TB | lineage2.2.2 | None | SRR11033628 | Sensitive | lineage4.1.2.1 | None | ERR11465567 | MDR-TB | lineage4.4.1.1 | None | ERR13266566 | Sensitive | lineage3 | None | SRR16058396 | Sensitive | lineage4.8 | None | ERR2199782 | HR-TB | lineage3 | de | SRR28044688 | XDR-TB | lineage3 | None | SRR18549003 | HR-TB | lineage2.2.1 | None | ERR4811729 | Other | lineage4.3.4.2 | pe | ERR9124960 | Sensitive | lineage4.8 | None | ERR2179748 | Sensitive | lineage4.4.2 | cn | ERR9125262 | Sensitive | lineage4.8 | None | ERR9125019 | Sensitive | lineage4.8 | None | ERR9125214 | Sensitive | lineage4.8 | None | SAMEA104362069 | Sensitive | lineage4.1.2.1 | None | SRR25514907 | Sensitive | lineage2.2.1 | None | ERR9125119 | Sensitive | lineage4.8 | None | ERR9125369 | Sensitive | lineage4.8 | None | SRR16058587 | Sensitive | lineage4.8 | None | ERR2514586 | Sensitive | lineage4.4.1.1 | gb | ERR4276883 | MDR-TB | lineage4.2.2.2 | None | SRR29126438 | Sensitive | lineage4.1.2.1 | None | ERR9125134 | Sensitive | lineage4.8 | None | ERR9125181 | Sensitive | lineage4.8 | None | ERR9125238 | Sensitive | lineage4.8 | None | ERR13262238 | Sensitive | lineage4.5 | None | ERR11466114 | MDR-TB | lineage4.4.1.1 | None | ERR3258009 | Sensitive | lineage4.4.1.1 | fr | SRR16058513 | Sensitive | lineage4.8 | None | ERR11081471 | Sensitive | lineage4 | None | SRR6063519 | Sensitive | lineage4.8 | ca | ERR9125018 | Sensitive | lineage4.8 | None | SRR29096153 | Sensitive | lineage3 | None | SRR16058480 | Other | lineage3 | None | SRR20970017 | HR-TB | lineage2.2.1 | None | SRR27450490 | Sensitive | lineage4.3.3 | None | SRR29096230 | Sensitive | lineage1.2.1.2 | None | ERR9125057 | Sensitive | lineage4.8 | None | SRR15368792 | Pre-XDR-TB | lineage4.4.2 | None | SRR12006524 | Sensitive | lineage1.2.1.2 | None | SRR18495626 | Sensitive | lineage2.2.1 | None | ERR9125259 | Sensitive | lineage4.8 | None | SRR12142423 | Sensitive | lineage2.2.1 | None | SRR21277542 | HR-TB | lineage2.2.1 | None | SRR17856659 | Pre-XDR-TB | lineage3 | None | ERR9125115 | Sensitive | lineage4.8 | None | SRR11567804 | XDR-TB | lineage2.2.2 | None | ERR13276058 | Sensitive | lineage4.8 | None | ERR13291028 | MDR-TB | lineage2.2.1 | None | SRR28351340 | HR-TB | lineage3 | None | SRR21732423 | Sensitive | lineage4.3.3 | None | ERR2815560 | Other | La1.7.X-unk4 | None | SRR15316343 | HR-TB | lineage2.2.1 | None | ERR11044383 | Sensitive | lineage4.3.2 | None | ERR9124978 | Sensitive | lineage4.8 | None | SRR6045473 | Sensitive | lineage3 | None | SRR6064834 | Sensitive | lineage4.8 | ca | ERR11049404 | Other | La1.7.X-unk4 | None | ERR3258006 | Sensitive | lineage4.4.1.1 | fr | ERR11044120 | Sensitive | lineage4.3.2 | None | SRR6280301 | HR-TB | lineage2.2.1 | cn | SRR13232631 | Other | lineage4.1.2 | None | SRR28045211 | Sensitive | lineage3 | None | ERR8975024 | MDR-TB | lineage4.1.2 | None | SRR13232521 | MDR-TB | lineage2.2.1 | None | SRR21277407 | HR-TB | lineage4.5 | None | SRR28045895 | Sensitive | lineage1.1.2 | None | SRR29385488 | MDR-TB | lineage2.2.1 | None | ERR13288745 | MDR-TB | lineage4.1.2 | None | SRR6280309 | HR-TB | lineage2.2.1 | cn | SRR16058278 | Sensitive | lineage4.8 | None | SRR16058530 | Sensitive | lineage4.8 | None | SRR16058059 | Sensitive | lineage4.8 | None | SRR21732125 | Sensitive | lineage4.3.3 | None | ERR9125474 | Sensitive | lineage4.8 | None | ERR9125089 | Sensitive | lineage4.8 | None | ERR9125329 | Sensitive | lineage4.8 | None | SRR21277231 | Sensitive | lineage2.2.1 | None | SRR21732156 | Sensitive | lineage4.3.3 | None | SRR28858568 | Other | lineage1.2.1.2 | None | SRR6807727 | Sensitive | lineage4.4.1.1 | None | SRR12006607 | Sensitive | lineage1.2.1.2.1 | None | ERR8665906 | Pre-XDR-TB | lineage2.2.1 | None | SRR16057902 | Sensitive | lineage4.8 | None | SRR16058129 | Sensitive | lineage4.8 | None | SRR21277863 | Pre-XDR-TB | lineage4.4.2 | None | ERR10610072 | RR-TB | lineage4.3.4.2.1 | None | SRR15316593 | Sensitive | lineage2.2.1 | None | SRR15368729 | Sensitive | lineage2.2.1 | None | ERR9125240 | Sensitive | lineage4.8 | None | ERR9125723 | Sensitive | lineage4.8 | None | ERR9125145 | Sensitive | lineage4.8 | None | ERR3258005 | Sensitive | lineage4.4.1.1 | fr | ERR11775600 | Sensitive | lineage4.2.2.2 | None | ERR11043866 | Sensitive | lineage4.3.3 | None | ERR4816840 | Sensitive | lineage3 | None | SRR29126961 | Sensitive | lineage4.4.1.1 | None | ERR4811578 | Sensitive | lineage4.5 | cn | SRR28351440 | XDR-TB | lineage3 | None | ERR11466515 | MDR-TB | lineage4.4.1.1 | None | SRR5073793 | HR-TB | lineage1.1.1.1 | vn | ERR9125056 | Sensitive | lineage4.8 | None | ERR9125033 | Sensitive | lineage4.8 | None | ERR9125131 | Sensitive | lineage4.8 | None | SRR2101004 | Sensitive | lineage3 | None | SRR29096535 | Sensitive | lineage1.2.1.2 | None | ERR13291053 | Pre-XDR-TB | lineage2.2.2 | None | ERR9125142 | Sensitive | lineage4.8 | None | ERR9125175 | Sensitive | lineage4.8 | None | ERR9125299 | Sensitive | lineage4.8 | None | SRR28046086 | Sensitive | lineage1.1.2 | None | SRR25827692 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR17732463 | Sensitive | lineage2.2.1 | None | ERR9125855 | Other | lineage3 | None | SRR28119842 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800107 | Sensitive | lineage3 | None | SRR25207123 | MDR-TB | lineage2.2.1 | None | SRR2100863 | Sensitive | lineage3 | None | SRR22250145 | Sensitive | lineage1.1.3.1 | None | SRR13232577 | MDR-TB | lineage2.2.1 | None | ERR4596928 | Sensitive | lineage3 | None | SRR28868651 | Sensitive | lineage4.3.3 | None | SRR29772432 | Sensitive | lineage1.1.2 | None | ERR8975347 | Sensitive | lineage4.2.2.2 | None | ERR4276882 | MDR-TB | lineage4.2.2.2 | None | SRR29681359 | Sensitive | lineage4.8 | None | ERR9124919 | Sensitive | lineage4.8 | None | SRR14520060 | Sensitive | lineage3 | None | SRR28044532 | Sensitive | lineage3 | None | SRR28044496 | Sensitive | lineage3 | None | ERR3257974 | Sensitive | lineage4.4.1.1 | fr | ERR8665907 | Pre-XDR-TB | lineage2.2.1 | None |
---|