Rv1979c - c.1052dupT
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
80 Sensitive
2 RR-TB
23 HR-TB
141 MDR-TB
24 Pre-XDR-TB
1 XDR-TB
95 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 352 |
| lineage2.2.1;lineage4.3.3 | 5 |
| lineage2.2.1;lineage4.2.1 | 3 |
| lineage2.2.1;lineage4.9 | 2 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| lineage2.2.1;lineage4.3.2.1 | 1 |
| lineage2.2.1;lineage4.2.1.1 | 1 |
| lineage2.2.1;lineage4 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 366 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR14782446 | Other | lineage2.2.1 | None | ERR13290452 | MDR-TB | lineage2.2.1 | None | SRR10379930 | Other | lineage2.2.1 | None | SRR24710259 | Pre-XDR-TB | lineage2.2.1 | None | SRR6785246 | Sensitive | lineage2.2.1 | None | ERR4827567 | MDR-TB | lineage2.2.1 | None | ERR4827877 | Other | lineage2.2.1 | None | ERR13284941 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR11080959 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR24709893 | MDR-TB | lineage2.2.1 | None | ERR13285157 | MDR-TB | lineage2.2.1 | None | SRR14801309 | Sensitive | lineage2.2.1 | None | SRR14801477 | Other | lineage2.2.1 | None | SRR14801573 | Sensitive | lineage2.2.1 | None | SRR14801876 | MDR-TB | lineage2.2.1 | None | SRR14802127 | Other | lineage2.2.1 | None | SRR14801328 | Sensitive | lineage2.2.1 | None | ERR10762284 | MDR-TB | lineage2.2.1 | None | ERR13284751 | MDR-TB | lineage2.2.1 | None | SRR14801906 | Other | lineage2.2.1 | None | SRR611020 | Pre-XDR-TB | lineage2.2.1 | None | ERR13290453 | MDR-TB | lineage2.2.1 | None | ERR11082174 | MDR-TB | lineage2.2.1 | None | ERR5865487 | MDR-TB | lineage2.2.1 | None | ERR13276266 | MDR-TB | lineage2.2.1 | None | ERR13276077 | Sensitive | lineage2.2.1 | None | SRR13232423 | MDR-TB | lineage2.2.1 | None | ERR11068940 | HR-TB | lineage2.2.1 | None | SRR14782479 | Other | lineage2.2.1 | None | ERR13284404 | MDR-TB | lineage2.2.1 | None | SRR23861943 | HR-TB | lineage2.2.1 | None | SRR28706464 | HR-TB | lineage2.2.1 | None | SRR28706519 | HR-TB | lineage2.2.1 | None | SRR14782495 | Other | lineage2.2.1 | None | SRR14781877 | Sensitive | lineage2.2.1 | None | SRR14782367 | Other | lineage2.2.1 | None | SRR14802185 | Other | lineage2.2.1 | None | SRR16087902 | XDR-TB | lineage2.2.1 | None | ERR5865669 | Pre-XDR-TB | lineage2.2.1 | None | SRR6484976 | Other | lineage2.2.1 | None | SRR28498436 | Other | lineage2.2.1 | None | ERR4827545 | HR-TB | lineage2.2.1 | None | SRR6485118 | Sensitive | lineage2.2.1 | None | SRR10303334 | Pre-XDR-TB | lineage2.2.1 | None | SRR14807537 | Other | lineage2.2.1 | None | SRR7645899 | Other | lineage2.2.1 | None | SRR7645906 | Other | lineage2.2.1 | None | ERR13275994 | Sensitive | lineage2.2.1 | None | ERR4195652 | MDR-TB | lineage2.2.1 | None | SRR6832602 | Sensitive | lineage2.2.1 | None | SRR14782436 | Sensitive | lineage2.2.1 | None | SRR1163490 | MDR-TB | lineage2.2.1 | None | SRR14782010 | Other | lineage2.2.1 | None | SRR14801826 | Sensitive | lineage2.2.1 | None | SRR29681357 | MDR-TB | lineage2.2.1 | None | ERR13285737 | MDR-TB | lineage2.2.1 | None | SRR14782151 | Other | lineage2.2.1 | None | SRR29341514 | Other | lineage2.2.1 | None | ERR13284996 | MDR-TB | lineage2.2.1 | None | SRR6785318 | Sensitive | lineage2.2.1 | None | ERR551767 | MDR-TB | lineage2.2.1 | None | SRR14801894 | Other | lineage2.2.1 | None | SRR10380174 | Sensitive | lineage2.2.1 | None | SRR23938669 | Pre-XDR-TB | lineage2.2.1 | None | SRR24709977 | MDR-TB | lineage2.2.1 | None | SRR14782148 | Other | lineage2.2.1 | None | SRR7645969 | Sensitive | lineage2.2.1 | None | SRR14807566 | Other | lineage2.2.1 | None | SRR10380064 | Other | lineage2.2.1 | None | SRR23938699 | HR-TB | lineage2.2.1 | None | SRR14802176 | Other | lineage2.2.1 | None | SRR14807624 | MDR-TB | lineage2.2.1 | None | ERR4822396 | HR-TB | lineage2.2.1 | kg | ERR4830053 | MDR-TB | lineage2.2.1 | None | ERR019572 | HR-TB | lineage2.2.1 | ru | SRR16088061 | Sensitive | lineage2.2.1 | None | ERR13284907 | MDR-TB | lineage2.2.1 | None | SRR14807585 | Sensitive | lineage2.2.1 | None | SRR21736952 | Sensitive | lineage2.2.1 | None | ERR13273214 | Sensitive | lineage2.2.1 | None | SRR14807620 | Other | lineage2.2.1 | None | SRR24710086 | Sensitive | lineage2.2.1 | None | ERR2600400 | Other | lineage2.2.1 | None | SAMN02414919 | MDR-TB | lineage2.2.1 | se | SRR1169026 | Other | lineage2.2.1;lineage4.3.3 | None | SRR3743436 | Other | lineage2.2.1 | None | SRR28706445 | MDR-TB | lineage2.2.1 | None | SRR28706633 | MDR-TB | lineage2.2.1 | None | SRR28706516 | MDR-TB | lineage2.2.1 | None | SRR24222953 | Pre-XDR-TB | lineage2.2.1 | None | SRR28706688 | MDR-TB | lineage2.2.1 | None | SRR28351647 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR7645971 | Other | lineage2.2.1 | None | SRR28706580 | MDR-TB | lineage2.2.1 | None | SRR10303348 | MDR-TB | lineage2.2.1 | None | ERR4829716 | HR-TB | lineage2.2.1 | it | ERR1023403 | MDR-TB | lineage2.2.1 | None | SRR24709905 | MDR-TB | lineage2.2.1 | None | SRR23310990 | Other | lineage2.2.1 | None | SRR23311028 | Other | lineage2.2.1 | None | ERR552486 | MDR-TB | lineage2.2.1;lineage4.9 | None | SRR1169066 | Other | lineage2.2.1 | None | SRR14782328 | Other | lineage2.2.1 | None | SRR14782389 | Other | lineage2.2.1 | None | SRR14782453 | Other | lineage2.2.1;lineage4.1.2.1 | None | SRR14782584 | Other | lineage2.2.1 | None | SRR14782676 | HR-TB | lineage2.2.1 | None | SRR14782788 | Other | lineage2.2.1 | None | SRR21689459 | Sensitive | lineage2.2.1 | None | ERR550628 | Sensitive | lineage2.2.1 | de | SAMEA2534179 | MDR-TB | lineage2.2.1 | uz | ERR2516245 | MDR-TB | lineage2.2.1 | be | ERR4819157 | Other | lineage2.2.1 | gb | ERR067582 | HR-TB | lineage2.2.1 | ru | SRR14801306 | Sensitive | lineage2.2.1 | None | SRR14801353 | Other | lineage2.2.1 | None | SRR10430398 | MDR-TB | lineage2.2.1 | None | SRR28498444 | Other | lineage2.2.1 | None | SRR6785449 | Sensitive | lineage2.2.1 | None | SRR6831709 | HR-TB | lineage2.2.1 | None | SRR7645883 | Sensitive | lineage2.2.1 | None | ERR13285182 | MDR-TB | lineage2.2.1 | None | ERR11082611 | MDR-TB | lineage2.2.1 | None | SRR24710005 | MDR-TB | lineage2.2.1 | None | SRR28351630 | Pre-XDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR6384966 | MDR-TB | lineage2.2.1 | None | SRR6484831 | Sensitive | lineage2.2.1 | None | ERR13284965 | MDR-TB | lineage2.2.1 | None | SRR29356653 | Other | lineage2.2.1 | None | SRR10430389 | Pre-XDR-TB | lineage2.2.1 | None | SRR24710266 | MDR-TB | lineage2.2.1 | None | SRR14801482 | Sensitive | lineage2.2.1 | None | SRR14781933 | Sensitive | lineage2.2.1 | None | SRR1166186 | Other | lineage2.2.1;lineage4.3.3 | None | SRR1146376 | MDR-TB | lineage2.2.1 | None | SRR10379884 | Other | lineage2.2.1 | None | SRR28351401 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | ERR11798552 | MDR-TB | lineage2.2.1 | None | SRR7645934 | Sensitive | lineage2.2.1 | None | SRR24710142 | HR-TB | lineage2.2.1 | None | ERR4827824 | MDR-TB | lineage2.2.1 | None | ERR5865985 | MDR-TB | lineage2.2.1 | None | SRR24710238 | MDR-TB | lineage2.2.1 | None | SRR14782418 | Sensitive | lineage2.2.1 | None | SRR10430386 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232477 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782554 | Sensitive | lineage2.2.1 | None | SRR7645845 | Sensitive | lineage2.2.1 | None | SRR14801468 | Sensitive | lineage2.2.1 | None | SRR23310822 | Sensitive | lineage2.2.1 | None | ERR5866568 | MDR-TB | lineage2.2.1 | None | SRR1174314 | MDR-TB | lineage2.2.1 | None | SRR24710054 | HR-TB | lineage2.2.1 | None | SRR24710255 | MDR-TB | lineage2.2.1 | None | ERR5865670 | Pre-XDR-TB | lineage2.2.1 | None | SRR24710108 | MDR-TB | lineage2.2.1 | None | ERR8773854 | HR-TB | lineage2.2.1 | None | SRR28351222 | Other | lineage2.2.1 | None | ERR11082475 | MDR-TB | lineage2.2.1 | None | SRR14782608 | Other | lineage2.2.1 | None | SRR28706413 | MDR-TB | lineage2.2.1 | None | ERR9121135 | MDR-TB | lineage2.2.1 | None | SRR14801536 | MDR-TB | lineage2.2.1 | None | SRR14802040 | Other | lineage2.2.1 | None | SRR14802108 | Sensitive | lineage2.2.1 | None | SRR14802198 | Other | lineage2.2.1 | None | SRR610905 | MDR-TB | lineage2.2.1;lineage4.9 | None | SRR23311016 | MDR-TB | lineage2.2.1 | None | ERR11043169 | MDR-TB | lineage2.2.1 | None | SRR14782162 | Other | lineage2.2.1 | None | ERR5865484 | MDR-TB | lineage2.2.1 | None | SRR14782707 | Other | lineage2.2.1 | None | SRR6257061 | MDR-TB | lineage2.2.1 | None | SRR14801939 | Sensitive | lineage2.2.1 | None | SRR28498584 | MDR-TB | lineage2.2.1 | None | ERR9119685 | Sensitive | lineage2.2.1 | None | SRR6832502 | MDR-TB | lineage2.2.1 | None | SRR24828610 | MDR-TB | lineage2.2.1 | None | SRR24222922 | Other | lineage2.2.1 | None | ERR13284577 | MDR-TB | lineage2.2.1 | None | SRR14782445 | Other | lineage2.2.1 | None | ERR11050423 | Sensitive | lineage2.2.1 | None | SRR6484840 | MDR-TB | lineage2.2.1 | None | SRR23938680 | MDR-TB | lineage2.2.1 | None | ERR10762252 | MDR-TB | lineage2.2.1 | None | SRR14801331 | Sensitive | lineage2.2.1 | None | SRR16088409 | MDR-TB | lineage2.2.1 | None | SRR14801348 | Sensitive | lineage2.2.1 | None | ERR13284658 | MDR-TB | lineage2.2.1 | None | SRR7645793 | Other | lineage2.2.1 | None | SRR7657746 | MDR-TB | lineage2.2.1 | None | SRR24710224 | MDR-TB | lineage2.2.1 | None | SRR29539529 | MDR-TB | lineage2.2.1 | None | SRR7516418 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR13276003 | Sensitive | lineage2.2.1 | None | ERR550823 | MDR-TB | lineage2.2.1 | None | ERR13284957 | MDR-TB | lineage2.2.1 | None | ERR13093870 | Other | lineage2.2.1 | None | ERR13284311 | MDR-TB | lineage2.2.1 | None | SRR1173695 | MDR-TB | lineage2.2.1 | None | ERR11043235 | MDR-TB | lineage2.2.1 | None | ERR13290450 | MDR-TB | lineage2.2.1 | None | SRR5153900 | Sensitive | lineage2.2.1 | None | SRR29539535 | Pre-XDR-TB | lineage2.2.1 | None | SRR28351405 | Other | lineage2.2.1 | None | SRR24709932 | MDR-TB | lineage2.2.1 | None | SRR6785331 | Sensitive | lineage2.2.1 | None | SRR23938624 | MDR-TB | lineage2.2.1 | None | SRR29539601 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782027 | Other | lineage2.2.1 | None | ERR13290451 | MDR-TB | lineage2.2.1 | None | SRR10380065 | Other | lineage2.2.1 | None | SRR6832738 | Sensitive | lineage2.2.1 | None | SRR14801630 | Other | lineage2.2.1 | None | SRR14802214 | Other | lineage2.2.1 | None | SRR14807608 | Other | lineage2.2.1 | None | SRR14781923 | Other | lineage2.2.1 | None | ERR551767_ERR551768 | MDR-TB | lineage2.2.1 | None | ERR11081454 | MDR-TB | lineage2.2.1 | None | ERR551768 | MDR-TB | lineage2.2.1 | None | ERR11049137 | MDR-TB | lineage2.2.1 | None | SRR14801656 | Sensitive | lineage2.2.1 | None | ERR13284111 | MDR-TB | lineage2.2.1 | None | ERR11465160 | RR-TB | lineage2.2.1;lineage4.3.2.1 | None | SRR14807503 | Other | lineage2.2.1 | None | SRR22351875 | Pre-XDR-TB | lineage2.2.1 | None | SRR29538987 | Sensitive | lineage2.2.1 | None | SRR14802156 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645877 | Other | lineage2.2.1 | None | SRR10380100 | Other | lineage2.2.1 | None | ERR11049277 | MDR-TB | lineage2.2.1 | None | SRR13232425 | Pre-XDR-TB | lineage2.2.1 | None | SRR22351859 | Pre-XDR-TB | lineage2.2.1 | None | SRR28498462 | Sensitive | lineage2.2.1 | None | ERR11082665 | MDR-TB | lineage2.2.1 | None | SRR28706671 | MDR-TB | lineage2.2.1 | None | ERR11081297 | MDR-TB | lineage2.2.1 | None | SRR29539253 | Other | lineage2.2.1 | None | ERR13276094 | Sensitive | lineage2.2.1 | None | ERR5865486 | MDR-TB | lineage2.2.1 | None | SRR14807570 | MDR-TB | lineage2.2.1 | None | ERR234645 | HR-TB | lineage2.2.1 | ru | SRR19304092 | Other | lineage2.2.1 | None | ERR13273279 | MDR-TB | lineage2.2.1;lineage4.2.1.1 | None | ERR11081566 | MDR-TB | lineage2.2.1 | None | SRR28498513 | Other | lineage2.2.1 | None | ERR4830028 | Sensitive | lineage2.2.1 | None | ERR11082106 | MDR-TB | lineage2.2.1 | None | SRR1144798 | MDR-TB | lineage2.2.1 | None | SRR14782708 | Other | lineage2.2.1 | None | SRR23311068 | Sensitive | lineage2.2.1 | None | SRR24710208 | MDR-TB | lineage2.2.1 | None | SRR24256370 | Sensitive | lineage2.2.1 | None | SRR10380191 | Other | lineage2.2.1 | None | SRR24710014 | Pre-XDR-TB | lineage2.2.1 | None | SRR24710176 | MDR-TB | lineage2.2.1 | None | SRR28706559 | MDR-TB | lineage2.2.1 | None | ERR4830180 | RR-TB | lineage2.2.1 | None | ERR11069085 | MDR-TB | lineage2.2.1 | None | SRR14801864 | Other | lineage2.2.1 | None | SAMN02628489 | MDR-TB | lineage2.2.1 | ir | SRR14802034 | Other | lineage2.2.1 | None | SAMN02584607 | Other | lineage2.2.1 | md | SRR14801710 | Other | lineage2.2.1 | None | SRR14782238 | Sensitive | lineage2.2.1 | None | SRR14802240 | Other | lineage2.2.1 | None | SRR16087888 | Pre-XDR-TB | lineage2.2.1 | None | SRR28706615 | Sensitive | lineage2.2.1 | None | SRR28498663 | Other | lineage2.2.1 | None | SRR28706478 | MDR-TB | lineage2.2.1 | None | SRR28498461 | Sensitive | lineage2.2.1 | None | SRR28351423 | MDR-TB | lineage2.2.1 | None | SRR28498531 | Other | lineage2.2.1 | None | SRR28239431 | Other | lineage2.2.1 | None | ERR7910951 | MDR-TB | lineage2.2.1 | md | SRR28706628 | Pre-XDR-TB | lineage2.2.1 | None | SRR23340093 | MDR-TB | lineage2.2.1 | None | SRR28706593 | MDR-TB | lineage2.2.1 | None | ERR7910933 | MDR-TB | lineage2.2.1 | md | ERR7911056 | Sensitive | lineage2.2.1;lineage4 | md | ERR4830608 | MDR-TB | lineage2.2.1 | tm | SRR10380203 | Sensitive | lineage2.2.1 | None | SRR7645795 | Sensitive | lineage2.2.1 | None | SRR14801315 | Other | lineage2.2.1 | None | SRR14801715 | HR-TB | lineage2.2.1 | None | SRR14801937 | MDR-TB | lineage2.2.1 | None | SRR14801952 | Other | lineage2.2.1 | None | SRR14782334 | Other | lineage2.2.1 | None | SRR24710277 | MDR-TB | lineage2.2.1 | None | SRR10380224 | Sensitive | lineage2.2.1 | None | ERR13276097 | Sensitive | lineage2.2.1 | None | SRR25395611 | Other | lineage2.2.1 | None | SRR28498521 | Other | lineage2.2.1 | None | SRR6785399 | Sensitive | lineage2.2.1 | None | ERR133861 | MDR-TB | lineage2.2.1 | ru | SRR14781949 | Sensitive | lineage2.2.1 | None | ERR11082871 | HR-TB | lineage2.2.1 | None | ERR13273129 | HR-TB | lineage2.2.1 | None | ERR13284113 | MDR-TB | lineage2.2.1 | None | SRR23310824 | MDR-TB | lineage2.2.1 | None | SRR14782192 | Sensitive | lineage2.2.1 | None | SRR14801725 | MDR-TB | lineage2.2.1 | None | ERR11068907 | MDR-TB | lineage2.2.1 | None | ERR4827698 | MDR-TB | lineage2.2.1 | None | SRR24710090 | MDR-TB | lineage2.2.1 | None | SRR14782451 | Sensitive | lineage2.2.1 | None | ERR2677458 | MDR-TB | lineage2.2.1 | de | SRR28498564 | Other | lineage2.2.1 | None | SRR22351865 | Pre-XDR-TB | lineage2.2.1 | None | SRR18714864 | Sensitive | lineage2.2.1 | None | SRR22351867 | HR-TB | lineage2.2.1 | None | SRR16088188 | MDR-TB | lineage2.2.1 | None | ERR4827675 | HR-TB | lineage2.2.1 | None | ERR3639702 | MDR-TB | lineage2.2.1 | None | SRR14801655 | Sensitive | lineage2.2.1 | None | ERR11068916 | MDR-TB | lineage2.2.1 | None | SRR14782124 | Other | lineage2.2.1 | None | ERR1768643 | MDR-TB | lineage2.2.1 | None | SRR14782583 | Other | lineage2.2.1 | None | SRR14782825 | Sensitive | lineage2.2.1 | None | SRR14801455 | Sensitive | lineage2.2.1 | None | SRR14782294 | Other | lineage2.2.1 | None | SRR14782366 | Other | lineage2.2.1 | None | SRR14782521 | Sensitive | lineage2.2.1 | None | SRR10303345 | MDR-TB | lineage2.2.1 | None | SRR22351863 | MDR-TB | lineage2.2.1 | None | ERR11050984 | Sensitive | lineage2.2.1 | None | SRR6485112 | Pre-XDR-TB | lineage2.2.1 | None | SRR6485083 | Sensitive | lineage2.2.1 | None | SRR14802028 | Sensitive | lineage2.2.1 | None | ERR11081330 | MDR-TB | lineage2.2.1 | None | SRR23310946 | Other | lineage2.2.1 | None | ERR11082923 | MDR-TB | lineage2.2.1 | None | SRR24710155 | MDR-TB | lineage2.2.1 | None | SRR6831860 | Sensitive | lineage2.2.1 | None | SRR14782571 | Sensitive | lineage2.2.1 | None | SRR6485128 | Sensitive | lineage2.2.1 | None | SRR14802180 | Other | lineage2.2.1 | None | SRR14782644 | Sensitive | lineage2.2.1 | None | ERR11081119 | MDR-TB | lineage2.2.1 | None | SRR13232634 | MDR-TB | lineage2.2.1 | None | SRR10380190 | Other | lineage2.2.1 | None | ERR13276108 | Sensitive | lineage2.2.1 | None | SRR14801820 | Other | lineage2.2.1 | None | SRR1163094 | MDR-TB | lineage2.2.1 | None | ERR5865485 | MDR-TB | lineage2.2.1 | None | SRR10430355 | MDR-TB | lineage2.2.1 | None | SRR14782682 | Other | lineage2.2.1 | None | SRR14782169 | Other | lineage2.2.1 | None | ERR8773856 | HR-TB | lineage2.2.1 | None | SRR14801441 | Sensitive | lineage2.2.1 | None | SRR24710025 | Other | lineage2.2.1 | None | SRR14807637 | MDR-TB | lineage2.2.1 | None | SRR13180209 | MDR-TB | lineage2.2.1 | None | SRR22424896 | HR-TB | lineage2.2.1 | None | SRR14801447 | Sensitive | lineage2.2.1 | None | SRR1166155 | Other | lineage2.2.1 | None | SRR14781873 | Other | lineage2.2.1 | None | SRR14782742 | Sensitive | lineage2.2.1 | None | SRR14782756 | Sensitive | lineage2.2.1 | None | SRR14801338 | Other | lineage2.2.1 | None | SRR14801379 | Sensitive | lineage2.2.1 | None | ERR13285821 | MDR-TB | lineage2.2.1 | None | SRR24710034 | MDR-TB | lineage2.2.1 | None | SRR13232398 | MDR-TB | lineage2.2.1 | None | SRR29356649 | Pre-XDR-TB | lineage2.2.1 | None |
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