Rv1979c - c.1052dupT


Drug resistance types
80 Sensitive 2 RR-TB 23 HR-TB 140 MDR-TB 24 Pre-XDR-TB 1 XDR-TB 95 Other
lineage Counts
lineage Count
lineage2.2.1 351
lineage2.2.1;lineage4.2.1 3
lineage2.2.1;lineage4 1
lineage2.2.1;lineage4.3.3 5
lineage2.2.1;lineage4.3.2.1 1
lineage2.2.1;lineage4.1.2.1 1
lineage2.2.1;lineage4.9 2
lineage2.2.1;lineage4.2.1.1 1
spoligotype Counts
spoligotype Count
None 365
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
ID Drug resistance Lineage Country iso2
SRR28706688 MDR-TB lineage2.2.1 None
SRR28351647 MDR-TB lineage2.2.1;lineage4.2.1 None
SRR7645971 Other lineage2.2.1 None
SRR28706628 Pre-XDR-TB lineage2.2.1 None
SRR10303348 MDR-TB lineage2.2.1 None
ERR7910933 MDR-TB lineage2.2.1 md
ERR7911056 Sensitive lineage2.2.1;lineage4 md
ERR4829716 HR-TB lineage2.2.1 it
ERR4819157 Other lineage2.2.1 gb
SRR24710277 MDR-TB lineage2.2.1 None
SRR28498444 Other lineage2.2.1 None
ERR13276097 Sensitive lineage2.2.1 None
SRR25395611 Other lineage2.2.1 None
SRR24710005 MDR-TB lineage2.2.1 None
SRR6484831 Sensitive lineage2.2.1 None
SRR6785399 Sensitive lineage2.2.1 None
ERR13284965 MDR-TB lineage2.2.1 None
ERR13284113 MDR-TB lineage2.2.1 None
SRR29356653 Other lineage2.2.1 None
SRR24710090 MDR-TB lineage2.2.1 None
SRR14782451 Sensitive lineage2.2.1 None
SRR24710266 MDR-TB lineage2.2.1 None
SRR14801482 Sensitive lineage2.2.1 None
SRR14781933 Sensitive lineage2.2.1 None
SRR28498564 Other lineage2.2.1 None
SRR22351865 Pre-XDR-TB lineage2.2.1 None
SRR1146376 MDR-TB lineage2.2.1 None
SRR22351867 HR-TB lineage2.2.1 None
SRR10379884 Other lineage2.2.1 None
SRR28351401 MDR-TB lineage2.2.1;lineage4.2.1 None
SAMN02628489 MDR-TB lineage2.2.1 ir
ERR3639702 MDR-TB lineage2.2.1 None
ERR11068916 MDR-TB lineage2.2.1 None
SRR10430386 Pre-XDR-TB lineage2.2.1 None
SRR13232477 Pre-XDR-TB lineage2.2.1 None
SRR14782825 Sensitive lineage2.2.1 None
SRR14782294 Other lineage2.2.1 None
SRR14782366 Other lineage2.2.1 None
SRR10303345 MDR-TB lineage2.2.1 None
ERR5866568 MDR-TB lineage2.2.1 None
SRR1174314 MDR-TB lineage2.2.1 None
SRR24710108 MDR-TB lineage2.2.1 None
ERR8773854 HR-TB lineage2.2.1 None
SRR28351222 Other lineage2.2.1 None
SRR14782608 Other lineage2.2.1 None
SRR6257061 MDR-TB lineage2.2.1 None
SRR24710155 MDR-TB lineage2.2.1 None
SRR28498584 MDR-TB lineage2.2.1 None
SRR14802180 Other lineage2.2.1 None
ERR11081119 MDR-TB lineage2.2.1 None
SRR13232634 MDR-TB lineage2.2.1 None
SRR10380190 Other lineage2.2.1 None
SRR14801820 Other lineage2.2.1 None
SRR6484840 MDR-TB lineage2.2.1 None
ERR5865485 MDR-TB lineage2.2.1 None
SRR24710224 MDR-TB lineage2.2.1 None
SRR14782169 Other lineage2.2.1 None
SRR29539529 MDR-TB lineage2.2.1 None
ERR8773856 HR-TB lineage2.2.1 None
SRR14801441 Sensitive lineage2.2.1 None
SRR24710025 Other lineage2.2.1 None
ERR550823 MDR-TB lineage2.2.1 None
SRR13180209 MDR-TB lineage2.2.1 None
SRR22424896 HR-TB lineage2.2.1 None
ERR13284957 MDR-TB lineage2.2.1 None
ERR13093870 Other lineage2.2.1 None
SRR1173695 MDR-TB lineage2.2.1 None
ERR11043235 MDR-TB lineage2.2.1 None
ERR13290450 MDR-TB lineage2.2.1 None
SRR14782742 Sensitive lineage2.2.1 None
SRR14782756 Sensitive lineage2.2.1 None
SRR14801338 Other lineage2.2.1 None
SRR14801379 Sensitive lineage2.2.1 None
SRR6785331 Sensitive lineage2.2.1 None
ERR13285821 MDR-TB lineage2.2.1 None
SRR29356649 Pre-XDR-TB lineage2.2.1 None
ERR4830180 RR-TB lineage2.2.1 None
SRR6785246 Sensitive lineage2.2.1 None
ERR4827877 Other lineage2.2.1 None
SRR10380065 Other lineage2.2.1 None
SRR6832738 Sensitive lineage2.2.1 None
SRR14802214 Other lineage2.2.1 None
ERR11080959 MDR-TB lineage2.2.1;lineage4.3.3 None
SAMN02584607 Other lineage2.2.1 md
SRR14781923 Other lineage2.2.1 None
SRR14801309 Sensitive lineage2.2.1 None
SRR14801477 Other lineage2.2.1 None
ERR10762284 MDR-TB lineage2.2.1 None
ERR11081454 MDR-TB lineage2.2.1 None
ERR551768 MDR-TB lineage2.2.1 None
SRR611020 Pre-XDR-TB lineage2.2.1 None
ERR13290453 MDR-TB lineage2.2.1 None
ERR5865487 MDR-TB lineage2.2.1 None
ERR13276077 Sensitive lineage2.2.1 None
SRR13232423 MDR-TB lineage2.2.1 None
SRR14801656 Sensitive lineage2.2.1 None
ERR11465160 RR-TB lineage2.2.1;lineage4.3.2.1 None
ERR133861 MDR-TB lineage2.2.1 ru
SRR22351875 Pre-XDR-TB lineage2.2.1 None
SRR29538987 Sensitive lineage2.2.1 None
SRR14802185 Other lineage2.2.1 None
SRR28498436 Other lineage2.2.1 None
SRR6832602 Sensitive lineage2.2.1 None
SRR14782436 Sensitive lineage2.2.1 None
SRR1163490 MDR-TB lineage2.2.1 None
SRR13232425 Pre-XDR-TB lineage2.2.1 None
SRR29681357 MDR-TB lineage2.2.1 None
SRR28706671 MDR-TB lineage2.2.1 None
SRR14801894 Other lineage2.2.1 None
SRR10380174 Sensitive lineage2.2.1 None
SRR24709977 MDR-TB lineage2.2.1 None
SRR7645969 Sensitive lineage2.2.1 None
SRR19304092 Other lineage2.2.1 None
SRR28498513 Other lineage2.2.1 None
ERR11082106 MDR-TB lineage2.2.1 None
ERR019572 HR-TB lineage2.2.1 ru
ERR13284907 MDR-TB lineage2.2.1 None
SRR14807585 Sensitive lineage2.2.1 None
SRR21736952 Sensitive lineage2.2.1 None
ERR13273214 Sensitive lineage2.2.1 None
ERR4830608 MDR-TB lineage2.2.1 tm
SRR24710176 MDR-TB lineage2.2.1 None
SRR14802240 Other lineage2.2.1 None
ERR067582 HR-TB lineage2.2.1 ru
SRR16087888 Pre-XDR-TB lineage2.2.1 None
SRR28706615 Sensitive lineage2.2.1 None
SRR24222953 Pre-XDR-TB lineage2.2.1 None
SRR28498663 Other lineage2.2.1 None
SRR28706478 MDR-TB lineage2.2.1 None
SRR28498461 Sensitive lineage2.2.1 None
SRR28706580 MDR-TB lineage2.2.1 None
ERR7910951 MDR-TB lineage2.2.1 md
SRR23340093 MDR-TB lineage2.2.1 None
ERR1023403 MDR-TB lineage2.2.1 None
SRR7645795 Sensitive lineage2.2.1 None
SRR14782328 Other lineage2.2.1 None
SRR14782389 Other lineage2.2.1 None
SRR14782453 Other lineage2.2.1;lineage4.1.2.1 None
SRR14782584 Other lineage2.2.1 None
SRR14782676 HR-TB lineage2.2.1 None
SRR21689459 Sensitive lineage2.2.1 None
SAMEA2534179 MDR-TB lineage2.2.1 uz
ERR2516245 MDR-TB lineage2.2.1 be
SRR6831709 HR-TB lineage2.2.1 None
ERR13285182 MDR-TB lineage2.2.1 None
ERR11082611 MDR-TB lineage2.2.1 None
SRR28351630 Pre-XDR-TB lineage2.2.1;lineage4.2.1 None
SRR14781949 Sensitive lineage2.2.1 None
ERR11082871 HR-TB lineage2.2.1 None
ERR13273129 HR-TB lineage2.2.1 None
SRR10430389 Pre-XDR-TB lineage2.2.1 None
SRR23310824 MDR-TB lineage2.2.1 None
ERR11068907 MDR-TB lineage2.2.1 None
SRR7645906 Other lineage2.2.1 None
ERR11798552 MDR-TB lineage2.2.1 None
ERR2677458 MDR-TB lineage2.2.1 de
SRR7645934 Sensitive lineage2.2.1 None
SRR24710142 HR-TB lineage2.2.1 None
ERR4827824 MDR-TB lineage2.2.1 None
ERR5865985 MDR-TB lineage2.2.1 None
SRR24710238 MDR-TB lineage2.2.1 None
SRR14782418 Sensitive lineage2.2.1 None
SRR16088188 MDR-TB lineage2.2.1 None
SRR14801655 Sensitive lineage2.2.1 None
SRR14782554 Sensitive lineage2.2.1 None
ERR1768643 MDR-TB lineage2.2.1 None
SRR14782583 Other lineage2.2.1 None
SRR14782521 Sensitive lineage2.2.1 None
ERR11050984 Sensitive lineage2.2.1 None
SRR23310822 Sensitive lineage2.2.1 None
SRR24710255 MDR-TB lineage2.2.1 None
ERR5865670 Pre-XDR-TB lineage2.2.1 None
ERR11082475 MDR-TB lineage2.2.1 None
SRR28706413 MDR-TB lineage2.2.1 None
ERR9121135 MDR-TB lineage2.2.1 None
SRR14802108 Sensitive lineage2.2.1 None
SRR14802198 Other lineage2.2.1 None
SRR610905 MDR-TB lineage2.2.1;lineage4.9 None
SRR23311016 MDR-TB lineage2.2.1 None
ERR11043169 MDR-TB lineage2.2.1 None
SRR14782162 Other lineage2.2.1 None
SRR7645899 Other lineage2.2.1 None
SRR6485083 Sensitive lineage2.2.1 None
SRR14802028 Sensitive lineage2.2.1 None
SRR14782707 Other lineage2.2.1 None
ERR11082923 MDR-TB lineage2.2.1 None
SRR14782571 Sensitive lineage2.2.1 None
SRR6485128 Sensitive lineage2.2.1 None
SRR6832502 MDR-TB lineage2.2.1 None
SRR24828610 MDR-TB lineage2.2.1 None
SRR14782644 Sensitive lineage2.2.1 None
SRR24222922 Other lineage2.2.1 None
ERR13284577 MDR-TB lineage2.2.1 None
SRR14782445 Other lineage2.2.1 None
ERR13276108 Sensitive lineage2.2.1 None
SRR23938680 MDR-TB lineage2.2.1 None
SRR14801331 Sensitive lineage2.2.1 None
SRR1163094 MDR-TB lineage2.2.1 None
ERR13284658 MDR-TB lineage2.2.1 None
SRR7645793 Other lineage2.2.1 None
SRR7657746 MDR-TB lineage2.2.1 None
SRR7516418 Pre-XDR-TB lineage2.2.1;lineage4.3.3 None
ERR13276003 Sensitive lineage2.2.1 None
SRR14781873 Other lineage2.2.1 None
SRR29539535 Pre-XDR-TB lineage2.2.1 None
SRR28351405 Other lineage2.2.1 None
SRR24709932 MDR-TB lineage2.2.1 None
SRR23938624 MDR-TB lineage2.2.1 None
SRR13232398 MDR-TB lineage2.2.1 None
SRR10379930 Other lineage2.2.1 None
SRR24710259 Pre-XDR-TB lineage2.2.1 None
ERR13284941 MDR-TB lineage2.2.1;lineage4.3.3 None
SRR14801573 Sensitive lineage2.2.1 None
SRR14801876 MDR-TB lineage2.2.1 None
SRR14801328 Sensitive lineage2.2.1 None
ERR13276266 MDR-TB lineage2.2.1 None
ERR13284111 MDR-TB lineage2.2.1 None
SRR14782495 Other lineage2.2.1 None
SRR14781877 Sensitive lineage2.2.1 None
SRR14802156 Pre-XDR-TB lineage2.2.1 None
SRR14782367 Other lineage2.2.1 None
SRR6484976 Other lineage2.2.1 None
SRR14807537 Other lineage2.2.1 None
SRR10380100 Other lineage2.2.1 None
ERR4195652 MDR-TB lineage2.2.1 None
SRR14801826 Sensitive lineage2.2.1 None
SRR28498462 Sensitive lineage2.2.1 None
ERR11082665 MDR-TB lineage2.2.1 None
ERR11081297 MDR-TB lineage2.2.1 None
SRR14782151 Other lineage2.2.1 None
ERR13284996 MDR-TB lineage2.2.1 None
ERR13276094 Sensitive lineage2.2.1 None
ERR5865486 MDR-TB lineage2.2.1 None
SRR6785318 Sensitive lineage2.2.1 None
ERR551767 MDR-TB lineage2.2.1 None
SRR14807570 MDR-TB lineage2.2.1 None
SRR14807566 Other lineage2.2.1 None
ERR11081566 MDR-TB lineage2.2.1 None
SRR10380064 Other lineage2.2.1 None
SRR1144798 MDR-TB lineage2.2.1 None
SRR16088061 Sensitive lineage2.2.1 None
SRR23311068 Sensitive lineage2.2.1 None
SRR24256370 Sensitive lineage2.2.1 None
SRR24710086 Sensitive lineage2.2.1 None
SRR10380191 Other lineage2.2.1 None
SRR24710014 Pre-XDR-TB lineage2.2.1 None
ERR2600400 Other lineage2.2.1 None
ERR11069085 MDR-TB lineage2.2.1 None
SRR14801864 Other lineage2.2.1 None
SRR14801710 Other lineage2.2.1 None
SRR28706445 MDR-TB lineage2.2.1 None
SRR28706516 MDR-TB lineage2.2.1 None
SRR28351423 MDR-TB lineage2.2.1 None
SRR28498531 Other lineage2.2.1 None
SRR28239431 Other lineage2.2.1 None
SRR28706593 MDR-TB lineage2.2.1 None
SRR10380203 Sensitive lineage2.2.1 None
SRR24709905 MDR-TB lineage2.2.1 None
SRR23310990 Other lineage2.2.1 None
SRR23311028 Other lineage2.2.1 None
ERR552486 MDR-TB lineage2.2.1;lineage4.9 None
SRR1169066 Other lineage2.2.1 None
SRR14782788 Other lineage2.2.1 None
SRR14801315 Other lineage2.2.1 None
SRR14801715 HR-TB lineage2.2.1 None
ERR550628 Sensitive lineage2.2.1 de
SRR14801306 Sensitive lineage2.2.1 None
SRR14801353 Other lineage2.2.1 None
SRR14801937 MDR-TB lineage2.2.1 None
SRR14801952 Other lineage2.2.1 None
SRR10430398 MDR-TB lineage2.2.1 None
SRR14782334 Other lineage2.2.1 None
SRR6785449 Sensitive lineage2.2.1 None
SRR7645883 Sensitive lineage2.2.1 None
SRR10380224 Sensitive lineage2.2.1 None
SRR28498521 Other lineage2.2.1 None
SRR6384966 MDR-TB lineage2.2.1 None
SRR14782192 Sensitive lineage2.2.1 None
SRR14801725 MDR-TB lineage2.2.1 None
ERR4827698 MDR-TB lineage2.2.1 None
SRR1166186 Other lineage2.2.1;lineage4.3.3 None
SRR18714864 Sensitive lineage2.2.1 None
ERR4827675 HR-TB lineage2.2.1 None
SRR14782124 Other lineage2.2.1 None
SRR14801455 Sensitive lineage2.2.1 None
SRR7645845 Sensitive lineage2.2.1 None
SRR14801468 Sensitive lineage2.2.1 None
SRR22351863 MDR-TB lineage2.2.1 None
ERR4830028 Sensitive lineage2.2.1 None
SRR6485112 Pre-XDR-TB lineage2.2.1 None
SRR24710054 HR-TB lineage2.2.1 None
SRR14801536 MDR-TB lineage2.2.1 None
SRR14802040 Other lineage2.2.1 None
ERR5865484 MDR-TB lineage2.2.1 None
ERR11081330 MDR-TB lineage2.2.1 None
SRR23310946 Other lineage2.2.1 None
SRR14801939 Sensitive lineage2.2.1 None
ERR9119685 Sensitive lineage2.2.1 None
SRR6831860 Sensitive lineage2.2.1 None
ERR4822396 HR-TB lineage2.2.1 kg
ERR11050423 Sensitive lineage2.2.1 None
ERR10762252 MDR-TB lineage2.2.1 None
SRR16088409 MDR-TB lineage2.2.1 None
SRR10430355 MDR-TB lineage2.2.1 None
SRR14782682 Other lineage2.2.1 None
SRR14801348 Sensitive lineage2.2.1 None
SRR14807637 MDR-TB lineage2.2.1 None
SRR14801447 Sensitive lineage2.2.1 None
ERR13284311 MDR-TB lineage2.2.1 None
SRR1166155 Other lineage2.2.1 None
SRR5153900 Sensitive lineage2.2.1 None
SRR24710034 MDR-TB lineage2.2.1 None
SRR29539601 Pre-XDR-TB lineage2.2.1 None
SRR14782027 Other lineage2.2.1 None
ERR13290451 MDR-TB lineage2.2.1 None
SRR14782446 Other lineage2.2.1 None
ERR13290452 MDR-TB lineage2.2.1 None
ERR4827567 MDR-TB lineage2.2.1 None
SRR14801630 Other lineage2.2.1 None
SRR14807608 Other lineage2.2.1 None
SRR24709893 MDR-TB lineage2.2.1 None
ERR13285157 MDR-TB lineage2.2.1 None
SRR14802127 Other lineage2.2.1 None
ERR551767_ERR551768 MDR-TB lineage2.2.1 None
ERR13284751 MDR-TB lineage2.2.1 None
SRR14801906 Other lineage2.2.1 None
ERR11082174 MDR-TB lineage2.2.1 None
ERR11049137 MDR-TB lineage2.2.1 None
ERR11068940 HR-TB lineage2.2.1 None
SRR14782479 Other lineage2.2.1 None
ERR13284404 MDR-TB lineage2.2.1 None
SRR23861943 HR-TB lineage2.2.1 None
SRR14807503 Other lineage2.2.1 None
SRR28706464 HR-TB lineage2.2.1 None
SRR28706519 HR-TB lineage2.2.1 None
SRR16087902 XDR-TB lineage2.2.1 None
ERR5865669 Pre-XDR-TB lineage2.2.1 None
ERR4827545 HR-TB lineage2.2.1 None
SRR7645877 Other lineage2.2.1 None
SRR6485118 Sensitive lineage2.2.1 None
SRR10303334 Pre-XDR-TB lineage2.2.1 None
ERR13275994 Sensitive lineage2.2.1 None
SAMN02414919 MDR-TB lineage2.2.1 se
ERR11049277 MDR-TB lineage2.2.1 None
SRR14782010 Other lineage2.2.1 None
SRR22351859 Pre-XDR-TB lineage2.2.1 None
SRR29539253 Other lineage2.2.1 None
ERR13285737 MDR-TB lineage2.2.1 None
SRR29341514 Other lineage2.2.1 None
SRR23938669 Pre-XDR-TB lineage2.2.1 None
ERR234645 HR-TB lineage2.2.1 ru
SRR14782148 Other lineage2.2.1 None
ERR13273279 MDR-TB lineage2.2.1;lineage4.2.1.1 None
SRR23938699 HR-TB lineage2.2.1 None
SRR14802176 Other lineage2.2.1 None
SRR14807624 MDR-TB lineage2.2.1 None
SRR14782708 Other lineage2.2.1 None
SRR24710208 MDR-TB lineage2.2.1 None
SRR14807620 Other lineage2.2.1 None
SRR28706559 MDR-TB lineage2.2.1 None
SRR1169026 Other lineage2.2.1;lineage4.3.3 None
SRR14802034 Other lineage2.2.1 None
SRR14782238 Sensitive lineage2.2.1 None
SRR3743436 Other lineage2.2.1 None
SRR28706633 MDR-TB lineage2.2.1 None