Rv2043c - c.-125delC
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
11842 Sensitive
399 RR-TB
1181 HR-TB
1822 MDR-TB
1089 Pre-XDR-TB
201 XDR-TB
1978 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 12921 |
| lineage3.1.2.1 | 925 |
| lineage3.1.2 | 1325 |
| lineage3.1.1 | 2070 |
| lineage2.2.1.1;lineage3 | 13 |
| lineage3.1.3 | 380 |
| lineage2.2.1;lineage3 | 89 |
| lineage3.1.1;lineage4.3.4.2.1 | 8 |
| lineage3.1 | 264 |
| lineage3.1.2.2 | 116 |
| lineage3.1.1;lineage4.1.2.1 | 1 |
| lineage2.2.1;lineage3.1.2 | 13 |
| lineage1.2.2.2;lineage3 | 10 |
| lineage3;lineage4 | 41 |
| lineage1.1.3.2 | 1 |
| lineage3.1.2.1;lineage4 | 5 |
| lineage3;lineage4.1.2.1 | 6 |
| lineage3;lineage4.2.2.2 | 6 |
| lineage3.1.1;lineage4 | 21 |
| lineage3.1.1;lineage4.9 | 1 |
| lineage3.1.1;lineage4.8 | 1 |
| lineage3;lineage4.4 | 4 |
| lineage2.2.1.1;lineage3.1.2;lineage4.4 | 1 |
| lineage2.2.1.1;lineage3;lineage4.1.1.1 | 1 |
| lineage3.1.2;lineage4 | 3 |
| lineage3;lineage4.6.2.2 | 1 |
| lineage3.1.2;lineage4.3.3 | 3 |
| lineage3;lineage4.2.2 | 1 |
| lineage3;lineage4.8 | 13 |
| lineage3;lineage4.7 | 3 |
| lineage3.1;lineage4.9.1 | 1 |
| lineage1.1.3.1;lineage3 | 4 |
| 5 | |
| lineage3;lineage4.2 | 2 |
| lineage2.2.1;lineage3;lineage4.8 | 2 |
| lineage3;lineage4.2;lineage4.6.1.2 | 1 |
| lineage1.2.2.2;lineage4 | 1 |
| lineage1.2.2.2;lineage3.1.2 | 1 |
| lineage3;lineage4.5 | 4 |
| lineage1.1.2;lineage3.1.1;lineage4.3.4 | 1 |
| lineage4.2.2.2 | 2 |
| lineage3.1.1;lineage4.3.4.2 | 2 |
| lineage3.1.2;lineage4.1.1 | 1 |
| lineage2.2.1.1;lineage3;lineage4 | 2 |
| lineage3.1.2;lineage4.2.2.2;lineage4.3.3 | 1 |
| lineage1.1.3.1;lineage3.1.2 | 1 |
| lineage1.1.2;lineage3 | 18 |
| lineage1.1.2;lineage3.1.2 | 4 |
| lineage2.2.2;lineage3 | 1 |
| lineage2.2.1.2;lineage3 | 5 |
| lineage3.1.3;lineage4 | 4 |
| lineage3.1.1;lineage4.1.1.1 | 1 |
| lineage1.1.3.2;lineage3.1.1 | 3 |
| lineage3.1.1;lineage4.6.3 | 2 |
| lineage3.1.1;lineage4.2.2.2 | 4 |
| lineage2.2.1.1;lineage3.1.2 | 3 |
| lineage3;lineage4.9 | 10 |
| lineage1.1.3.1;lineage3.1 | 1 |
| lineage1.1.2;lineage3.1.1;lineage4 | 2 |
| lineage3.1;lineage4.8 | 2 |
| lineage2.2.1;lineage3.1.1;lineage4.2.2 | 1 |
| lineage3;lineage4.3.4.1 | 1 |
| lineage3.1.2;lineage4.3.4.2.1 | 3 |
| lineage2.2.1;lineage3.1.3 | 1 |
| lineage1.2.2.2;lineage2.2.1;lineage3.1.2;lineage4 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| lineage3.1.1;lineage3.1.3 | 2 |
| lineage3;lineage4.1.1.3 | 7 |
| lineage3.1.2;lineage4.9 | 4 |
| La1.1;lineage3 | 2 |
| lineage1.2.2.2;lineage2.2.1;lineage3 | 2 |
| lineage3.1.1;lineage4.1.1.3 | 2 |
| lineage1.1.3.3;lineage2.2.1;lineage3 | 1 |
| lineage2.2 | 1 |
| lineage3;lineage4.4.1.1 | 8 |
| lineage3.1.2;lineage4.8 | 3 |
| lineage3;lineage4.3.3 | 8 |
| lineage2.2.1;lineage3.1.1;lineage4.2.2.2;lineage4.3.3 | 1 |
| lineage1.1.2;lineage3.1.1 | 7 |
| lineage1.1.3;lineage3 | 1 |
| lineage2.2.1 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8 | 2 |
| lineage1.1.2;lineage3.1.1;lineage4.3;lineage4.6.1.1 | 1 |
| lineage3.1.2.1;lineage4.3.4.2 | 3 |
| lineage3.1.2;lineage4.5 | 1 |
| lineage2.2.1.1;lineage2.2.1.2;lineage3 | 1 |
| lineage2.2;lineage3 | 3 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage3.1.1;lineage4.6.1.1 | 2 |
| lineage3;lineage4.1.1.1 | 3 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2.1 | 1 |
| lineage3;lineage4.1.1.2 | 1 |
| lineage3;lineage4.3.4.2.1 | 3 |
| lineage1.2.2.2;lineage3.1.2.1 | 1 |
| lineage1.2.2;lineage3.1.2 | 1 |
| lineage4.1.2 | 1 |
| lineage2.2.1;lineage3.1.1;lineage4 | 1 |
| lineage1;lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | 2 |
| lineage2.2.1;lineage3;lineage4.2.2.2 | 1 |
| lineage4.1.2.1 | 3 |
| lineage1;lineage3 | 2 |
| lineage3.1.3;lineage4.8.2 | 2 |
| lineage3;lineage4.6.2 | 1 |
| lineage3.1.1;lineage4.3.3 | 7 |
| lineage3.1;lineage9 | 1 |
| lineage2.2.1;lineage3.1.2;lineage4.9 | 1 |
| lineage2.2.1;lineage3;lineage4.1.2;lineage4.2.2;lineage4.9 | 1 |
| lineage3;lineage4.3.4.2 | 3 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage3.1.2;lineage4.1.1.1 | 1 |
| lineage3.1;lineage4 | 1 |
| lineage3.1.2.1;lineage4.1.2 | 1 |
| lineage1.1.2;lineage3.1.1;lineage4.6.1.1 | 2 |
| lineage2.2.1;lineage3.1.2.1 | 5 |
| lineage2;lineage3 | 1 |
| lineage3.1.3;lineage4.1.1.1 | 1 |
| lineage2.2.1.2;lineage3.1.2 | 1 |
| lineage1;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage2.2.1.2;lineage3.1.2.1 | 1 |
| lineage2.2.1;lineage3;lineage4 | 6 |
| lineage4.3.4.2 | 1 |
| lineage1.1;lineage2.2;lineage3.1.1;lineage4.2.2.2;lineage4.3.3 | 1 |
| lineage1.1.2;lineage3.1.2.1 | 1 |
| lineage2.2.1;lineage3;lineage4.3.2 | 1 |
| lineage3;lineage4.1.2 | 1 |
| lineage3.1.2;lineage4.3.2.1 | 2 |
| La3;lineage3 | 2 |
| lineage1.1.2;lineage2.2.1;lineage3 | 2 |
| lineage1.1.3.2;lineage3.1.2 | 1 |
| lineage2.2.1;lineage3;lineage4.1.1.3;lineage4.9 | 1 |
| lineage3.1.3;lineage4.2.1 | 1 |
| La1.7;lineage3 | 1 |
| lineage1.2.2.2;lineage2.2.1;lineage3;lineage4 | 1 |
| lineage3.1;lineage4.9 | 1 |
| lineage3;lineage4.1 | 1 |
| lineage1.1.2 | 1 |
| lineage1.1;lineage3.1.2 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| lineage1.1.3.1;lineage3;lineage4.4.2 | 1 |
| lineage1.2.1.2.1;lineage3 | 1 |
| lineage3;lineage4.4.1.2 | 1 |
| lineage2.2.1;lineage3.1.1 | 1 |
| lineage3.1.1;lineage4.4.1.1.1 | 1 |
| lineage2.2.1;lineage3;lineage4.1.2.1 | 1 |
| lineage3.1;lineage4.2.2 | 1 |
| lineage3;lineage4.3.2.1 | 1 |
| lineage2.2.1;lineage3.1;lineage4.3.4.2.1 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4.6.1 | 1 |
| lineage1.1.2;lineage3.1.1;lineage4.3.4.2.1 | 1 |
| lineage2.2.1;lineage3.1 | 1 |
| lineage3.1.2;lineage4.1.1.3.1 | 1 |
| lineage3.1.1;lineage4.6.1.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4 | 1 |
| lineage1.1.2;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage1.2.1.2;lineage3 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2 | 1 |
| lineage3.1.1;lineage4.3.2.1 | 1 |
| lineage3;lineage4.6.2.1 | 1 |
| lineage1.2.2.2;lineage2.2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 18512 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
This table has 18512 rows and could cause your browser to crash if rendered.
