Rv2043c - c.459_466delCAGGGTGC
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
1 HR-TB
35 MDR-TB
55 Pre-XDR-TB
20 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 109 |
| lineage2.2.1;lineage2.2.2 | 2 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 111 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4831567 | XDR-TB | lineage2.2.1 | None | SRR29096591 | MDR-TB | lineage2.2.1 | None | SRR29096587 | XDR-TB | lineage2.2.1 | None | SRR29096592 | Pre-XDR-TB | lineage2.2.1 | None | SRR29056082 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096306 | MDR-TB | lineage2.2.1 | None | ERR9806865 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748570 | MDR-TB | lineage2.2.1 | None | SRR29094071 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869293 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869241 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096603 | MDR-TB | lineage2.2.1 | None | SRR29093552 | Pre-XDR-TB | lineage2.2.1;lineage2.2.2 | None | SRR16157046 | MDR-TB | lineage2.2.1 | None | SRR29093754 | XDR-TB | lineage2.2.1 | None | ERR3276300 | XDR-TB | lineage2.2.1 | None | ERR6052116 | MDR-TB | lineage2.2.1 | None | ERR9120024 | Pre-XDR-TB | lineage2.2.1 | None | ERR3276297 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156813 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911535 | Pre-XDR-TB | lineage2.2.1 | za | ERR5918016 | XDR-TB | lineage2.2.1 | za | ERR5918018 | XDR-TB | lineage2.2.1 | za | ERR7911612 | Pre-XDR-TB | lineage2.2.1 | za | ERR5987457 | Pre-XDR-TB | lineage2.2.1 | None | ERR9030317 | XDR-TB | lineage2.2.1 | None | ERR1873458 | Pre-XDR-TB | lineage2.2.1 | za | ERR1873508 | HR-TB | lineage2.2.1 | za | SRR29094000 | XDR-TB | lineage2.2.1 | None | SRR29094091 | XDR-TB | lineage2.2.1 | None | ERR10748090 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748123 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011092 | Pre-XDR-TB | lineage2.2.1;lineage2.2.2 | None | ERR6052057 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011059 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748083 | Pre-XDR-TB | lineage2.2.1 | None | ERR3276296 | Pre-XDR-TB | lineage2.2.1 | None | ERR6052095 | MDR-TB | lineage2.2.1 | None | SRR16156782 | MDR-TB | lineage2.2.1 | None | ERR3276295 | Pre-XDR-TB | lineage2.2.1 | None | ERR5758472 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156724 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096818 | MDR-TB | lineage2.2.1 | None | SRR16157051 | MDR-TB | lineage2.2.1 | None | SRR29055877 | Pre-XDR-TB | lineage2.2.1 | None | ERR4423550 | MDR-TB | lineage2.2.1 | None | ERR9120025 | Pre-XDR-TB | lineage2.2.1 | None | ERR3276301 | XDR-TB | lineage2.2.1 | None | SRR29096864 | XDR-TB | lineage2.2.1 | None | ERR4011093 | MDR-TB | lineage2.2.1 | None | SRR16156266 | MDR-TB | lineage2.2.1 | None | ERR4011088 | MDR-TB | lineage2.2.1 | None | SRR29093885 | Pre-XDR-TB | lineage2.2.1 | None | SRR29096450 | XDR-TB | lineage2.2.1 | None | SRR16156246 | MDR-TB | lineage2.2.1 | None | SRR16156729 | MDR-TB | lineage2.2.1 | None | SRR29093355 | XDR-TB | lineage2.2.1 | None | ERR4896320 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831563 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748414 | MDR-TB | lineage2.2.1 | None | ERR1035027 | MDR-TB | lineage2.2.1 | za | ERR10748191 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748361 | Pre-XDR-TB | lineage2.2.1 | None | SRR29093114 | MDR-TB | lineage2.2.1 | None | SRR29096570 | Pre-XDR-TB | lineage2.2.1 | None | ERR4011064 | MDR-TB | lineage2.2.1 | None | ERR9030482 | XDR-TB | lineage2.2.1 | None | ERR9119716 | Pre-XDR-TB | lineage2.2.1 | None | ERR6052086 | Pre-XDR-TB | lineage2.2.1 | None | ERR7911599 | Pre-XDR-TB | lineage2.2.1 | za | ERR9993237 | XDR-TB | lineage2.2.1 | None | ERR8975671 | MDR-TB | lineage2.2.1 | None | ERR5987427 | Pre-XDR-TB | lineage2.2.1 | None | ERR3276299 | XDR-TB | lineage2.2.1 | None | SRR16156707 | MDR-TB | lineage2.2.1 | None | ERR6052052 | MDR-TB | lineage2.2.1 | None | ERR1873482 | Pre-XDR-TB | lineage2.2.1 | None | ERR1873555 | Pre-XDR-TB | lineage2.2.1 | None | ERR4423549 | MDR-TB | lineage2.2.1 | None | SRR16156794 | MDR-TB | lineage2.2.1 | None | ERR9806945 | Pre-XDR-TB | lineage2.2.1 | None | ERR9806932 | MDR-TB | lineage2.2.1 | None | SRR29093435 | Pre-XDR-TB | lineage2.2.1 | None | ERR8025658 | Pre-XDR-TB | lineage2.2.1 | None | ERR6362628 | Pre-XDR-TB | lineage2.2.1 | None | ERR4896318 | MDR-TB | lineage2.2.1 | None | ERR7361982 | Pre-XDR-TB | lineage2.2.1 | None | SRR10869200 | Pre-XDR-TB | lineage2.2.1 | None | SRR29055564 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156270 | MDR-TB | lineage2.2.1 | None | SRR29096503 | MDR-TB | lineage2.2.1 | None | ERR4896319 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156212 | MDR-TB | lineage2.2.1 | None | SRR16156762 | MDR-TB | lineage2.2.1 | None | ERR8025552 | Pre-XDR-TB | lineage2.2.1 | None | ERR8699789 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156283 | MDR-TB | lineage2.2.1 | None | ERR1873545 | MDR-TB | lineage2.2.1 | za | ERR2516014 | Pre-XDR-TB | lineage2.2.1 | za | ERR3276298 | XDR-TB | lineage2.2.1 | None | SRR29093664 | Pre-XDR-TB | lineage2.2.1 | None | SRR16156696 | MDR-TB | lineage2.2.1 | None | SRR10869273 | MDR-TB | lineage2.2.1 | None | ERR3276302 | XDR-TB | lineage2.2.1 | None | ERR13286062 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831577 | XDR-TB | lineage2.2.1 | None | ERR10748493 | Pre-XDR-TB | lineage2.2.1 | None | ERR9030275 | XDR-TB | lineage2.2.1 | None | ERR9120119 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035069 | Pre-XDR-TB | lineage2.2.1 | za | ERR9807013 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
