lineage | Count |
---|---|
lineage2.2.1 | 86 |
lineage4.7 | 1 |
lineage4.6.1.1 | 2 |
lineage2.2.1.2 | 35 |
lineage4.3.3 | 7 |
lineage4;lineage2.2.1 | 1 |
lineage2 | 1 |
lineage4.1.1.3;lineage2.2.1.2 | 1 |
lineage3 | 2 |
lineage4.3.2 | 3 |
lineage2.2.1.1 | 2 |
lineage4.4.1.1 | 2 |
lineage4.8 | 1 |
lineage4.2.1.1;lineage2.2.1 | 1 |
1 | |
lineage4.1.1 | 1 |
spoligotype | Count |
---|---|
None | 147 |
ID | Drug resistance | Lineage | Country iso2 | ERR10680130 | MDR-TB | lineage2.2.1 | None | ERR10969265 | Other | lineage4.7 | None | ERR11044928 | MDR-TB | lineage2.2.1 | None | ERR1199131 | MDR-TB | lineage4.6.1.1 | ug | ERR4796348 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR3287872 | MDR-TB | lineage4.3.3 | pe | ERR4796735 | Pre-XDR-TB | lineage2.2.1.2 | in | ERR4796536 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796965 | Pre-XDR-TB | lineage2.2.1.2 | in | ERR4796745 | MDR-TB | lineage2.2.1.2 | in | ERR4796765 | Pre-XDR-TB | lineage2.2.1.2 | in | ERR4796881 | MDR-TB | lineage2.2.1.2 | in | ERR4797570 | Pre-XDR-TB | lineage4;lineage2.2.1 | in | ERR4797054 | Pre-XDR-TB | lineage2 | None | ERR4796977 | MDR-TB | lineage2.2.1.2 | in | ERR4797048 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797108 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797322 | MDR-TB | lineage2.2.1.2 | in | ERR4797683 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797850 | Pre-XDR-TB | lineage2.2.1.2 | in | ERR4797689 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797765 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797809 | MDR-TB | lineage2.2.1.2 | in | ERR4798141 | Pre-XDR-TB | lineage2.2.1.2 | in | ERR4797994 | Pre-XDR-TB | lineage4.1.1.3;lineage2.2.1.2 | in | ERR4798003 | Pre-XDR-TB | lineage2.2.1.2 | in | ERR4798173 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798430 | MDR-TB | lineage2.2.1.2 | in | ERR4798183 | XDR-TB | lineage2.2.1 | in | ERR4798219 | Pre-XDR-TB | lineage2.2.1.2 | in | ERR4798239 | Pre-XDR-TB | lineage2.2.1.2 | in | ERR4798311 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798170 | MDR-TB | lineage2.2.1.2 | in | ERR4798352 | Pre-XDR-TB | lineage2.2.1.2 | in | ERR4798809 | Pre-XDR-TB | lineage2.2.1 | None | ERR4798468 | MDR-TB | lineage2.2.1.2 | in | ERR4798934 | MDR-TB | lineage2.2.1 | in | ERR4798819 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799343 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4799314 | Pre-XDR-TB | lineage2.2.1 | in | ERR4798939 | MDR-TB | lineage2.2.1 | in | ERR4799043 | MDR-TB | lineage2.2.1 | in | ERR4799232 | Pre-XDR-TB | lineage2.2.1.2 | in | ERR4799257 | MDR-TB | lineage2.2.1 | in | ERR4799487 | Pre-XDR-TB | lineage2.2.1.2 | in | ERR4800628 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR4799727 | MDR-TB | lineage2.2.1.2 | in | ERR4799809 | Pre-XDR-TB | lineage2.2.1.2 | in | ERR4799935 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800085 | Pre-XDR-TB | lineage2.2.1.2 | in | ERR4800226 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800354 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800480 | Pre-XDR-TB | lineage2.2.1 | in | ERR4799808 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800185 | Pre-XDR-TB | lineage2.2.1 | in | ERR4800305 | Pre-XDR-TB | lineage2.2.1.2 | in | ERR4800470 | MDR-TB | lineage3 | in | ERR4800482 | MDR-TB | lineage2.2.1.2 | None | ERR5865023 | MDR-TB | lineage2.2.1 | None | ERR4800692 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865022 | MDR-TB | lineage2.2.1 | None | ERR5865020 | MDR-TB | lineage2.2.1 | None | ERR5865025 | MDR-TB | lineage2.2.1 | None | ERR5865021 | MDR-TB | lineage2.2.1 | None | ERR5865027 | MDR-TB | lineage2.2.1 | None | ERR5866104 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865028 | MDR-TB | lineage2.2.1 | None | ERR5865024 | MDR-TB | lineage2.2.1 | None | ERR5865026 | MDR-TB | lineage2.2.1 | None | ERR5866105 | Pre-XDR-TB | lineage2.2.1 | None | ERR7737661 | MDR-TB | lineage2.2.1 | None | ERR775338 | MDR-TB | lineage4.3.3 | pe | ERR776465 | MDR-TB | lineage4.3.2 | None | ERR7911390 | MDR-TB | lineage2.2.1 | us | ERR7911159 | MDR-TB | lineage2.2.1.1 | vn | ERR779890 | MDR-TB | lineage4.3.3 | pe | ERR8665763 | Pre-XDR-TB | lineage2.2.1 | None | SRR10303324 | MDR-TB | lineage4.4.1.1 | None | ERR9119553 | MDR-TB | lineage4.8 | None | ERR8665762 | Pre-XDR-TB | lineage2.2.1 | None | ERR987780 | MDR-TB | lineage4.6.1.1 | None | SRR13243565 | XDR-TB | lineage2.2.1 | None | SRR13120452 | MDR-TB | lineage2.2.1 | None | SRR13232587 | Pre-XDR-TB | lineage2.2.1 | None | SRR10430375 | MDR-TB | lineage4.4.1.1 | None | SRR13232585 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801695 | MDR-TB | lineage2.2.1 | None | SRR14801512 | MDR-TB | lineage4.2.1.1;lineage2.2.1 | None | SRR16370303 | MDR-TB | lineage2.2.1.1 | None | SRR14807593 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801966 | MDR-TB | lineage2.2.1 | None | SRR14802077 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082341 | MDR-TB | lineage2.2.1 | None | SRR18002877 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715051 | Pre-XDR-TB | lineage2.2.1 | None | SRR22175209 | Pre-XDR-TB | lineage2.2.1 | None | SRR18002991 | Pre-XDR-TB | lineage2.2.1 | None | SRR22424877 | Pre-XDR-TB | lineage2.2.1.2 | None | SRR21887781 | MDR-TB | lineage2.2.1 | None | SRR23861764 | MDR-TB | lineage2.2.1 | None | SRR21887652 | Pre-XDR-TB | lineage2.2.1 | None | SRR21887742 | MDR-TB | lineage2.2.1 | None | SRR3082088 | MDR-TB | lineage2.2.1 | None | ERR4813108 | Pre-XDR-TB | lineage2.2.1 | pe | SRR3105755 | MDR-TB | lineage3 | None | SRR3085339 | MDR-TB | lineage2.2.1 | None | SRR5485503 | MDR-TB | None | SRR3732570 | MDR-TB | lineage4.3.3 | None | ERR2512596 | MDR-TB | lineage2.2.1.2 | gb | SRR2024915 | Pre-XDR-TB | lineage2.2.1 | cn | SRR1723717 | MDR-TB | lineage2.2.1 | cn | ERR2516906 | MDR-TB | lineage2.2.1.2 | gb | ERR2513295 | MDR-TB | lineage2.2.1.2 | gb | SRR5152917 | MDR-TB | lineage2.2.1 | None | SRR5152940 | Pre-XDR-TB | lineage2.2.1 | None | ERR2510194 | MDR-TB | lineage4.3.3 | pe | ERR2510238 | MDR-TB | lineage4.3.3 | pe | ERR2041787 | MDR-TB | lineage2.2.1 | rs | SRR5709799 | Pre-XDR-TB | lineage2.2.1 | th | ERR2516443 | MDR-TB | lineage2.2.1 | None | SRR2024880 | Pre-XDR-TB | lineage2.2.1 | cn | ERR2514267 | MDR-TB | lineage2.2.1.2 | None | SRR5341252 | MDR-TB | lineage2.2.1.2 | in | ERR4827966 | MDR-TB | lineage2.2.1 | None | ERR2516936 | MDR-TB | lineage2.2.1.2 | gb | ERR2514123 | MDR-TB | lineage2.2.1.2 | gb | ERR2515950 | MDR-TB | lineage4.1.1 | za | SRR5709901 | MDR-TB | lineage2.2.1 | th | ERR2041937 | MDR-TB | lineage2.2.1 | None | ERR2864224 | MDR-TB | lineage4.3.2 | pt | SRR5818616 | MDR-TB | lineage2.2.1 | dj | SRR6824470 | Pre-XDR-TB | lineage2.2.1 | cn | ERR4828096 | Pre-XDR-TB | lineage2.2.1 | None | ERR4828100 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830965 | Pre-XDR-TB | lineage2.2.1 | np | SRR671837 | MDR-TB | lineage2.2.1 | cn | SRR6831995 | MDR-TB | lineage2.2.1 | None | ERR4830117 | MDR-TB | lineage2.2.1 | None | SRR6356977 | Pre-XDR-TB | lineage2.2.1 | None | SRR6511640 | MDR-TB | lineage4.3.2 | None | SRR6824558 | MDR-TB | lineage2.2.1 | cn | ERR4831898 | MDR-TB | lineage2.2.1 | None | SRR7517834 | MDR-TB | lineage4.3.3 | pe | SRR8377831 | MDR-TB | lineage2.2.1 | None | SRR8651600 | Pre-XDR-TB | lineage2.2.1 | cn | ERR067674 | Pre-XDR-TB | lineage2.2.1 | ru | DRR130083 | Pre-XDR-TB | lineage2.2.1 | None |
---|