ERR4798219
|
Pre-XDR-TB
|
lineage2.2.1.2
|
in
|
SRR7070182
|
MDR-TB
|
lineage2.2.1.2
|
None
|
ERR5865026
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798170
|
MDR-TB
|
lineage2.2.1.2
|
in
|
SRR16370303
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR5866104
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866105
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29055609
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796348
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
SRR5152940
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR067674
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR6831995
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29055923
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR8377831
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510194
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR13261127
|
HR-TB
|
lineage2.2.1
|
None
|
ERR776465
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR4798809
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800085
|
Pre-XDR-TB
|
lineage2.2.1.2
|
in
|
ERR4798003
|
Pre-XDR-TB
|
lineage2.2.1.2
|
in
|
ERR4797689
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4796965
|
Pre-XDR-TB
|
lineage2.2.1.2
|
in
|
ERR2512596
|
MDR-TB
|
lineage2.2.1.2
|
gb
|
ERR4799257
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR13266893
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266490
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR2516906
|
MDR-TB
|
lineage2.2.1.2
|
gb
|
ERR13266635
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539134
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR775338
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR13261126
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR4799935
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR5341252
|
MDR-TB
|
lineage2.2.1.2
|
in
|
ERR4800185
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29681427
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR3732570
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR16088337
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3105755
|
MDR-TB
|
lineage3
|
None
|
SRR29539331
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18715051
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR2024915
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4798183
|
XDR-TB
|
lineage2.2.1
|
in
|
ERR4800305
|
Pre-XDR-TB
|
lineage2.2.1.2
|
in
|
ERR5865024
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28044339
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
SRR28351570
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11774959
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR4796881
|
MDR-TB
|
lineage2.2.1.2
|
in
|
ERR4798311
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261466
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11774911
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR25827806
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR11774913
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR29274006
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR28351470
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13284029
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4813108
|
Pre-XDR-TB
|
lineage2.2.1
|
pe
|
SRR7517834
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4800226
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4797683
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5865022
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827480
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR13267010
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
DRR130083
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3287872
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4798468
|
MDR-TB
|
lineage2.2.1.2
|
in
|
SRR10303324
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR5865023
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5709901
|
MDR-TB
|
lineage2.2.1
|
th
|
SRR28706699
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14802077
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR21887652
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510238
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR4799809
|
Pre-XDR-TB
|
lineage2.2.1.2
|
in
|
ERR13266600
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29274118
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR6511640
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR29539410
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR18002877
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267095
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
SRR13120452
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266959
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
SRR29539160
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13260957
|
MDR-TB
|
lineage2.2.1.2
|
None
|
ERR4800628
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR11488832
|
MDR-TB
|
lineage4.3.2
|
None
|
ERR13260937
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR4831898
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539211
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285094
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800692
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2864224
|
MDR-TB
|
lineage4.3.2
|
pt
|
ERR5865025
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR2024880
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
SRR29539314
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4799314
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29539009
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR6356977
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865021
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11773813
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR11798541
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539630
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28706682
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801512
|
MDR-TB
|
lineage2.2.1;lineage4.2.1.1
|
None
|
ERR5865020
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799808
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13261117
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13260944
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR4798173
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR13266146
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29055898
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266441
|
XDR-TB
|
lineage2.2.1;lineage4.1.1.3
|
None
|
ERR13261072
|
MDR-TB
|
lineage2.2.1.2
|
None
|
ERR11798556
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR8665763
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266957
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR4798819
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4799487
|
Pre-XDR-TB
|
lineage2.2.1.2
|
in
|
ERR779890
|
MDR-TB
|
lineage4.3.3
|
pe
|
ERR11774908
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28045552
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28045101
|
MDR-TB
|
lineage2.2.1.2
|
None
|
ERR11252412
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR28351259
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800482
|
MDR-TB
|
lineage2.2.1.2
|
None
|
SRR14807593
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14801695
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799232
|
Pre-XDR-TB
|
lineage2.2.1.2
|
in
|
ERR11044928
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4799727
|
MDR-TB
|
lineage2.2.1.2
|
in
|
ERR7737661
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797765
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR4828096
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28351280
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11252647
|
MDR-TB
|
lineage4.3.4.2.1
|
None
|
SRR25827870
|
XDR-TB
|
lineage2.2.1.2
|
None
|
SRR24710135
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266583
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
SRR26159034
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR4797809
|
MDR-TB
|
lineage2.2.1.2
|
in
|
SRR25827613
|
MDR-TB
|
lineage2.2.1.2
|
None
|
ERR4797850
|
Pre-XDR-TB
|
lineage2.2.1.2
|
in
|
SRR25827422
|
Pre-XDR-TB
|
lineage1.1.2;lineage2.2.1.2
|
None
|
ERR2514267
|
MDR-TB
|
lineage2.2.1.2
|
None
|
SRR28393266
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797570
|
Pre-XDR-TB
|
lineage2.2.1;lineage4
|
in
|
SRR25207036
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11082341
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4830117
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR26159064
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
ERR4796977
|
MDR-TB
|
lineage2.2.1.2
|
in
|
SRR21887742
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2020054
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13232585
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827692
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR4798141
|
Pre-XDR-TB
|
lineage2.2.1.2
|
in
|
SRR27450122
|
Other
|
lineage4.5
|
None
|
ERR13266105
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13267037
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488665
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR10430375
|
MDR-TB
|
lineage4.4.1.1
|
None
|
ERR13258371
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13266674
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2514123
|
MDR-TB
|
lineage2.2.1.2
|
gb
|
ERR4796735
|
Pre-XDR-TB
|
lineage2.2.1.2
|
in
|
ERR13266903
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
SRR22424877
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR9119553
|
MDR-TB
|
lineage4.8
|
None
|
SRR671837
|
MDR-TB
|
lineage2.2.1
|
cn
|
ERR10680130
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865027
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4798239
|
Pre-XDR-TB
|
lineage2.2.1.2
|
in
|
ERR4796536
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR2041937
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539780
|
MDR-TB
|
lineage2.2.1;lineage4.3.3
|
None
|
ERR4799043
|
MDR-TB
|
lineage2.2.1
|
in
|
ERR2516443
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29539672
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13266829
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR4798430
|
MDR-TB
|
lineage2.2.1.2
|
in
|
SRR25207054
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4800480
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR14801966
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797322
|
MDR-TB
|
lineage2.2.1.2
|
in
|
ERR13267084
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2041787
|
MDR-TB
|
lineage2.2.1
|
rs
|
ERR8665762
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR18002991
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25827318
|
XDR-TB
|
lineage2.2.1.2;lineage3
|
None
|
ERR2515950
|
MDR-TB
|
lineage4.1.1.1
|
za
|
ERR4798352
|
Pre-XDR-TB
|
lineage2.2.1.2
|
in
|
ERR5865028
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13267003
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR13260197
|
MDR-TB
|
lineage4.3.4.2
|
None
|
ERR13266530
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
SRR29539602
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4797054
|
Pre-XDR-TB
|
lineage2.1
|
None
|
ERR4799343
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR4797048
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR29539803
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516936
|
MDR-TB
|
lineage2.2.1.2
|
gb
|
ERR13244687
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR21887781
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2020070
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207044
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29056351
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4797994
|
Pre-XDR-TB
|
lineage2.2.1.2;lineage4.1.1.3
|
in
|
SRR25206956
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4828100
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR6824470
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR4830965
|
Pre-XDR-TB
|
lineage2.2.1
|
np
|
ERR4797108
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR28351614
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR12790850
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2513295
|
MDR-TB
|
lineage2.2.1.2
|
gb
|
ERR7911390
|
MDR-TB
|
lineage2.2.1
|
us
|
ERR4798939
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR28046349
|
Pre-XDR-TB
|
lineage2.2.1.2
|
None
|
ERR4796745
|
MDR-TB
|
lineage2.2.1.2
|
in
|
ERR10969265
|
Other
|
lineage4.7
|
None
|
ERR4798934
|
MDR-TB
|
lineage2.2.1
|
in
|
SRR3085339
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR5152917
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR25827762
|
Pre-XDR-TB
|
lineage2.2.1.2;lineage3
|
None
|
ERR4800470
|
MDR-TB
|
lineage3
|
in
|
SRR13232587
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911159
|
MDR-TB
|
lineage2.2.1.1
|
vn
|
SRR25207262
|
RR-TB
|
lineage2.2.1
|
None
|
ERR13260257
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3082088
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4800354
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
SRR22175209
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR3724802
|
MDR-TB
|
lineage4.1.3
|
None
|
ERR13260930
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR8651600
|
Pre-XDR-TB
|
lineage2.2.1
|
cn
|
ERR1199131
|
MDR-TB
|
lineage4.6.1.1
|
ug
|
ERR10680046
|
MDR-TB
|
lineage6.2.2
|
None
|
SRR28351599
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4796765
|
Pre-XDR-TB
|
lineage2.2.1.2
|
in
|
SRR5709799
|
Pre-XDR-TB
|
lineage2.2.1
|
th
|
SRR13243565
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR23861764
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR987780
|
MDR-TB
|
lineage4.6.1.1
|
None
|
ERR4827966
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4872151
|
MDR-TB
|
lineage4.8
|
None
|
ERR11774909
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR5818616
|
MDR-TB
|
lineage2.2.1
|
dj
|