lineage | Count |
---|---|
lineage2.2.1 | 34 |
lineage4.3.2.1 | 6 |
lineage4.2.1.1 | 7 |
lineage3 | 6 |
lineage4.8 | 7 |
lineage4.9 | 1 |
lineage2.2.1.1;lineage2.2.1.2;lineage3 | 1 |
lineage4.3.3 | 1 |
lineage2.2.1.1 | 4 |
lineage2.2.2;lineage4.3.2.1 | 1 |
lineage4.1.3 | 6 |
lineage4.3.2 | 2 |
lineage4.3.4.2 | 1 |
lineage4.1.2.1 | 2 |
lineage2.2.2 | 1 |
lineage1.1.3.2 | 1 |
lineage2.1 | 1 |
lineage4.7 | 1 |
lineage4.2.2 | 1 |
spoligotype | Count |
---|---|
None | 84 |
ID | Drug resistance | Lineage | Country iso2 | SRR22137467 | Pre-XDR-TB | lineage2.2.1 | None | SRR10306016 | MDR-TB | lineage2.2.1 | None | ERR9992947 | MDR-TB | lineage4.3.2.1 | None | ERR13284274 | MDR-TB | lineage4.2.1.1 | None | ERR11082429 | MDR-TB | lineage4.2.1.1 | None | SRR22137471 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992779 | XDR-TB | lineage4.3.2.1 | None | SRR5341385 | Pre-XDR-TB | lineage3 | in | ERR4830910 | Pre-XDR-TB | lineage2.2.1 | np | ERR11043557 | MDR-TB | lineage4.8 | None | SRR8791295 | Pre-XDR-TB | lineage4.9 | None | ERR11081345 | MDR-TB | lineage4.8 | None | SRR22137479 | Pre-XDR-TB | lineage2.2.1 | None | SRR29289405 | XDR-TB | lineage3 | None | ERR13284327 | MDR-TB | lineage4.2.1.1 | None | SRR22137468 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284605 | MDR-TB | lineage2.2.1 | None | ERR3335801 | Pre-XDR-TB | lineage3 | pk | SRR25827356 | Pre-XDR-TB | lineage2.2.1.1;lineage2.2.1.2;lineage3 | None | ERR11081227 | MDR-TB | lineage2.2.1 | None | SRR6832732 | Pre-XDR-TB | lineage4.3.3 | None | ERR11083017 | MDR-TB | lineage2.2.1 | None | SRR22137391 | Pre-XDR-TB | lineage2.2.1 | None | SRR6280334 | Pre-XDR-TB | lineage2.2.1.1 | cn | ERR5918015 | Pre-XDR-TB | lineage4.3.2.1 | None | ERR2600575 | Pre-XDR-TB | lineage2.2.1 | None | SRR22137419 | Pre-XDR-TB | lineage2.2.1 | None | ERR8975687 | XDR-TB | lineage2.2.2;lineage4.3.2.1 | None | SRR29385432 | Pre-XDR-TB | lineage2.2.1 | None | SRR28706565 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539695 | MDR-TB | lineage4.8 | None | SRR29126625 | MDR-TB | lineage4.1.3 | None | ERR8975686 | XDR-TB | lineage4.3.2.1 | None | ERR751596 | MDR-TB | lineage4.3.2 | pe | SRR28394289 | MDR-TB | lineage2.2.1 | None | ERR13276413 | MDR-TB | lineage2.2.1 | None | SRR22137435 | Pre-XDR-TB | lineage2.2.1 | None | ERR9907698 | MDR-TB | lineage4.3.4.2 | None | SRR26112776 | Pre-XDR-TB | lineage2.2.1 | None | ERR3148185 | MDR-TB | lineage4.1.2.1 | mx | ERR13285179 | MDR-TB | lineage4.8 | None | ERR4797611 | Pre-XDR-TB | lineage2.2.1 | in | SRR22137433 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043657 | MDR-TB | lineage4.2.1.1 | None | SRR12142428 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830962 | Pre-XDR-TB | lineage2.2.1 | np | SRR10040471 | Pre-XDR-TB | lineage2.2.1 | None | SRR6280207 | Pre-XDR-TB | lineage2.2.1.1 | cn | SRR6832358 | MDR-TB | lineage2.2.1 | None | ERR13194049 | MDR-TB | lineage2.2.2 | None | ERR9993084 | XDR-TB | lineage4.3.2.1 | None | ERR2516347 | MDR-TB | lineage4.2.1.1 | be | ERR11082893 | MDR-TB | lineage4.2.1.1 | None | SRR16156863 | RR-TB | lineage2.2.1.1 | None | ERR4797666 | Other | lineage1.1.3.2 | in | ERR5897080 | Pre-XDR-TB | lineage3 | None | SRR26937040 | MDR-TB | lineage2.1 | None | ERR1034999 | Pre-XDR-TB | lineage4.7 | za | SRR22137428 | Pre-XDR-TB | lineage2.2.1 | None | SRR1723795 | MDR-TB | lineage2.2.1 | cn | SRR10305981 | MDR-TB | lineage4.2.2 | None | ERR5897091 | Pre-XDR-TB | lineage3 | None | ERR5897092 | Pre-XDR-TB | lineage3 | None | ERR4831207 | MDR-TB | lineage4.8 | de | SRR22137478 | Pre-XDR-TB | lineage2.2.1 | None | SRR3724956 | MDR-TB | lineage4.1.3 | None | SRR7517793 | MDR-TB | lineage4.1.3 | ci | SRR24256076 | Pre-XDR-TB | lineage2.2.1 | None | SRR24255878 | Pre-XDR-TB | lineage2.2.1 | None | ERR4829313 | XDR-TB | lineage4.8 | None | SRR28046209 | Pre-XDR-TB | lineage2.2.1 | None | ERR4829435 | MDR-TB | lineage4.1.3 | it | SRR5535687 | MDR-TB | lineage4.1.3 | None | SRR24709877 | MDR-TB | lineage2.2.1 | None | ERR2515405 | Pre-XDR-TB | lineage4.3.2.1 | za | SRR22137418 | Pre-XDR-TB | lineage2.2.1 | None | ERR2653021 | Other | lineage4.1.2.1 | None | ERR3639808 | MDR-TB | lineage4.2.1.1 | None | ERR9907724 | MDR-TB | lineage4.3.2 | None | SRR7517807 | MDR-TB | lineage4.1.3 | None | ERR2020089 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR22137402 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082829 | MDR-TB | lineage4.8 | None | SRR13355783 | MDR-TB | lineage2.2.1 | None |
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