lineage | Count |
---|---|
lineage4.1.1.3 | 37 |
lineage4.3.4.2 | 46 |
lineage2.2.1 | 29 |
lineage2.2.2 | 2 |
lineage4.1.2.1 | 2 |
lineage1.1.2 | 2 |
lineage4.2.1 | 4 |
lineage4.2.1.1 | 1 |
lineage4.1.1.3;lineage4.3.4.2 | 3 |
lineage2.2.1.1 | 6 |
lineage4.2.1;lineage4.8 | 1 |
lineage2.2.1.1;lineage2.2.2 | 1 |
lineage4.6.2.2 | 5 |
lineage4.8 | 1 |
lineage4.3.3 | 1 |
lineage2.2;lineage3 | 1 |
spoligotype | Count |
---|---|
None | 142 |
ID | Drug resistance | Lineage | Country iso2 | ERR3148160 | MDR-TB | lineage4.1.1.3 | None | SRR28393545 | MDR-TB | lineage4.1.1.3 | None | SRR28394046 | MDR-TB | lineage4.1.1.3 | None | ERR6326071 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR6662371 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR3148173 | MDR-TB | lineage4.1.1.3 | mx | SRR3742662 | XDR-TB | lineage2.2.1 | None | ERR11773828 | Pre-XDR-TB | lineage2.2.1 | None | ERR1034837 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR3287383 | MDR-TB | lineage4.1.1.3 | pe | ERR275202 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR1368339 | XDR-TB | lineage2.2.1 | None | SRR6257101 | MDR-TB | lineage2.2.1 | ru | ERR2864276 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR12057444 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4830745 | MDR-TB | lineage2.2.1 | ir | ERR3148154 | MDR-TB | lineage4.1.1.3 | None | ERR1034829 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR3148201 | MDR-TB | lineage4.1.1.3 | mx | ERR4423646 | MDR-TB | lineage4.1.1.3 | None | ERR1035196 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR2516543 | MDR-TB | lineage4.1.1.3 | pe | ERR4831757 | MDR-TB | lineage2.2.2 | vn | ERR3132222 | MDR-TB | lineage2.2.1 | None | ERR1035253 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1034906 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR2516709 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR2516625 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR3287844 | MDR-TB | lineage4.1.1.3 | pe | ERR1035299 | MDR-TB | lineage4.1.2.1 | br | ERR275199 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR29772449 | Pre-XDR-TB | lineage1.1.2 | None | SRR6807716 | Pre-XDR-TB | lineage4.2.1 | None | ERR1035214 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR25207026 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035207 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR21887777 | Pre-XDR-TB | lineage2.2.1 | None | ERR3148183 | MDR-TB | lineage4.1.1.3 | mx | ERR3148222 | Pre-XDR-TB | lineage4.1.1.3 | mx | SRR28393443 | MDR-TB | lineage4.1.1.3 | None | ERR5530522 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR1034859 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR2516573 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR8774289 | MDR-TB | lineage4.1.1.3 | None | SRR6832046 | Pre-XDR-TB | lineage4.2.1.1 | None | ERR1664622 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR1034814 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR2864267 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR9029872 | Pre-XDR-TB | lineage4.1.1.3;lineage4.3.4.2 | None | SRR7755726 | Pre-XDR-TB | lineage4.2.1 | None | SRR3105788 | MDR-TB | lineage2.2.1.1 | None | ERR2516728 | Pre-XDR-TB | lineage4.1.1.3 | pe | SRR3743403 | Pre-XDR-TB | lineage4.2.1 | None | SRR28351518 | MDR-TB | lineage4.2.1;lineage4.8 | None | SRR19276644 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR1034910 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR2516664 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR3148198 | MDR-TB | lineage4.1.1.3 | mx | ERR5866412 | MDR-TB | lineage2.2.1 | None | ERR3148217 | MDR-TB | lineage4.1.1.3 | mx | ERR4809257 | MDR-TB | lineage2.2.1.1;lineage2.2.2 | za | SRR6511601 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR2864298 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1664657 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR1034825 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR2307639 | MDR-TB | lineage2.2.1 | None | ERR2516990 | Pre-XDR-TB | lineage4.3.4.2 | gb | ERR4813420 | Pre-XDR-TB | lineage4.1.1.3 | pe | SRR1368340 | Pre-XDR-TB | lineage2.2.1 | None | SRR1368337 | XDR-TB | lineage2.2.1 | None | SRR21733184 | Pre-XDR-TB | lineage2.2.1 | None | ERR1035195 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR10147712 | MDR-TB | lineage2.2.1 | None | SRR7516373 | HR-TB | lineage2.2.1 | None | ERR1227522 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR275189 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR5866414 | MDR-TB | lineage2.2.1 | None | ERR2864234 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR3742659 | Pre-XDR-TB | lineage2.2.1 | None | SRR3742661 | XDR-TB | lineage2.2.1 | None | SRR28394176 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR12311996 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR8975766 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR2864287 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR8774269 | MDR-TB | lineage4.6.2.2 | None | ERR4797828 | Pre-XDR-TB | lineage4.8 | in | ERR3148172 | MDR-TB | lineage4.1.1.3 | mx | SRR28706516 | MDR-TB | lineage2.2.1 | None | ERR1034905 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR29539774 | Pre-XDR-TB | lineage4.3.3 | None | SRR30180264 | MDR-TB | lineage2.2.1.1 | None | SRR28393884 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR1679585 | MDR-TB | lineage4.6.2.2 | None | ERR2864293 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR12420759 | RR-TB | lineage2.2.1 | None | SRR3742660 | XDR-TB | lineage2.2.1 | None | ERR3561988 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR4813316 | MDR-TB | lineage4.1.1.3 | None | ERR2516525 | Pre-XDR-TB | lineage4.1.1.3 | pe | ERR4423639 | MDR-TB | lineage4.6.2.2 | None | ERR2516901 | Pre-XDR-TB | lineage4.3.4.2 | gb | ERR3148197 | Pre-XDR-TB | lineage4.1.1.3 | mx | ERR2864216 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR3148175 | Pre-XDR-TB | lineage4.1.1.3 | mx | ERR3148219 | MDR-TB | lineage4.1.1.3 | mx | ERR1034867 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR775379 | Pre-XDR-TB | lineage4.1.1.3 | pe | SAMEA5570051 | Pre-XDR-TB | lineage4.1.1.3;lineage4.3.4.2 | None | ERR4423638 | MDR-TB | lineage4.6.2.2 | None | ERR8774267 | MDR-TB | lineage4.6.2.2 | None | ERR1034888 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1034870 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR2516752 | Pre-XDR-TB | lineage4.3.4.2 | gb | SRR8345980 | MDR-TB | lineage2.2.1 | None | SRR29093853 | MDR-TB | lineage2.2.1 | None | SRR7645794 | Pre-XDR-TB | lineage4.2.1 | None | ERR4831756 | MDR-TB | lineage2.2.2 | vn | SRR6511638 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR1035337 | MDR-TB | lineage4.1.2.1 | br | SRR8368702 | MDR-TB | lineage2.2.1 | None | SRR28393391 | MDR-TB | lineage4.1.1.3 | None | SRR28393619 | Pre-XDR-TB | lineage4.1.1.3 | None | ERR4132449 | MDR-TB | lineage2.2.1 | None | SRR25515571 | MDR-TB | lineage2.2.1 | None | SRR6367399 | MDR-TB | lineage1.1.2 | au | SRR1368341 | Pre-XDR-TB | lineage2.2.1.1 | None | SRR6511636 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR1368338 | XDR-TB | lineage2.2.1 | None | ERR1036276 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR3742658 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR3148176 | MDR-TB | lineage4.1.1.3 | mx | SRR13180411 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR3287857 | Pre-XDR-TB | lineage4.1.1.3;lineage4.3.4.2 | None | ERR3287848 | MDR-TB | lineage4.1.1.3 | pe | ERR3148151 | MDR-TB | lineage4.1.1.3 | None | ERR11641184 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR5866413 | MDR-TB | lineage2.2.1 | None | ERR1034903 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR1173380 | Pre-XDR-TB | lineage2.2;lineage3 | None | ERR275187 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR8774358 | MDR-TB | lineage2.2.1 | None | SRR28351287 | MDR-TB | lineage2.2.1.1 | None |
---|