Rv2043c - p.Lys96Thr
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
0 Sensitive
0 RR-TB
4 HR-TB
131 MDR-TB
122 Pre-XDR-TB
7 XDR-TB
2 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 18 |
| lineage2.2.1 | 124 |
| lineage4.2.1 | 45 |
| lineage4.1.2.1 | 2 |
| lineage4.3.2 | 10 |
| lineage4.4.1.1 | 28 |
| lineage2.2.1;lineage3 | 4 |
| lineage4.8 | 1 |
| lineage4.3.2.1 | 10 |
| lineage2.2.1;lineage3.1.2 | 1 |
| lineage3.1.1 | 3 |
| lineage4.3.3 | 5 |
| lineage4.1.3 | 5 |
| lineage4.1.2.1;lineage4.2.1 | 1 |
| lineage6.3.3 | 1 |
| lineage2.2.1;lineage4.3.2.1 | 2 |
| lineage1.1.3.3 | 1 |
| lineage4.5 | 1 |
| lineage4 | 1 |
| lineage1.1.1.1 | 1 |
| lineage4.7 | 1 |
| lineage2.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 266 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR4800413 | MDR-TB | lineage3 | in | SRR11567823 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273993 | Pre-XDR-TB | lineage4.2.1 | None | ERR11798749 | MDR-TB | lineage4.2.1 | None | ERR4822381 | Pre-XDR-TB | lineage2.2.1 | kg | SRR13232594 | Pre-XDR-TB | lineage2.2.1 | None | ERR2653217 | MDR-TB | lineage4.1.2.1 | None | SAMN02360569 | MDR-TB | lineage2.2.1 | kr | SRR29231733 | MDR-TB | lineage4.3.2 | None | ERR13273345 | Pre-XDR-TB | lineage2.2.1 | None | ERR9286005 | MDR-TB | lineage4.4.1.1 | None | SRR8651570 | Pre-XDR-TB | lineage2.2.1 | cn | ERR9286063 | MDR-TB | lineage4.4.1.1 | None | ERR11798612 | MDR-TB | lineage2.2.1 | None | SRR28351578 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR28351426 | MDR-TB | lineage2.2.1 | None | ERR7911095 | MDR-TB | lineage4.2.1 | md | SRR28646054 | Pre-XDR-TB | lineage4.2.1 | None | ERR10762236 | MDR-TB | lineage2.2.1 | None | SRR28351580 | Pre-XDR-TB | lineage3 | None | ERR8665849 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831623 | MDR-TB | lineage2.2.1 | None | ERR4828817 | MDR-TB | lineage2.2.1 | None | ERR2706956 | MDR-TB | lineage4.3.2 | cd | ERR8665888 | Pre-XDR-TB | lineage2.2.1 | None | ERR2706976 | MDR-TB | lineage4.3.2 | cd | ERR4829120 | MDR-TB | lineage4.8 | it | SRR12142359 | MDR-TB | lineage2.2.1 | None | SRR2100392 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR2516660 | MDR-TB | lineage4.2.1 | nl | ERR2516641 | MDR-TB | lineage4.4.1.1 | nl | ERR4815445 | Pre-XDR-TB | lineage4.2.1 | gb | ERR4815504 | HR-TB | lineage4.4.1.1 | gb | ERR2513352 | Pre-XDR-TB | lineage4.4.1.1 | gb | SRR5709891 | Pre-XDR-TB | lineage2.2.1 | th | ERR11050471 | MDR-TB | lineage4.4.1.1 | None | ERR3794416 | MDR-TB | lineage2.2.1 | None | SRR1048963 | MDR-TB | lineage2.2.1 | None | ERR10762247 | MDR-TB | lineage2.2.1 | None | ERR10762488 | MDR-TB | lineage4.2.1 | None | ERR4831594 | MDR-TB | lineage4.3.2.1 | None | SRR5153834 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232686 | Pre-XDR-TB | lineage2.2.1 | None | SRR1048962 | MDR-TB | lineage2.2.1 | None | ERR8665622 | Pre-XDR-TB | lineage2.2.1 | None | ERR9992750 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR10680045 | MDR-TB | lineage4.1.2.1 | None | ERR12796615 | Pre-XDR-TB | lineage2.2.1 | None | SRR24710126 | MDR-TB | lineage2.2.1 | None | ERR13291384 | Pre-XDR-TB | lineage4.2.1 | None | SRR10525354 | Pre-XDR-TB | lineage4.2.1 | None | SRR25827747 | XDR-TB | lineage2.2.1;lineage3.1.2 | None | SRR29539034 | MDR-TB | lineage2.2.1 | None | SRR29231867 | MDR-TB | lineage4.3.2 | None | ERR10748097 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR14801915 | MDR-TB | lineage2.2.1 | None | ERR13290871 | Pre-XDR-TB | lineage2.2.1;lineage3 | None | SRR10525365 | Pre-XDR-TB | lineage4.2.1 | None | ERR13284356 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273653 | Pre-XDR-TB | lineage4.2.1 | None | SRR12062522 | Pre-XDR-TB | lineage2.2.1 | None | ERR1559742 | MDR-TB | lineage2.2.1 | None | SRR29052887 | Pre-XDR-TB | lineage4.2.1 | None | SRR7645846 | MDR-TB | lineage4.2.1 | None | SRR18213771 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR13276292 | MDR-TB | lineage3.1.1 | None | ERR13285735 | MDR-TB | lineage2.2.1 | None | ERR13273246 | Pre-XDR-TB | lineage2.2.1 | None | ERR13291231 | Pre-XDR-TB | lineage4.2.1 | None | SRR10040156 | Pre-XDR-TB | lineage2.2.1 | None | SRR29231697 | MDR-TB | lineage4.3.2 | None | SRR7592337 | Pre-XDR-TB | lineage4.2.1 | None | SRR29539097 | MDR-TB | lineage2.2.1 | None | SRR29681263 | MDR-TB | lineage4.3.3 | None | ERR8665716 | Pre-XDR-TB | lineage2.2.1 | None | SRR25534571 | MDR-TB | lineage2.2.1 | None | SAMN02231187 | MDR-TB | lineage4.1.3 | None | SRR29273753 | Pre-XDR-TB | lineage4.2.1 | None | SRR29273755 | Pre-XDR-TB | lineage4.2.1 | None | ERR11068556 | HR-TB | lineage2.2.1 | None | SRR12420473 | Pre-XDR-TB | lineage2.2.1 | None | SRR7645956 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284646 | MDR-TB | lineage3 | None | SRR28240213 | MDR-TB | lineage4.3.3 | None | ERR11080936 | MDR-TB | lineage3 | None | SRR21677637 | Pre-XDR-TB | lineage4.2.1 | None | ERR4799117 | Pre-XDR-TB | lineage3 | in | SRR29274169 | Pre-XDR-TB | lineage4.2.1 | None | SRR16087888 | Pre-XDR-TB | lineage2.2.1 | None | SRR28646090 | XDR-TB | lineage4.2.1 | None | SRR28351521 | MDR-TB | lineage2.2.1 | None | ERR4822338 | MDR-TB | lineage2.2.1 | de | ERR4822440 | MDR-TB | lineage2.2.1 | de | ERR2707028 | MDR-TB | lineage4.3.2 | cd | ERR2706958 | MDR-TB | lineage4.3.2 | cd | ERR8665592 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830844 | MDR-TB | lineage3.1.1 | et | ERR4830700 | MDR-TB | lineage4.3.3 | dz | SRR21276920 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232636 | Pre-XDR-TB | lineage2.2.1 | None | ERR2513720 | Other | lineage3 | gb | SRR5709869 | Pre-XDR-TB | lineage2.2.1 | th | SRR5709795 | Pre-XDR-TB | lineage2.2.1 | th | ERR551494 | MDR-TB | lineage2.2.1 | tm | SAMEA2534642 | Pre-XDR-TB | lineage2.2.1 | ru | SRR12062521 | Pre-XDR-TB | lineage2.2.1 | None | SRR24827269 | Pre-XDR-TB | lineage4.2.1 | None | SRR7592372 | Pre-XDR-TB | lineage4.2.1 | None | ERR9120052 | MDR-TB | lineage4.3.2.1 | None | SRR23310968 | MDR-TB | lineage2.2.1 | None | SRR11972300 | MDR-TB | lineage2.2.1 | None | SRR10525342 | Pre-XDR-TB | lineage4.1.2.1;lineage4.2.1 | None | ERR5865477 | MDR-TB | lineage2.2.1 | None | ERR5865792 | MDR-TB | lineage4.3.3 | None | ERR11798613 | MDR-TB | lineage2.2.1 | None | ERR8665621 | Pre-XDR-TB | lineage2.2.1 | None | SRR7070136 | MDR-TB | lineage3 | None | ERR2515759 | MDR-TB | lineage4.3.2.1 | za | SRR10828180 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830609 | MDR-TB | lineage2.2.1 | tm | ERR10679998 | MDR-TB | lineage6.3.3 | None | ERR114421 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR998839 | MDR-TB | lineage4.1.3 | None | SRR14802140 | MDR-TB | lineage2.2.1 | None | SRR14782372 | MDR-TB | lineage2.2.1 | None | SRR5153711 | Pre-XDR-TB | lineage2.2.1 | None | ERR9120051 | MDR-TB | lineage4.3.2.1 | None | ERR5866016 | MDR-TB | lineage2.2.1 | None | SRR1013580 | MDR-TB | lineage2.2.1 | None | ERR11082887 | MDR-TB | lineage4.4.1.1 | None | ERR464719 | MDR-TB | lineage4.4.1.1 | ch | ERR13276161 | Pre-XDR-TB | lineage4.2.1 | None | SRR10040134 | MDR-TB | lineage2.2.1 | None | SRR998838 | MDR-TB | lineage4.1.3 | None | SRR29274171 | Pre-XDR-TB | lineage4.2.1 | None | SRR14801597 | Pre-XDR-TB | lineage2.2.1 | None | ERR8665717 | Pre-XDR-TB | lineage2.2.1 | None | SRR10303343 | MDR-TB | lineage2.2.1;lineage4.3.2.1 | None | ERR11044640 | MDR-TB | lineage4.4.1.1 | None | SRR25827499 | Pre-XDR-TB | lineage3 | None | ERR5865791 | MDR-TB | lineage4.3.3 | None | SRR10379895 | MDR-TB | lineage2.2.1 | None | SRR29273841 | Pre-XDR-TB | lineage4.2.1 | None | SRR11662225 | MDR-TB | lineage1.1.3.3 | None | ERR8665761 | Pre-XDR-TB | lineage2.2.1 | None | ERR6362056 | MDR-TB | lineage4.3.2.1 | None | SRR10525350 | Pre-XDR-TB | lineage4.2.1 | None | SRR7070285 | Other | lineage3 | None | SRR29273945 | Pre-XDR-TB | lineage4.2.1 | None | SRR29274158 | Pre-XDR-TB | lineage4.2.1 | None | SRR8374277 | Pre-XDR-TB | lineage2.2.1 | None | ERR551011 | MDR-TB | lineage2.2.1 | None | SRR998837 | MDR-TB | lineage4.1.3 | None | ERR13266820 | XDR-TB | lineage3 | None | SRR10525341 | Pre-XDR-TB | lineage4.2.1 | None | ERR9286028 | Pre-XDR-TB | lineage4.4.1.1 | None | SRR10379974 | MDR-TB | lineage2.2.1 | None | SRR25827790 | XDR-TB | lineage2.2.1;lineage3 | None | ERR5987349 | MDR-TB | lineage4.3.2.1 | None | SRR29273947 | Pre-XDR-TB | lineage4.2.1 | None | ERR13285800 | MDR-TB | lineage4.2.1 | None | ERR13284614 | MDR-TB | lineage2.2.1 | None | SRR29539852 | XDR-TB | lineage2.2.1 | None | SRR29273894 | Pre-XDR-TB | lineage4.2.1 | None | SRR6964512 | MDR-TB | lineage3 | None | ERR2510424 | MDR-TB | lineage3 | pk | SRR28498395 | MDR-TB | lineage2.2.1 | None | ERR3335736 | Pre-XDR-TB | lineage4.5 | pk | SRR29289242 | Pre-XDR-TB | lineage3 | None | SRR29273990 | Pre-XDR-TB | lineage4.2.1 | None | ERR4796503 | XDR-TB | lineage3 | in | SRR11567811 | Pre-XDR-TB | lineage2.2.1 | None | ERR4831095 | Pre-XDR-TB | lineage2.2.1 | None | ERR13267139 | Pre-XDR-TB | lineage3 | None | ERR4822400 | Pre-XDR-TB | lineage2.2.1 | ua | ERR13292529 | MDR-TB | lineage4.3.2.1 | None | ERR4798012 | Pre-XDR-TB | lineage3 | in | SRR8651655 | Pre-XDR-TB | lineage2.2.1 | cn | SRR29273950 | Pre-XDR-TB | lineage4.2.1 | None | SRR29538880 | MDR-TB | lineage2.2.1 | None | ERR4809162 | MDR-TB | lineage4.3.2.1 | None | ERR4813306 | MDR-TB | lineage4 | pe | ERR4831447 | Pre-XDR-TB | lineage3 | None | ERR8665575 | Pre-XDR-TB | lineage2.2.1 | None | ERR8699201 | MDR-TB | lineage4.3.2.1 | None | SRR11972299 | MDR-TB | lineage2.2.1 | None | SRR13232766 | Pre-XDR-TB | lineage2.2.1 | None | SRR6807685 | MDR-TB | lineage2.2.1 | None | SRR5266536 | MDR-TB | lineage2.2.1 | ru | ERR2516995 | Pre-XDR-TB | lineage4.2.1 | gb | ERR2517045 | Pre-XDR-TB | lineage4.4.1.1 | gb | SRR8217901 | MDR-TB | lineage1.1.1.1 | None | SRR998840 | MDR-TB | lineage4.1.3 | None | ERR553348 | MDR-TB | lineage2.2.1 | None | ERR1559743 | Pre-XDR-TB | lineage2.2.1 | None | SRR5153307 | Pre-XDR-TB | lineage2.2.1 | None | SRR5153608 | Pre-XDR-TB | lineage2.2.1 | None | SRR24710168 | Pre-XDR-TB | lineage2.2.1 | None | SRR21887720 | Pre-XDR-TB | lineage2.2.1 | None | SRR7517716 | MDR-TB | lineage4.4.1.1 | ch | SRR14782536 | Pre-XDR-TB | lineage2.2.1 | None | SRR13180320 | Pre-XDR-TB | lineage2.2.1 | None | SRR7592341 | MDR-TB | lineage4.7 | None | SRR18715285 | Pre-XDR-TB | lineage2.2.1 | None | SRR7592385 | Pre-XDR-TB | lineage4.2.1 | None | SRR6458431 | Pre-XDR-TB | lineage2.2.1 | None | SRR6785534 | MDR-TB | lineage2.2.1 | None | ERR5865928 | Pre-XDR-TB | lineage2.2.1 | None | ERR3639777 | MDR-TB | lineage4.4.1.1 | None | ERR4816369 | Pre-XDR-TB | lineage4.2.1 | gb | ERR13286050 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR9992834 | MDR-TB | lineage4.3.2 | None | ERR2516364 | XDR-TB | lineage2.2.1 | be | ERR552429 | Pre-XDR-TB | lineage2.2.1 | None | ERR11044643 | MDR-TB | lineage4.4.1.1 | None | ERR9285997 | MDR-TB | lineage4.4.1.1 | None | ERR7910906 | MDR-TB | lineage4.2.1 | None | ERR11043925 | Pre-XDR-TB | lineage4.2.1 | None | ERR11044136 | MDR-TB | lineage2.2.1 | None | ERR8665760 | Pre-XDR-TB | lineage2.2.1 | None | SRR29274170 | Pre-XDR-TB | lineage4.2.1 | None | ERR9286003 | MDR-TB | lineage4.4.1.1 | None | SRR8847012 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865476 | MDR-TB | lineage2.2.1 | None | SRR29056362 | MDR-TB | lineage4.3.2 | None | ERR13285723 | MDR-TB | lineage2.2.1 | None | SRR26400065 | MDR-TB | lineage2.1 | None | ERR13261383 | Pre-XDR-TB | lineage2.2.1 | None | SRR16157094 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR405205 | MDR-TB | lineage4.4.1.1 | None | SRR29539692 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232508 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256105 | MDR-TB | lineage2.2.1 | None | SRR11567822 | Pre-XDR-TB | lineage2.2.1 | None | SRR7592352 | Pre-XDR-TB | lineage4.2.1 | None | ERR405207 | MDR-TB | lineage4.4.1.1 | None | SRR13180211 | MDR-TB | lineage2.2.1 | None | ERR2307384 | Pre-XDR-TB | lineage2.2.1 | None | SRR10040421 | MDR-TB | lineage2.2.1 | None | SRR5153819 | MDR-TB | lineage2.2.1 | None | ERR11044544 | MDR-TB | lineage4.4.1.1 | None | SRR29273986 | Pre-XDR-TB | lineage4.2.1 | None | SRR24709934 | Pre-XDR-TB | lineage2.2.1 | None | ERR13292530 | MDR-TB | lineage4.3.2.1 | None | SRR10430396 | MDR-TB | lineage2.2.1;lineage4.3.2.1 | None | SRR29273667 | MDR-TB | lineage4.2.1 | None | SRR12142319 | MDR-TB | lineage2.2.1 | None | SRR12420321 | Pre-XDR-TB | lineage2.2.1 | None | SRR16089533 | Pre-XDR-TB | lineage4.2.1 | None | SRR29231704 | MDR-TB | lineage4.3.2 | None | SRR10040418 | MDR-TB | lineage2.2.1 | None | SRR1013579 | MDR-TB | lineage2.2.1 | None | SRR12420309 | HR-TB | lineage2.2.1 | None | ERR9285998 | MDR-TB | lineage4.4.1.1 | None | SRR5153229 | MDR-TB | lineage2.2.1 | None | SRR29289317 | HR-TB | lineage3 | None | SRR14802066 | Pre-XDR-TB | lineage2.2.1 | None | SRR29273625 | MDR-TB | lineage4.2.1 | None | ERR552430 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866017 | MDR-TB | lineage2.2.1 | None | ERR11081181 | MDR-TB | lineage3.1.1 | None | ERR11049607 | MDR-TB | lineage4.4.1.1 | None | SRR12420393 | Pre-XDR-TB | lineage2.2.1 | None | SRR15315941 | Pre-XDR-TB | lineage2.2.1 | None | ERR4799474 | Pre-XDR-TB | lineage2.2.1;lineage3 | in | SRR6458417 | Pre-XDR-TB | lineage2.2.1 | None |
|---|
