SAMN02398698
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR11489066
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SAMN02398696
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR13290542
|
MDR-TB
|
lineage4.1.4
|
None
|
SRR024053
|
MDR-TB
|
lineage4.8
|
None
|
ERR4812883
|
MDR-TB
|
lineage4.9
|
pe
|
SRR1165457
|
MDR-TB
|
lineage4.1.4
|
None
|
ERR7737812
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29273979
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR24256194
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR027451
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
SRR1173548
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR6398011
|
MDR-TB
|
lineage2.2.1
|
ca
|
ERR751488
|
MDR-TB
|
lineage4
|
pe
|
ERR5865130
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510175
|
MDR-TB
|
lineage4
|
pe
|
SRR25827387
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR6397810
|
MDR-TB
|
lineage3
|
ca
|
SRR1048843
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR6079935
|
MDR-TB
|
lineage2.2.1.1
|
au
|
SRR11662343
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393848
|
MDR-TB
|
lineage4
|
None
|
ERR5865180
|
MDR-TB
|
lineage4.3.3
|
None
|
SRR14807629
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488386
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
DRR454967
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR11488482
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR16088421
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866214
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864892
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR11488720
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488516
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR1144807
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1144776
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4457925
|
MDR-TB
|
lineage4
|
None
|
ERR4457924
|
MDR-TB
|
lineage4
|
None
|
ERR11488362
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4020200
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488687
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR28706614
|
MDR-TB
|
lineage4.2.1.1
|
None
|
SRR16156676
|
Pre-XDR-TB
|
lineage2.2.1.1
|
None
|
SRR16370372
|
Other
|
lineage2.2.1
|
None
|
ERR751411
|
MDR-TB
|
lineage4
|
pe
|
ERR11488852
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR2515335
|
Pre-XDR-TB
|
lineage4.1.2.1
|
za
|
ERR11466253
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4827736
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831492
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR4809353
|
MDR-TB
|
lineage4.1.2.1
|
za
|
ERR9286014
|
MDR-TB
|
lineage4.1.4
|
None
|
ERR551537
|
MDR-TB
|
lineage4.1.2.1;lineage4.3.4.2
|
sz
|
SRR17657993
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488341
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR11138658
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR14801639
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488510
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR3085310
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
ERR552141
|
MDR-TB
|
lineage2.2.1
|
ru
|
ERR4423745
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR25207193
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2516458
|
MDR-TB
|
lineage4
|
pe
|
SRR14782667
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR11488891
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488905
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SAMN02360591
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR5525987
|
MDR-TB
|
lineage2.2.1.1
|
pg
|
SRR29289253
|
XDR-TB
|
lineage3
|
None
|
ERR11798568
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488937
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488756
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488956
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488846
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR29274093
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR1013679
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR23862165
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR7361997
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR10040211
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR11488912
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SAMN02398713
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR11488769
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488441
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR10869182
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR21887786
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2510654
|
Pre-XDR-TB
|
lineage2.2.1
|
it
|
ERR5865127
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR24256205
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488893
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488477
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488598
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR28393626
|
MDR-TB
|
lineage4
|
None
|
ERR439973
|
MDR-TB
|
lineage5.1.4
|
None
|
SRR1049074
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11488508
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9125510
|
MDR-TB
|
lineage1.2.1.2
|
None
|
ERR8774358
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11775078
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13281470
|
MDR-TB
|
lineage4.1.4
|
None
|
SRR28393265
|
MDR-TB
|
lineage4
|
None
|
SRR28646078
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28393961
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR10762428
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR10762376
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR28393655
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR5866172
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR6362566
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29538944
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4809003
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29914433
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13284139
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488361
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488960
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR23310826
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5866516
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02398704
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR1162877
|
MDR-TB
|
lineage4.1.4
|
None
|
SRR5217432
|
RR-TB
|
lineage2.2.1
|
None
|
SRR21276943
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11466281
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488927
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488766
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SAMN02360613
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR5152927
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR14801955
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1048864
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR16370670
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488504
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488596
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28045381
|
MDR-TB
|
lineage1.1.2
|
None
|
SRR29538955
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11489010
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR26331606
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR3287536
|
MDR-TB
|
lineage4
|
None
|
ERR10680210
|
RR-TB
|
lineage4.1.2.1
|
None
|
ERR10748478
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488327
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488652
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28393588
|
MDR-TB
|
lineage4.1.2.1;lineage4.8
|
None
|
ERR3639799
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29093252
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR3287443
|
MDR-TB
|
lineage4
|
pe
|
SRR28498649
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR11488447
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR5864893
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR751356
|
MDR-TB
|
lineage4
|
pe
|
ERR1873563
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02414948
|
MDR-TB
|
lineage4.1.4
|
se
|
ERR11138650
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR9806982
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865325
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5865512
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR1873455
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
SRR24255898
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR13870364
|
Pre-XDR-TB
|
lineage4
|
None
|
SRR24256243
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11773831
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11082614
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR11488468
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR24256076
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR751526
|
MDR-TB
|
lineage4
|
pe
|
SRR998858
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR8975483
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR5007183
|
MDR-TB
|
lineage4.3.4.1
|
None
|
ERR3273175
|
Pre-XDR-TB
|
lineage1.1.1
|
None
|
ERR8774466
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR551045
|
MDR-TB
|
lineage4.1.2.1
|
sz
|
SRR1049062
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR5864894
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR2510643
|
Pre-XDR-TB
|
lineage4.5
|
pk
|
ERR13276109
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801638
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1013544
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11488503
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488679
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488788
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR2101598
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1162480
|
Pre-XDR-TB
|
lineage4.1.3
|
None
|
ERR8025551
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11798696
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR11489053
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR25207149
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR10748360
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR5865183
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR11488865
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488644
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11082091
|
MDR-TB
|
lineage4
|
None
|
SRR5486902
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488487
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR751478
|
MDR-TB
|
lineage4
|
pe
|
SRR6256977
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR7911620
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR11488563
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR2515165
|
MDR-TB
|
lineage4.1.2.1
|
za
|
SRR13232533
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1167295
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1144749
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR3287527
|
MDR-TB
|
lineage4
|
None
|
SRR10380238
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR7645800
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488509
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11043603
|
MDR-TB
|
lineage4.1.4
|
None
|
ERR9993095
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR11349188
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11798569
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR550851
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488804
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488645
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR22424941
|
Pre-XDR-TB
|
lineage1.1.2
|
None
|
SRR1048842
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR4423755
|
HR-TB
|
lineage4.1.2.1
|
None
|
ERR11488465
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29273829
|
XDR-TB
|
lineage4.1.2.1
|
None
|
SRR29273673
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488413
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR5865128
|
MDR-TB
|
lineage2.2.1
|
None
|
SAMN02398711
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR1167058
|
MDR-TB
|
lineage4.1.4
|
None
|
SRR13583329
|
MDR-TB
|
lineage4.3.2
|
None
|
SRR10040162
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR11349136
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11138653
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1013543
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10525375
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488757
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR158616
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR7911114
|
Pre-XDR-TB
|
lineage2.2.1
|
vn
|
ERR8025653
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR29539711
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4457843
|
MDR-TB
|
lineage4
|
None
|
SRR16156863
|
RR-TB
|
lineage2.2.1.1
|
None
|
SRR10869143
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488602
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR751465
|
MDR-TB
|
lineage4
|
pe
|
ERR11488838
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR11252653
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR1679656
|
MDR-TB
|
lineage4.6.2.2
|
ng
|
ERR11488828
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR6807720
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1173582
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1103621
|
Pre-XDR-TB
|
lineage4.1.3
|
None
|
ERR7339051
|
MDR-TB
|
lineage4
|
None
|
ERR7339052
|
MDR-TB
|
lineage4
|
None
|
ERR4423756
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR751540
|
MDR-TB
|
lineage4
|
pe
|
SRR24710096
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR7361998
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR137206
|
MDR-TB
|
lineage2.2.1
|
ru
|
DRR474005
|
HR-TB
|
lineage2.2.1
|
None
|
SRR1144790
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR13260151
|
MDR-TB
|
lineage4
|
None
|
ERR2600420
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1034737
|
MDR-TB
|
lineage4
|
pe
|
ERR11488822
|
Pre-XDR-TB
|
lineage2.2.1;lineage4.1.2.1
|
None
|
SRR1013564
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR5864897
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR5864895
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR11488601
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR10303288
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28394078
|
MDR-TB
|
lineage4
|
None
|
ERR11488331
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR7645849
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4020199
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488581
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR1013680
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11488930
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR1162773
|
Pre-XDR-TB
|
lineage4.1.3
|
None
|
SRR28394219
|
MDR-TB
|
lineage4.1.1.3;lineage4.1.2.1
|
None
|
SRR28498636
|
XDR-TB
|
lineage2.2.1
|
None
|
SRR28393982
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR2516361
|
MDR-TB
|
lineage3.1.1
|
be
|
SRR10380032
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR751521
|
MDR-TB
|
lineage4
|
pe
|
ERR8774468
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR6353877
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11488486
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488731
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488662
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29096506
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207239
|
Pre-XDR-TB
|
lineage4.5
|
None
|
ERR13290544
|
MDR-TB
|
lineage4.1.4
|
None
|
ERR551472
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR14801673
|
MDR-TB
|
lineage4.2.1
|
None
|
ERR4812485
|
Pre-XDR-TB
|
lineage4
|
pe
|
ERR5865181
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR7911718
|
MDR-TB
|
lineage2.2.1
|
us
|
ERR11488648
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR5865513
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR5866213
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28351628
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR28393369
|
MDR-TB
|
lineage4
|
None
|
ERR11488854
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4797196
|
MDR-TB
|
lineage1.2.2.2;lineage4.3.3
|
in
|
SAMN02403638
|
MDR-TB
|
lineage4.1.2.1
|
za
|
SRR29538916
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29772672
|
MDR-TB
|
lineage2.2.1.1
|
None
|
ERR10748490
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR6052031
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2510611
|
Pre-XDR-TB
|
lineage3
|
pk
|
SAMN02360551
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR1162867
|
MDR-TB
|
lineage4.1.4
|
None
|
SRR1144813
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1034755
|
MDR-TB
|
lineage4
|
pe
|
SRR29273630
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4809284
|
MDR-TB
|
lineage4.1.2.1
|
za
|
ERR11488354
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR552010
|
MDR-TB
|
lineage4.1.2.1
|
sz
|
ERR5865182
|
MDR-TB
|
lineage4.3.3
|
None
|
ERR751452
|
Pre-XDR-TB
|
lineage4
|
pe
|
SAMN02360561
|
MDR-TB
|
lineage2.2.2
|
kr
|
ERR13284322
|
MDR-TB
|
lineage4
|
None
|
ERR11488336
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR2515554
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR24255920
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR10379950
|
Pre-XDR-TB
|
lineage4.2.1
|
None
|
SRR10430365
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488675
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR3794408
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29274107
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488595
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR23938622
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR2515284
|
MDR-TB
|
lineage4.1.2.1
|
za
|
ERR751531
|
MDR-TB
|
lineage4
|
pe
|
ERR11488466
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR14807613
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR4831491
|
XDR-TB
|
lineage4.5
|
None
|
SRR28498642
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR9119834
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SAMN02360556
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR1873416
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR14782122
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR1144783
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR29273803
|
MDR-TB
|
lineage4
|
None
|
ERR2517018
|
MDR-TB
|
lineage1.1.3.2
|
gb
|
ERR13284545
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR13285911
|
MDR-TB
|
lineage4.2.1
|
None
|
SAMN02360619
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SAMN02398693
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
SRR7070071
|
MDR-TB
|
lineage4.5
|
None
|
ERR144567
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR5865327
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR25207274
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02398712
|
Pre-XDR-TB
|
lineage2.2.2
|
kr
|
ERR775380
|
MDR-TB
|
lineage4
|
pe
|
SRR8791300
|
Other
|
lineage4.9
|
None
|
SRR20970044
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11138648
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR11488825
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488604
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR5864901
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR1013668
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR11349209
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR3287445
|
MDR-TB
|
lineage4
|
pe
|
ERR5864891
|
XDR-TB
|
lineage4.8
|
None
|
ERR5866095
|
XDR-TB
|
lineage2.2.1
|
None
|
ERR550850
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1049063
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR10525364
|
MDR-TB
|
lineage4
|
None
|
ERR8025494
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR23310994
|
HR-TB
|
lineage4.2.1
|
None
|
SRR10040223
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR137217
|
Pre-XDR-TB
|
lineage2.2.1
|
ru
|
ERR3287696
|
MDR-TB
|
lineage4
|
pe
|
ERR11081219
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5897081
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR21747066
|
MDR-TB
|
lineage4.1.2
|
None
|
ERR4800282
|
Pre-XDR-TB
|
lineage2.2.1
|
in
|
ERR5866215
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1013669
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR5709873
|
MDR-TB
|
lineage2.2.1
|
th
|
SRR3743388
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2515210
|
MDR-TB
|
lineage4.1.2.1
|
za
|
ERR11489024
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13243368
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR29274029
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13290810
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR9992864
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488673
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR5864900
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR7910926
|
MDR-TB
|
lineage4.2.1
|
md
|
SRR10040198
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR1873412
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5866173
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5864898
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR13232518
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488793
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11466502
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR1873484
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR11488855
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR25827419
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR29016853
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5864899
|
Pre-XDR-TB
|
lineage4.8
|
None
|
SRR24673552
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR1034887
|
MDR-TB
|
lineage4.6.1.2
|
pt
|
ERR13284596
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR1873457
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR9806885
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR16058635
|
MDR-TB
|
lineage1.2.1.2
|
None
|
SRR24256326
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11798695
|
MDR-TB
|
lineage4.2.1
|
None
|
SRR6353873
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1047984
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1049075
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
SRR1048863
|
MDR-TB
|
lineage2.2.2
|
None
|
SRR14782434
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR2515246
|
MDR-TB
|
lineage4.1.2.1
|
za
|
ERR11488883
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR5866515
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR11489064
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
SRR28394038
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28351310
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28393960
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11252556
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR28045250
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SRR28239885
|
MDR-TB
|
lineage2.2.1
|
None
|
ERR5897074
|
Pre-XDR-TB
|
lineage3
|
None
|
SRR29681373
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29681471
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488894
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4423743
|
MDR-TB
|
lineage4.1.2.1
|
None
|
SRR29539228
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR10380243
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR28394297
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4828014
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR7911191
|
MDR-TB
|
lineage4.1.2.1
|
za
|
SRR1144780
|
Pre-XDR-TB
|
lineage2.2.2
|
None
|
ERR7911703
|
Pre-XDR-TB
|
lineage2.2.1
|
za
|
ERR9806619
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR13262012
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
SRR29341531
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR4011060
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR11488453
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488357
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR11488507
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR4827535
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR15014722
|
MDR-TB
|
lineage1.1.2
|
None
|
ERR9806688
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR9806906
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR5865326
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4813603
|
MDR-TB
|
lineage4
|
None
|
SRR29273691
|
Pre-XDR-TB
|
lineage4.1.2.1
|
None
|
ERR5864896
|
Pre-XDR-TB
|
lineage4.8
|
None
|
ERR13289365
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR5865129
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR29914409
|
MDR-TB
|
lineage2.2.1
|
None
|
SRR1165318
|
MDR-TB
|
lineage4.1.2.1
|
None
|
ERR10762310
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
SAMN02231154
|
Pre-XDR-TB
|
lineage4.1.3
|
ml
|
ERR6052056
|
Pre-XDR-TB
|
lineage2.2.1
|
None
|
ERR4810977
|
Pre-XDR-TB
|
lineage4.5
|
cn
|
ERR4553534
|
MDR-TB
|
lineage2.2.2
|
None
|
ERR13261258
|
Pre-XDR-TB
|
lineage4.2.2.2
|
None
|
ERR4813115
|
MDR-TB
|
lineage4
|
None
|
ERR11488417
|
MDR-TB
|
lineage4.1.2.1
|
None
|