Rv2245 - c.18C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
12821 Sensitive
297 RR-TB
2342 HR-TB
1946 MDR-TB
278 Pre-XDR-TB
78 XDR-TB
11666 Other
lineage Counts
| lineage | Count |
|---|---|
| La1.8.1 | 6975 |
| lineage1.1.1.1 | 1245 |
| lineage1.2.2.2 | 2589 |
| La1.7.1 | 894 |
| lineage1.1.3.3 | 235 |
| lineage1.1.3.1 | 1130 |
| lineage1.1.2 | 4309 |
| lineage1.1.1 | 1005 |
| lineage1.2.2.1 | 385 |
| La1.4 | 127 |
| La1.2 | 688 |
| lineage1.2.1.2.1 | 3475 |
| lineage6.1.2 | 113 |
| lineage6.1.3 | 410 |
| lineage1.1;lineage4.1.3 | 1 |
| lineage7 | 79 |
| La1.2.BCG | 664 |
| lineage1.2.1.2 | 605 |
| La1.7 | 32 |
| 134 | |
| lineage3.1.2.2 | 1 |
| La2 | 267 |
| La1.3 | 135 |
| La1.8.2 | 257 |
| lineage6.3.1 | 293 |
| lineage5.1 | 68 |
| La1.7.X-unk4 | 84 |
| lineage1.2.1.1 | 181 |
| lineage1.1.3.2 | 376 |
| lineage1.1.3 | 227 |
| lineage6 | 45 |
| La1.6 | 130 |
| lineage5.1.4 | 77 |
| lineage6.2.3 | 117 |
| lineage4.7 | 1 |
| lineage5.1.2 | 65 |
| M.canetti | 75 |
| La3 | 240 |
| lineage1.1.2;lineage1.1.3.3 | 7 |
| lineage6.2.2 | 92 |
| lineage6.1.1 | 249 |
| lineage4.2.2;lineage6.1.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 4 |
| lineage1.1.2;lineage1.2.2.2 | 12 |
| lineage2.1;lineage6.3 | 2 |
| lineage1.2.2.2;lineage3 | 13 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage1.1.2;lineage4 | 15 |
| lineage2.2 | 2 |
| lineage1.2.2.2;lineage4 | 10 |
| lineage1.2.1 | 62 |
| lineage2.2.1 | 9 |
| lineage1.2.2.2;lineage3.1.2 | 1 |
| lineage5.3 | 48 |
| lineage1.1 | 29 |
| lineage1.1.1.1;lineage2.2.1 | 26 |
| lineage5.1.1 | 194 |
| lineage1.1.2;lineage4.1.2 | 1 |
| lineage1.1.3.1;lineage4 | 4 |
| lineage4.9;lineage6.3 | 6 |
| La1.7.X-unk5 | 12 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 1 |
| lineage1;lineage2.2.1;lineage3;lineage4 | 1 |
| La1.8.1;lineage4.9 | 3 |
| lineage1.1.2;lineage1.1.3.1 | 6 |
| La2;M.canetti | 1 |
| La1.1 | 9 |
| lineage1.2.2.1;lineage4.1.2 | 4 |
| lineage2.2.1.1;lineage6.1.2 | 1 |
| lineage5.1.5 | 22 |
| lineage1.2.2.1;lineage2.2.1 | 1 |
| lineage1.2.2 | 26 |
| lineage1.1.1.1;lineage6 | 1 |
| lineage1.1;lineage4 | 1 |
| La3;M.canetti | 9 |
| lineage1.1.1.1;lineage4.2.1 | 2 |
| La1 | 8 |
| lineage1.1.2;lineage4.9 | 4 |
| lineage6.2.1 | 32 |
| lineage5.2 | 72 |
| lineage5 | 29 |
| lineage1.1.2;lineage4.1.3 | 1 |
| La1.8.1;lineage4 | 2 |
| lineage4.1.3 | 2 |
| lineage1.1.1;lineage2.2.1 | 7 |
| lineage1.2.2.1;lineage4.9 | 1 |
| lineage2.1 | 1 |
| lineage9 | 36 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| lineage8 | 5 |
| lineage1.2.1;lineage2.2.1;lineage4;lineage6.3 | 1 |
| lineage1.2.2.1;lineage4 | 5 |
| lineage1.1.3.3;lineage2.2.1 | 2 |
| lineage1.1.3.1;lineage3 | 3 |
| lineage1.1.2;lineage4.1.2.1 | 3 |
| lineage6.3.3 | 53 |
| lineage1.1.2;lineage2.2.1 | 14 |
| lineage1.1.3.1;lineage4.7 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 3 |
| M.canetti;lineage2.2 | 2 |
| lineage1.1.3.1;lineage1.2.2.2 | 3 |
| lineage1.2.2.2;lineage4.1.1.3 | 2 |
| lineage6.3.2 | 25 |
| lineage5.1.2;lineage6.3.1 | 1 |
| La1.6;lineage4 | 2 |
| lineage1.2.1.2.1;lineage2.2.1 | 9 |
| lineage1.1.2;lineage2.2.1.2 | 1 |
| lineage1.2.2.2;lineage4.1;lineage4.3.3 | 1 |
| La1.2.BCG;lineage4.8 | 1 |
| La1.2.BCG;lineage4.9 | 8 |
| lineage4.9 | 20 |
| lineage1.1.2;lineage4.9.1 | 1 |
| lineage1.2.1.2.1;lineage4 | 2 |
| lineage4.1.3;lineage6.3.1 | 4 |
| lineage1.2.1.2.1;lineage4.4.2 | 1 |
| lineage1.1.2;lineage4.3.2.1 | 2 |
| lineage1.2.2.2;lineage2.2.1 | 22 |
| La1.3;lineage1.2.2.2 | 11 |
| lineage5.1.3 | 38 |
| lineage6.2 | 2 |
| lineage1.1.2;lineage4.8 | 2 |
| lineage1.1.2;lineage2 | 2 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8 | 2 |
| lineage1.1.3;lineage1.2.2.2 | 1 |
| lineage1.2.1.2.1;lineage2.2.2;lineage4.1.2;lineage4.2.2 | 1 |
| lineage1.1.1;lineage2.2 | 1 |
| lineage1.1.1.1;lineage4.4 | 1 |
| lineage1.1.1;lineage4.2.2 | 1 |
| lineage6.1.3;lineage6.2.2 | 1 |
| lineage1.2.2.2;lineage4.3.2.1 | 3 |
| La1.8.X-unk6 | 9 |
| lineage1.1.2;lineage3 | 14 |
| lineage2.1;lineage4.9 | 6 |
| lineage1.2.2.1;lineage4.8.1 | 1 |
| lineage6.1 | 3 |
| lineage4.1.2.1;lineage6.2.3 | 1 |
| lineage4.1.2.1;lineage6.1.3 | 1 |
| lineage4.8 | 2 |
| lineage1.1.3.2;lineage4 | 5 |
| lineage4 | 3 |
| lineage5.1.5;lineage6.1.1 | 1 |
| lineage4.6.2.2 | 2 |
| lineage1.2.2.2;lineage2.2.1;lineage3 | 3 |
| lineage1.1.3.1;lineage3.1 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| La1.2.BCG;La1.8.2 | 1 |
| La1.5 | 8 |
| lineage1.1.3.2;lineage4.3.4.2.1 | 1 |
| lineage1.1.2;lineage4.3.4.2.1 | 1 |
| lineage1.1.1;lineage2.2.1.2 | 2 |
| lineage1.2.2.2;lineage2.2.1;lineage3;lineage4.9 | 1 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage1.1.3.1;lineage4.3.4.2 | 1 |
| lineage4.1.3;lineage6.2.1 | 1 |
| La1.3;lineage1.2.1.2.1 | 1 |
| lineage1.1.1.1;lineage2.2.1.1 | 4 |
| La1;lineage1.1.2 | 2 |
| lineage1.1.2;lineage3.1.1 | 8 |
| lineage4.3.4 | 2 |
| La1.7;lineage4.9 | 1 |
| lineage4.1;lineage6.1.3 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 4 |
| M.canetti;lineage4.9 | 1 |
| lineage1.1.2;lineage4.3.4.1 | 1 |
| lineage1.1.2;lineage3.1.2 | 3 |
| lineage1.1.2;lineage4.1 | 3 |
| lineage1.1.3.1;lineage2.2.1 | 4 |
| lineage4.1.1.1 | 1 |
| lineage6.1.1;lineage6.2 | 1 |
| lineage1.2.2.1;lineage4.9.1 | 1 |
| lineage1.1.2;lineage1.1.3 | 1 |
| lineage1.2.2.2;lineage2.2.1;lineage3.1.2;lineage4 | 1 |
| lineage1.2.1.2.1;lineage4.3 | 1 |
| lineage1.2.2.2;lineage4.8 | 1 |
| lineage4.1.2.1 | 7 |
| lineage1.1.1;lineage1.1.3.3 | 1 |
| lineage1.1.2;lineage1.1.3.1;lineage2.2.1 | 1 |
| lineage6.1.3;lineage6.3.3 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| lineage4;lineage6.3.1 | 4 |
| lineage1.1.1.1;lineage4 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La2;lineage4.9 | 2 |
| lineage1.1.1.1;lineage4.8 | 1 |
| lineage4.9;lineage9 | 1 |
| lineage1.1.2;lineage4.7 | 1 |
| lineage1.1.1.1;lineage2.2.1;lineage4.4.2 | 1 |
| lineage4.6.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | 1 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 4 |
| lineage4.8;lineage6.3.1 | 1 |
| lineage4.1;lineage6.3.1 | 2 |
| lineage6.1.1;lineage6.1.3 | 1 |
| La1.6;lineage4.1 | 1 |
| lineage1.1.2;lineage3.1.1;lineage4.3;lineage4.6.1.1 | 1 |
| lineage1.1.3.2;lineage3.1.1 | 2 |
| M.canetti;lineage2.1;lineage6.3 | 2 |
| lineage6.1.3;lineage6.2 | 2 |
| lineage5.1.1;lineage5.1.2;lineage6.3.1 | 1 |
| lineage1.1.1.1;lineage4.2.2 | 1 |
| lineage1.2.2.2;lineage4.1.2 | 2 |
| La3;lineage2.1;lineage4.9 | 2 |
| lineage1.1.3.3;lineage2.2.1;lineage3 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| lineage1 | 13 |
| lineage4;lineage6.2.1 | 1 |
| lineage1.2.2.2;lineage3;lineage4.4.1.1 | 1 |
| lineage1.2.2.2;lineage4.2 | 1 |
| lineage1.2.1.2.1;lineage4.5 | 1 |
| lineage1.1.3.2;lineage1.2.2.2 | 2 |
| lineage5.1.1;lineage6.3.1 | 1 |
| lineage1.1.1.1;lineage4.4.2 | 2 |
| La3;M.canetti;lineage2.1;lineage4.9 | 8 |
| lineage4.2.2.1;lineage5 | 2 |
| lineage1.1.1;lineage2.2.1.1 | 1 |
| La1.2;La1.8.2 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| lineage4.7;lineage6.3.1 | 1 |
| lineage1.1.3;lineage4.3.3 | 1 |
| lineage4.1.2.1;lineage6.1.1 | 2 |
| lineage1.1.1.1;lineage4.1 | 1 |
| lineage4.1.2.1;lineage6.3.1 | 4 |
| lineage1.1;lineage4.1.2.1 | 1 |
| lineage1.2.2;lineage3.1.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage4.9 | 1 |
| lineage1.1.3.2;lineage4.3.4.2 | 1 |
| La1.7;lineage4.2 | 1 |
| lineage1.2.1.2.1;lineage4.3.4.1 | 1 |
| lineage1.1.2;lineage4.1.1.3 | 4 |
| lineage4.8;lineage5.1.1 | 2 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage1.2.2.2;lineage3.1.2.1 | 1 |
| lineage4.6.2.2;lineage6.1.2 | 1 |
| lineage1.1.3;lineage4 | 1 |
| lineage1.1.2;lineage2.2.1.1 | 2 |
| lineage1.1.3;lineage2.2.1 | 1 |
| lineage4.3.4.1 | 1 |
| La1.1;lineage1.2.2.2 | 1 |
| La3;lineage4.9 | 2 |
| La1.2;La2 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| lineage1.1.1;lineage1.2.1.2.1 | 1 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 1 |
| lineage6.1.1;lineage6.3.1 | 1 |
| lineage2.2.1.2;lineage4.3.4.2 | 1 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| La1.2;lineage3 | 1 |
| La1.2;lineage4.9 | 1 |
| lineage3.1.2;lineage4.9 | 1 |
| lineage1.2.2.2;lineage4.1.2.1 | 1 |
| lineage1.1.2;lineage1.1.3.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3 | 2 |
| lineage1.1.1.1;lineage1.1.2 | 1 |
| lineage4.3.4.1;lineage4.6.2.2;lineage6.1.2 | 1 |
| lineage1.1.1.1;lineage2.2 | 2 |
| lineage4.1.3;lineage5.1.1 | 1 |
| lineage1.2.1.1;lineage4 | 2 |
| lineage1.2.2.2;lineage4.1.1.1 | 2 |
| lineage4.3.4.1;lineage6.1.1 | 1 |
| lineage1.1.3.1;lineage2.2.1.2 | 1 |
| lineage1.2.1.2.1;lineage1.2.2 | 1 |
| lineage1.1.2;lineage4.3.3 | 1 |
| La2;lineage4 | 1 |
| lineage4.3.4.2;lineage6.1.3 | 1 |
| lineage1.1.2;lineage1.2.2.2;lineage4 | 1 |
| La1.2.BCG;lineage4 | 1 |
| lineage1;lineage3 | 1 |
| M.canetti;lineage2.1 | 1 |
| lineage4.6.2.2;lineage6.3.1 | 1 |
| La1.2;La1.7.1 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage1.1.1;lineage1.1.3.1;lineage4.2.2;lineage5.1;lineage6 | 1 |
| lineage4.1.1.3 | 1 |
| La3;lineage2.2.1 | 3 |
| lineage2.2.1.1;lineage6.1.3 | 1 |
| lineage1.2.1.2;lineage4.5 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage1.2.2.2;lineage4.3.3 | 3 |
| lineage1.1.3.1;lineage1.2.1.2.1 | 1 |
| lineage1.1.1.1;lineage1.2.1.2.1 | 2 |
| lineage1.1.2;lineage3.1.1;lineage4.6.1.1 | 1 |
| La3;lineage4 | 2 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage4.1.2.1;lineage6.3.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
| lineage4.6.2.2;lineage6 | 1 |
| lineage5.1.1;lineage5.1.2 | 1 |
| lineage1.1.3;lineage4.2.2.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage4.2.2.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1 | 1 |
| lineage1.1.3.1;lineage4.3.3 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| lineage1.1.3.3;lineage4 | 2 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2 | 1 |
| lineage1.2.1.1;lineage4.1.1.1 | 1 |
| La1.7.1;La1.8.1 | 1 |
| lineage1.1;lineage1.2.2.2 | 1 |
| lineage3.1.1 | 1 |
| lineage1.2.1.2;lineage4 | 1 |
| lineage4.1.2.1;lineage4.6.2.2;lineage6.3.1 | 1 |
| lineage1.1.2;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage1.2.2.1;lineage4.3.4.2.1 | 1 |
| lineage1.1;lineage2.2.1 | 1 |
| lineage1.2.1.2;lineage3 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4.6.1 | 1 |
| lineage1.1.2;lineage4.2.2 | 1 |
| lineage1.2.2.2;lineage4.3.4.2.1 | 1 |
| lineage2.2.1.2 | 1 |
| lineage1.1.1.1;lineage4.1.2.1 | 1 |
| lineage1.1.1.1;lineage2.2.1;lineage4.2.2 | 1 |
| lineage1;lineage4.9 | 1 |
| lineage1.2.2.1;lineage4.1.1.1 | 1 |
| lineage2.2.2;lineage4 | 1 |
| lineage1.1.1;lineage4 | 1 |
| lineage1.1;lineage3.1.2 | 1 |
| lineage1.1.3.2;lineage3.1.2 | 1 |
| lineage1.2.2.1;lineage4.4.1.1 | 2 |
| lineage2.2.1;lineage5 | 1 |
| La1.8;lineage1.2.2.2 | 1 |
| lineage2.2.1.1;lineage4.1;lineage6.1.2 | 1 |
| lineage1.2.2.2;lineage2.2.1;lineage3;lineage4 | 1 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage4.1.2.1;lineage5.3 | 1 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La1.2.BCG;La1.8.1;lineage4 | 1 |
| lineage4;lineage6.2.2 | 1 |
| lineage1.1.3.2;lineage2.2.1 | 1 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| lineage2.2.1;lineage6.1.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| lineage1.1;lineage3.1.1;lineage4;lineage5.1 | 1 |
| La1.2.BCG;lineage1.1.1 | 1 |
| lineage1.2.1.2.1;lineage4.1.2.1 | 1 |
| lineage1.1.2;lineage2.2.1;lineage4 | 1 |
| La1.7.1;La1.7.X-unk4 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4;lineage6.1.3 | 1 |
| lineage1.2.2.2;lineage4.8.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 29428 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
This table has 29428 rows and could cause your browser to crash if rendered.
