lineage | Count |
---|---|
lineage3 | 9 |
lineage4.3 | 1 |
lineage2.2.1.2 | 1 |
lineage2.2.1.1 | 3 |
lineage2.2.1 | 17 |
lineage3.1.2 | 1 |
lineage3.1.2.1 | 2 |
lineage1.1.2 | 1 |
lineage3;lineage1.1.2 | 1 |
lineage1.2.2.2 | 1 |
lineage4.8 | 20 |
lineage4.3.3 | 8 |
lineage4.1.2 | 3 |
lineage2.2 | 52 |
lineage3;lineage1.1.3.1 | 1 |
lineage4.1.2.1 | 4 |
lineage4.2.1 | 33 |
lineage4.2.1.1 | 5 |
lineage4 | 5 |
lineage4.3.3;lineage2.2.1 | 1 |
lineage4.1 | 1 |
lineage4.7 | 1 |
lineage1.1.3.3 | 1 |
spoligotype | Count |
---|---|
None | 172 |
ID | Drug resistance | Lineage | Country iso2 | ERR4797031 | HR-TB | lineage3 | in | ERR4797019 | Pre-XDR-TB | lineage4.3 | in | ERR4796977 | MDR-TB | lineage2.2.1.2 | in | ERR4797047 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4830939 | Pre-XDR-TB | lineage2.2.1 | np | ERR4796895 | MDR-TB | lineage3 | in | ERR4797034 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797042 | MDR-TB | lineage3.1.2 | in | ERR4797088 | Other | lineage3.1.2.1 | in | ERR4797113 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797070 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797055 | Sensitive | lineage3 | in | ERR4797041 | Sensitive | lineage3 | in | ERR4797069 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796951 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797107 | Pre-XDR-TB | lineage3 | in | ERR4797050 | MDR-TB | lineage1.1.2 | in | ERR4831078 | Sensitive | lineage2.2.1 | np | ERR4796973 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796996 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797080 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797100 | MDR-TB | lineage3;lineage1.1.2 | in | ERR4797052 | MDR-TB | lineage1.2.2.2 | in | ERR4797068 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797074 | Pre-XDR-TB | lineage4.8 | in | ERR4797140 | Sensitive | lineage3 | in | ERR4797003 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797105 | Pre-XDR-TB | lineage2.2.1.1 | in | ERR4797103 | Sensitive | lineage4.3.3 | in | ERR4797059 | Pre-XDR-TB | lineage4.1.2 | in | ERR4796950 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797126 | Other | lineage3 | in | ERR4797044 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796934 | Sensitive | lineage4.3.3 | in | ERR4831472 | Pre-XDR-TB | lineage3 | None | ERR10969211 | Sensitive | lineage2.2 | None | ERR10796641 | MDR-TB | lineage2.2 | None | ERR4797011 | Sensitive | lineage3;lineage1.1.3.1 | in | SRR16087925 | HR-TB | lineage2.2 | None | SRR16088101 | Sensitive | lineage4.1.2.1 | None | SRR16087928 | MDR-TB | lineage4.1.2.1 | None | SRR16088127 | Other | lineage4.2.1 | None | SRR16088129 | HR-TB | lineage4.3.3 | None | SRR16088069 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088138 | Sensitive | lineage4.8 | None | SRR16088131 | Sensitive | lineage2.2 | None | SRR16088133 | HR-TB | lineage4.2.1.1 | None | SRR16088135 | Sensitive | lineage4.8 | None | SRR16088140 | Sensitive | lineage2.2 | None | SRR16088141 | HR-TB | lineage4 | None | SRR16088136 | Sensitive | lineage4.2.1 | None | SRR16088150 | Sensitive | lineage2.2 | None | SRR16088148 | Other | lineage4.8 | None | SRR16088147 | Sensitive | lineage2.2 | None | SRR16088142 | HR-TB | lineage4.2.1 | None | SRR16088144 | Sensitive | lineage2.2 | None | SRR16088151 | HR-TB | lineage2.2 | None | SRR16088221 | Other | lineage2.2 | None | SRR16088222 | MDR-TB | lineage2.2 | None | SRR16088228 | Other | lineage4.8 | None | SRR16088226 | HR-TB | lineage4.8 | None | SRR16088224 | Sensitive | lineage2.2 | None | SRR16088233 | RR-TB | lineage4.2.1.1 | None | SRR16088225 | HR-TB | lineage2.2 | None | SRR16088231 | Sensitive | lineage4.2.1.1 | None | SRR16088232 | HR-TB | lineage2.2 | None | SRR16088234 | HR-TB | lineage2.2 | None | SRR16088239 | Sensitive | lineage4 | None | SRR16088235 | HR-TB | lineage2.2 | None | SRR16088236 | Sensitive | lineage4.8 | None | SRR16088243 | Sensitive | lineage4.1.2.1 | None | SRR16088244 | Other | lineage4 | None | SRR16088245 | Sensitive | lineage4.8 | None | SRR16088247 | Sensitive | lineage4.2.1.1 | None | SRR16088264 | Pre-XDR-TB | lineage2.2 | None | SRR16088259 | Sensitive | lineage4.8 | None | SRR16088265 | Sensitive | lineage4 | None | SRR16088237 | Other | lineage4.3.3;lineage2.2.1 | None | SRR16088238 | Sensitive | lineage4.2.1 | None | SRR16088246 | Sensitive | lineage4.1.2 | None | SRR16088248 | Sensitive | lineage4.2.1.1 | None | SRR16088255 | Sensitive | lineage4 | None | SRR16088253 | Sensitive | lineage4.8 | None | SRR16088256 | Sensitive | lineage4.1.2 | None | SRR16088258 | Sensitive | lineage4.8 | None | SRR16088433 | Other | lineage4.8 | None | SRR16088430 | Sensitive | lineage4.3.3 | None | SRR16088435 | Sensitive | lineage4.3.3 | None | SRR16088431 | Sensitive | lineage4.8 | None | SRR16088436 | HR-TB | lineage2.2 | None | SRR16088434 | Sensitive | lineage4.8 | None | SRR16088439 | Sensitive | lineage4.8 | None | SRR16088437 | Other | lineage2.2 | None | SRR16088445 | Other | lineage2.2 | None | SRR16088442 | Sensitive | lineage4.2.1 | None | SRR16088446 | HR-TB | lineage4.3.3 | None | SRR16088444 | HR-TB | lineage2.2 | None | SRR16088438 | Sensitive | lineage2.2 | None | SRR16088441 | Sensitive | lineage4.8 | None | SRR16088447 | Sensitive | lineage4.8 | None | SRR16088448 | HR-TB | lineage2.2 | None | SRR16088450 | Sensitive | lineage4.8 | None | SRR16088449 | Sensitive | lineage4.2.1 | None | SRR16088452 | Other | lineage2.2 | None | SRR16088539 | Sensitive | lineage2.2 | None | SRR16088451 | Sensitive | lineage4.3.3 | None | SRR16088453 | Sensitive | lineage4.1.2.1 | None | SRR23310847 | MDR-TB | lineage2.2 | None | SRR23086729 | Pre-XDR-TB | lineage4.8 | None | SRR23310825 | MDR-TB | lineage2.2 | None | SRR23310870 | MDR-TB | lineage2.2 | None | SRR23310904 | MDR-TB | lineage4.2.1 | None | SRR23310898 | MDR-TB | lineage2.2 | None | SRR23310867 | MDR-TB | lineage2.2 | None | SRR23310896 | MDR-TB | lineage2.2 | None | SRR23310897 | MDR-TB | lineage4.2.1 | None | SRR23310921 | MDR-TB | lineage2.2 | None | SRR23310920 | MDR-TB | lineage2.2 | None | SRR23310924 | Pre-XDR-TB | lineage4.2.1 | None | SRR23310922 | Pre-XDR-TB | lineage2.2 | None | SRR23310929 | MDR-TB | lineage2.2 | None | SRR23310927 | Pre-XDR-TB | lineage2.2 | None | SRR23310931 | Pre-XDR-TB | lineage4.2.1 | None | SRR23310936 | Pre-XDR-TB | lineage2.2 | None | SRR23310933 | MDR-TB | lineage4.2.1 | None | SRR23310932 | XDR-TB | lineage4.2.1 | None | SRR23310939 | Pre-XDR-TB | lineage4.3.3 | None | SRR23310934 | MDR-TB | lineage2.2 | None | SRR23310938 | MDR-TB | lineage4.2.1 | None | SRR23310946 | Sensitive | lineage2.2 | None | SRR23310948 | MDR-TB | lineage4.2.1 | None | SRR23310942 | Pre-XDR-TB | lineage4.2.1 | None | SRR23310961 | Sensitive | lineage4.1 | None | SRR23310979 | MDR-TB | lineage2.2 | None | SRR23310962 | Sensitive | lineage4.8 | None | SRR23310966 | Sensitive | lineage2.2 | None | SRR23310980 | MDR-TB | lineage4.2.1 | None | SRR23310986 | MDR-TB | lineage2.2 | None | SRR23310987 | MDR-TB | lineage4.2.1 | None | SRR23310981 | MDR-TB | lineage4.2.1 | None | SRR23310985 | MDR-TB | lineage4.2.1 | None | SRR23310998 | MDR-TB | lineage4.2.1 | None | SRR23310995 | Pre-XDR-TB | lineage2.2 | None | SRR23311002 | MDR-TB | lineage4.2.1 | None | SRR23310993 | Pre-XDR-TB | lineage4.2.1 | None | SRR23310994 | MDR-TB | lineage4.2.1 | None | SRR23311001 | Pre-XDR-TB | lineage2.2 | None | SRR23311003 | MDR-TB | lineage4.2.1 | None | SRR23311005 | MDR-TB | lineage2.2 | None | SRR23311007 | MDR-TB | lineage4.2.1 | None | SRR23310999 | MDR-TB | lineage4.2.1 | None | SRR23311011 | Pre-XDR-TB | lineage4.2.1 | None | SRR23311009 | MDR-TB | lineage2.2 | None | SRR23311017 | Sensitive | lineage4.7 | None | SRR23311015 | MDR-TB | lineage4.2.1 | None | SRR23311013 | MDR-TB | lineage4.2.1 | None | SRR23311014 | MDR-TB | lineage4.2.1 | None | SRR23311024 | MDR-TB | lineage4.2.1 | None | SRR23311016 | MDR-TB | lineage2.2 | None | SRR23311021 | MDR-TB | lineage4.2.1 | None | SRR23311018 | Pre-XDR-TB | lineage2.2 | None | SRR23311025 | MDR-TB | lineage2.2 | None | SRR23311062 | MDR-TB | lineage4.2.1 | None | SRR23311026 | MDR-TB | lineage2.2 | None | SRR23311050 | MDR-TB | lineage2.2 | None | SRR23311027 | MDR-TB | lineage2.2 | None | ERR4797015 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796954 | MDR-TB | lineage3.1.2.1 | in | ERR4796829 | Sensitive | lineage3 | in | ERR4797156 | Pre-XDR-TB | lineage2.2.1 | in | ERR4797051 | Pre-XDR-TB | lineage2.2.1 | in | ERR4796958 | Other | lineage1.1.3.3 | in |
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