Rv2428 - c.-239C>T
Drug resistance types
226 Sensitive
5 RR-TB
19 HR-TB
10 MDR-TB
4 Pre-XDR-TB
0 XDR-TB
23 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.2.1 | 1 |
| La1.8.1 | 2 |
| lineage4.3.4.2.1 | 44 |
| lineage4.3.4.1 | 5 |
| lineage4.1.2 | 11 |
| lineage1.1.3.2 | 23 |
| lineage4.1.1.3.1 | 2 |
| lineage2.2.2 | 1 |
| lineage4.2.2.1 | 1 |
| lineage6;lineage5.1;lineage4.2.2;lineage1.1.3.1;lineage1.1.1 | 1 |
| lineage4.9;lineage4.3.4.2.1;lineage1.1.3.2 | 1 |
| lineage4.1.2.1 | 3 |
| lineage3.1.1 | 25 |
| lineage4.1.1 | 4 |
| lineage4.8.2 | 1 |
| lineage4.8.1 | 3 |
| lineage3.1.2 | 2 |
| lineage3 | 18 |
| lineage4.6.2.2 | 1 |
| lineage4.8 | 8 |
| lineage1.2.2.1 | 8 |
| lineage4.3.3 | 1 |
| lineage4.4.1.1 | 2 |
| lineage1.1.2 | 11 |
| lineage4.9 | 3 |
| lineage6.2.2;lineage4 | 1 |
| lineage2.2.1 | 36 |
| lineage7 | 13 |
| lineage2.2.1.1 | 1 |
| lineage6.1.1 | 1 |
| lineage4.2.2.2 | 3 |
| lineage6 | 2 |
| lineage1.1.1 | 1 |
| lineage4.3.2 | 1 |
| lineage4.3.2.1 | 15 |
| lineage5.1.4 | 1 |
| lineage4.9.1 | 10 |
| lineage4.4.1.1.1 | 1 |
| lineage1.2.2.2 | 4 |
| lineage4.3.4.2 | 2 |
| lineage4.1.2;lineage2.2.1 | 1 |
| lineage4.3.2.1;lineage3.1.1 | 1 |
| lineage4.3.4.2.1;lineage4.3.4.1 | 1 |
| lineage4.1.1.3 | 5 |
| lineage4.7 | 1 |
| lineage1.1.3 | 1 |
| lineage1.2.2 | 1 |
| lineage4.6.3 | 1 |
| lineage4.6 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 287 |
Geographic prevalence
Country level data for this variant is available for 219 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR7755743 | MDR-TB | lineage4.2.1 | None | SRR1791947 | Other | La1.8.1 | None | ERR036188 | MDR-TB | lineage4.3.4.2.1 | mw | ERR036192 | Sensitive | lineage4.3.4.2.1 | mw | ERR036196 | Sensitive | lineage4.3.4.1 | mw | ERR036200 | Sensitive | lineage4.1.2 | None | ERR036206 | Sensitive | lineage4.3.4.2.1 | mw | ERR036217 | Sensitive | lineage1.1.3.2 | mw | ERR036226 | HR-TB | lineage4.3.4.2.1 | mw | ERR036230 | Sensitive | lineage1.1.3.2 | mw | ERR037519 | Sensitive | lineage1.1.3.2 | mw | ERR037512 | Sensitive | lineage4.3.4.2.1 | mw | ERR037522 | HR-TB | lineage4.3.4.2.1 | mw | ERR037545 | Sensitive | lineage4.3.4.2.1 | mw | ERR038296 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | SRR125298 | HR-TB | lineage2.2.2 | None | ERR025434 | Sensitive | lineage4.2.2.1 | nl | ERR028317 | Sensitive | lineage6;lineage5.1;lineage4.2.2;lineage1.1.3.1;lineage1.1.1 | None | ERR036197 | Sensitive | lineage4.3.4.2.1 | mw | ERR036199 | Sensitive | lineage4.3.4.2.1 | mw | ERR036203 | HR-TB | lineage4.3.4.2.1 | mw | ERR036211 | Other | lineage4.9;lineage4.3.4.2.1;lineage1.1.3.2 | None | ERR036238 | Sensitive | lineage4.3.4.2.1 | mw | ERR036241 | Sensitive | lineage4.3.4.2.1 | mw | ERR036249 | HR-TB | lineage4.1.2.1 | mw | ERR037476 | Sensitive | lineage1.1.3.2 | mw | ERR037521 | Sensitive | lineage1.1.3.2 | mw | ERR040092 | Sensitive | lineage3.1.1 | None | ERR046740 | Sensitive | lineage4.1.1 | None | ERR046734 | Sensitive | lineage4.1.1 | gb | ERR046748 | Other | La1.8.1 | gb | ERR046755 | Sensitive | lineage4.8.2 | gb | ERR046772 | Sensitive | lineage3.1.1 | gb | ERR046777 | HR-TB | lineage4.8.1 | gb | ERR046786 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR046810 | Sensitive | lineage3.1.2 | None | ERR046812 | Sensitive | lineage3 | None | ERR046807 | Sensitive | lineage3 | None | ERR046809 | Sensitive | lineage3 | None | ERR046826 | Sensitive | lineage3 | None | ERR046834 | HR-TB | lineage4.6.2.2 | gb | ERR046827 | Sensitive | lineage3 | None | ERR046833 | Sensitive | lineage4.8 | gb | ERR046848 | Sensitive | lineage1.2.2.1 | gb | ERR046871 | Sensitive | lineage4.3.4.2.1 | gb | ERR046874 | Sensitive | lineage4.1.2.1 | gb | ERR046887 | Sensitive | lineage4.3.3 | gb | ERR046897 | Sensitive | lineage4.4.1.1 | gb | ERR046898 | Sensitive | lineage1.2.2.1 | gb | ERR046900 | Sensitive | lineage1.1.2 | gb | ERR046899 | Sensitive | lineage4.8 | None | ERR046903 | Pre-XDR-TB | lineage4.8 | gb | ERR046907 | Sensitive | lineage1.1.2 | gb | ERR046909 | Sensitive | lineage4.9 | None | ERR046906 | Sensitive | lineage4.1.1 | gb | ERR046915 | Sensitive | lineage1.1.2 | gb | SRR2100080 | Sensitive | lineage3.1.2 | None | SRR2100070 | Sensitive | lineage4.1.1 | None | SRR2100088 | Sensitive | lineage3 | None | SRR2100068 | Sensitive | lineage3.1.1 | None | SRR2100092 | Sensitive | lineage1.1.2 | None | SRR2100089 | Sensitive | lineage3 | None | SRR2100082 | Sensitive | lineage3 | None | ERR233367 | Sensitive | lineage6.2.2;lineage4 | None | SRR2467265 | Sensitive | lineage3 | None | SRR2469374 | Sensitive | lineage4.8 | None | ERR181440 | Sensitive | lineage2.2.1 | dj | ERR1200618 | Sensitive | lineage7 | None | ERR233361 | Sensitive | lineage2.2.1.1 | None | ERR233362 | Sensitive | lineage6.1.1 | sn | ERR1200639 | Sensitive | lineage7 | et | SRR2024961 | Pre-XDR-TB | lineage2.2.1 | cn | ERR1200637 | Sensitive | lineage4.2.2.2 | et | ERR233368 | Sensitive | lineage6 | None | SRR4034055 | Sensitive | lineage2.2.1 | za | ERR1200631 | Sensitive | lineage7 | et | ERR1200620 | MDR-TB | lineage4.2.2.2 | et | ERR233363 | Sensitive | lineage1.1.1 | None | SRR4034438 | Other | lineage4.3.2 | None | SRR4034069 | Sensitive | lineage2.2.1 | za | SRR4034099 | Sensitive | lineage2.2.1 | za | SRR4033726 | Sensitive | lineage2.2.1 | za | ERR233369 | Other | lineage4.8 | et | SRR4033253 | Sensitive | lineage4.8.1 | za | SRR4033194 | RR-TB | lineage2.2.1 | za | SRR4033131 | Sensitive | lineage4.1.2 | None | SRR4033152 | RR-TB | lineage2.2.1 | za | SRR4033158 | RR-TB | lineage2.2.1 | za | SRR4034363 | HR-TB | lineage4.1.2 | None | SRR4033201 | RR-TB | lineage2.2.1 | za | SRR4034218 | Sensitive | lineage4.3.2.1 | None | SRR4033258 | Sensitive | lineage4.8.1 | None | SRR4033313 | Sensitive | lineage2.2.1 | None | SRR4035728 | Sensitive | lineage4.1.2 | za | ERR1200629 | Sensitive | lineage1.2.2.1 | et | SRR4033366 | Sensitive | lineage2.2.1 | za | SRR4033535 | Sensitive | lineage4.3.2.1 | za | ERR233353 | Sensitive | lineage1.2.2.1 | et | SRR4035507 | RR-TB | lineage3 | za | SRR4035549 | MDR-TB | lineage3 | None | ERR234126 | Sensitive | lineage2.2.1 | cn | SRR4035735 | Sensitive | lineage4.1.2 | None | ERR234125 | Sensitive | lineage2.2.1 | cn | SRR4035752 | HR-TB | lineage4.1.2 | None | ERR234139 | Sensitive | lineage2.2.1 | None | ERR234128 | Sensitive | lineage2.2.1 | cn | ERR234145 | Sensitive | lineage5.1.4 | None | ERR234138 | Sensitive | lineage2.2.1 | cn | SRR4035818 | Sensitive | lineage4.1.2 | za | SRR4035878 | Sensitive | lineage4.3.2.1 | za | SRR4035879 | Sensitive | lineage4.3.2.1 | za | SRR4035877 | Sensitive | lineage4.3.2.1 | za | ERR245653 | Sensitive | lineage4.9.1 | mw | SRR4035883 | Sensitive | lineage4.3.2.1 | za | SRR4035929 | Sensitive | lineage4.3.2.1 | za | SRR4035932 | Sensitive | lineage4.3.2.1 | za | SRR4035980 | Sensitive | lineage4.4.1.1.1 | za | SRR4035886 | Sensitive | lineage4.3.2.1 | za | ERR245651 | MDR-TB | lineage1.2.2.2 | mw | ERR245654 | Sensitive | lineage1.1.3.2 | mw | ERR245655 | Sensitive | lineage2.2.1 | mw | ERR245648 | Other | lineage1.1.3.2 | mw | ERR245658 | Sensitive | lineage4.9.1 | mw | ERR245657 | Sensitive | lineage1.1.3.2 | mw | SRR4037487 | Sensitive | lineage4.3.2.1 | za | ERR245668 | Sensitive | lineage3.1.1 | mw | ERR245659 | Other | lineage4.9.1 | mw | ERR245662 | Sensitive | lineage1.2.2.1 | None | ERR245661 | Sensitive | lineage4.3.4.2.1 | mw | ERR245664 | Sensitive | lineage4.3.4.2.1 | mw | ERR245665 | Sensitive | lineage4.3.4.2.1 | mw | ERR245666 | Sensitive | lineage4.3.4.2 | mw | ERR245673 | Sensitive | lineage4.3.4.2.1 | mw | ERR245679 | Sensitive | lineage1.1.3.2 | mw | ERR245682 | Other | lineage3 | mw | ERR245670 | MDR-TB | lineage1.2.2.2 | mw | ERR245675 | Sensitive | lineage1.1.2 | None | ERR245678 | Other | lineage3 | mw | ERR245680 | Sensitive | lineage2.2.1 | mw | ERR245676 | Sensitive | lineage3.1.1 | mw | ERR245674 | Sensitive | lineage1.1.3.2 | mw | ERR245677 | Sensitive | lineage1.1.3.2 | mw | ERR245683 | Sensitive | lineage4.3.4.2.1 | mw | ERR245690 | Sensitive | lineage4.3.4.1 | mw | ERR245688 | Sensitive | lineage3.1.1 | mw | ERR245689 | Sensitive | lineage3.1.1 | mw | ERR245686 | Other | lineage4.3.4.2 | mw | SRR4037534 | Sensitive | lineage4.3.2.1 | za | ERR245692 | Sensitive | lineage2.2.1 | mw | ERR245715 | Sensitive | lineage3.1.1 | mw | SRR4037537 | Sensitive | lineage4.3.2.1 | za | ERR245691 | Sensitive | lineage1.1.2 | mw | ERR245703 | Sensitive | lineage1.1.3.2 | mw | ERR245696 | Sensitive | lineage2.2.1 | mw | ERR245698 | Sensitive | lineage1.1.2 | mw | ERR245708 | Sensitive | lineage4.3.4.2.1 | mw | ERR245716 | Sensitive | lineage2.2.1 | None | ERR245707 | Sensitive | lineage4.3.4.2.1 | mw | ERR245709 | Other | lineage4.3.4.2.1 | mw | ERR245713 | Sensitive | lineage3.1.1 | mw | SRR4037574 | Sensitive | lineage4.3.2.1 | za | ERR245710 | Sensitive | lineage2.2.1 | mw | ERR245714 | Sensitive | lineage4.9.1 | mw | ERR245712 | Sensitive | lineage4.9.1 | mw | ERR245726 | Sensitive | lineage3.1.1 | mw | ERR245719 | Sensitive | lineage4.9.1 | mw | ERR245717 | Sensitive | lineage1.1.3.2 | mw | ERR245718 | HR-TB | lineage4.3.4.2.1 | mw | ERR245722 | Other | lineage3 | mw | ERR245724 | Sensitive | lineage4.3.4.2.1 | mw | ERR245720 | Sensitive | lineage1.1.3.2 | mw | ERR245734 | Sensitive | lineage1.1.3.2 | mw | ERR245725 | HR-TB | lineage4.3.4.2.1 | mw | ERR245723 | Sensitive | lineage2.2.1 | mw | ERR245727 | Sensitive | lineage1.2.2.1 | mw | ERR245729 | Other | lineage4.3.4.2.1 | mw | ERR245732 | Sensitive | lineage3.1.1 | mw | ERR245728 | Sensitive | lineage2.2.1 | mw | ERR245730 | Sensitive | lineage4.3.4.2.1 | mw | ERR245736 | Sensitive | lineage4.9 | mw | ERR245738 | Sensitive | lineage4.3.4.2.1 | mw | ERR245742 | Sensitive | lineage1.1.2 | mw | ERR245740 | Sensitive | lineage4.1.2 | None | ERR245761 | Sensitive | lineage1.1.3.2 | mw | ERR245745 | Sensitive | lineage4.3.4.1 | mw | ERR245749 | Sensitive | lineage4.3.4.2.1 | mw | ERR245764 | HR-TB | lineage3.1.1 | None | ERR245754 | Sensitive | lineage4.1.2;lineage2.2.1 | mw | ERR245758 | Other | lineage4.9.1 | None | ERR245757 | HR-TB | lineage3.1.1 | mw | ERR245766 | Sensitive | lineage3.1.1 | mw | ERR245755 | Sensitive | lineage4.3.4.2.1 | mw | ERR245763 | Sensitive | lineage1.1.3.2 | mw | ERR245774 | HR-TB | lineage4.1.2.1 | mw | ERR245782 | Sensitive | lineage1.1.3.2 | mw | ERR245770 | Sensitive | lineage4.3.4.2.1 | mw | ERR245780 | Sensitive | lineage4.3.4.2.1 | mw | ERR245793 | Other | lineage3 | mw | ERR245779 | Sensitive | lineage4.3.4.2.1 | mw | ERR245783 | Sensitive | lineage2.2.1 | mw | ERR245778 | Sensitive | lineage4.3.4.2.1 | mw | ERR245784 | Sensitive | lineage1.1.3.2 | mw | ERR245781 | Sensitive | lineage1.1.3.2 | mw | ERR245789 | Sensitive | lineage3.1.1 | mw | ERR245785 | Sensitive | lineage4.9 | mw | ERR245799 | Sensitive | lineage4.3.4.1 | mw | ERR245788 | Sensitive | lineage4.3.4.2.1 | mw | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR245791 | Sensitive | lineage4.1.2 | mw | ERR245786 | Sensitive | lineage4.1.2 | mw | ERR245787 | Sensitive | lineage4.3.4.2.1 | mw | ERR245795 | Sensitive | lineage4.3.2.1;lineage3.1.1 | None | ERR245792 | HR-TB | lineage3.1.1 | mw | ERR245800 | Sensitive | lineage4.4.1.1 | mw | ERR245805 | HR-TB | lineage3.1.1 | mw | ERR245796 | Sensitive | lineage3.1.1 | mw | ERR245798 | Sensitive | lineage4.3.4.2.1 | mw | ERR245797 | Sensitive | lineage4.3.4.2.1;lineage4.3.4.1 | mw | ERR245804 | Sensitive | lineage4.1.1.3 | mw | ERR245803 | Sensitive | lineage3.1.1 | mw | ERR245802 | Sensitive | lineage4.8 | mw | ERR245812 | Sensitive | lineage4.3.4.2.1 | mw | ERR245806 | Sensitive | lineage4.8 | mw | ERR245816 | Sensitive | lineage4.1.2 | None | ERR245801 | Other | lineage4.3.4.2.1 | None | ERR245807 | Sensitive | lineage4.7 | mw | ERR245809 | Sensitive | lineage4.3.4.1 | None | ERR245817 | Sensitive | lineage1.1.3.2 | None | ERR245815 | Sensitive | lineage4.3.4.2.1 | None | ERR245821 | Other | lineage4.3.4.2.1 | None | ERR245819 | Other | lineage3.1.1 | None | ERR245820 | Sensitive | lineage1.1.3.2 | None | ERR245811 | Sensitive | lineage1.2.2.1 | mw | ERR245823 | Sensitive | lineage4.1.1.3 | None | ERR245825 | Sensitive | lineage1.1.3 | None | ERR245824 | Sensitive | lineage4.3.4.2.1 | None | ERR245813 | Sensitive | lineage1.1.2 | mw | ERR245829 | MDR-TB | lineage1.2.2.2 | mw | ERR245828 | Sensitive | lineage4.1.1.3 | mw | ERR245826 | Sensitive | lineage4.3.4.2.1 | mw | ERR245834 | Sensitive | lineage2.2.1 | mw | ERR245831 | Sensitive | lineage2.2.1 | mw | ERR245835 | Other | lineage4.9.1 | mw | ERR245832 | HR-TB | lineage3.1.1 | mw | ERR245833 | Sensitive | lineage1.2.2.2 | mw | ERR245839 | Sensitive | lineage3.1.1 | mw | ERR245827 | Sensitive | lineage3.1.1 | mw | ERR245845 | Sensitive | lineage4.9.1 | mw | ERR245830 | Other | lineage3 | mw | ERR245836 | MDR-TB | lineage1.2.2 | mw | ERR245838 | HR-TB | lineage3.1.1 | mw | ERR245844 | Sensitive | lineage1.1.3.2 | mw | ERR245840 | Sensitive | lineage3.1.1 | mw | ERR245837 | Sensitive | lineage2.2.1 | mw | ERR245843 | Sensitive | lineage1.2.2.1 | mw | ERR245846 | Sensitive | lineage2.2.1 | None | ERR245841 | Sensitive | lineage4.1.1.3 | mw | ERR245848 | Sensitive | lineage4.3.4.2.1 | mw | SRR4037820 | Sensitive | lineage2.2.1 | za | ERR245847 | Sensitive | lineage4.9.1 | mw | ERR245842 | Sensitive | lineage4.1.1.3 | mw | ERR245849 | Other | lineage3 | mw | SRR4037945 | Sensitive | lineage2.2.1 | None | SRR4037914 | Sensitive | lineage4.3.2.1 | za | SRR4037926 | Sensitive | lineage4.3.2.1 | None | ERR1200608 | Sensitive | lineage7 | et | ERR1200635 | Sensitive | lineage7 | et | ERR233354 | Sensitive | lineage7 | None | ERR1200615 | Sensitive | lineage4.8 | et | ERR1200606 | Sensitive | lineage7 | et | ERR1200634 | Sensitive | lineage7 | et | ERR233351 | Sensitive | lineage1.1.2 | et | ERR1200625 | Sensitive | lineage7 | et | ERR1200604 | Sensitive | lineage7 | et | ERR1200626 | Sensitive | lineage1.1.2 | et | ERR233350 | MDR-TB | lineage4.2.2.2 | et | ERR1200623 | Sensitive | lineage7 | et | ERR233370 | Other | lineage2.2.1 | None | ERR1200610 | Sensitive | lineage7 | et | ERR233366 | Sensitive | lineage6 | None | SRR611425 | Sensitive | lineage2.2.1 | None | SRR671777 | Sensitive | lineage2.2.1 | cn | ERR1200611 | Other | lineage4.6.3 | et | SRR671780 | MDR-TB | lineage2.2.1 | cn | SAMN03647262 | Sensitive | lineage3 | None | ERR1200621 | Sensitive | lineage4.6 | et | ERR1200633 | Sensitive | lineage7 | et |
|---|
