Rv2428 - c.-88G>A
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
11885 Sensitive
411 RR-TB
1184 HR-TB
1866 MDR-TB
1090 Pre-XDR-TB
201 XDR-TB
1994 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage3 | 12961 |
| lineage3.1.2 | 1328 |
| lineage3.1.1 | 2140 |
| lineage3;lineage4.5 | 4 |
| lineage3;lineage4 | 44 |
| lineage3.1.2.1 | 925 |
| lineage3.1.3 | 383 |
| lineage3.1 | 268 |
| lineage1.1.2;lineage3.1.1;lineage4.3.4 | 1 |
| lineage3.1.2.2 | 118 |
| lineage2.2.1;lineage3 | 87 |
| lineage3;lineage4.8 | 13 |
| lineage3.1.1;lineage4.3.4.2 | 2 |
| lineage3.1.1;lineage4 | 22 |
| 7 | |
| lineage3.1.2;lineage4 | 5 |
| lineage2.2.1.1;lineage3 | 11 |
| lineage3.1.2;lineage4.3.3 | 3 |
| lineage3;lineage4.2.2 | 1 |
| lineage3;lineage4.1.2.1 | 6 |
| lineage3;lineage4.2.2.2 | 6 |
| lineage1.1.1;lineage1.1.2;lineage4.6.1 | 1 |
| lineage3;lineage4.3.4.1 | 1 |
| lineage3;lineage4.2;lineage4.6.1.2 | 1 |
| lineage1.1.3.2 | 1 |
| lineage3.1.2.1;lineage4 | 5 |
| lineage2.2.1.1;lineage3;lineage4.1.1.1 | 1 |
| lineage1.2.2.2;lineage3 | 11 |
| lineage3.1.1;lineage4.3.4.2.1 | 5 |
| lineage3;lineage4.6.2.2 | 1 |
| lineage2.2.1;lineage3.1.2 | 13 |
| lineage3;lineage4.7 | 3 |
| lineage1.1.3.1;lineage3 | 4 |
| lineage3.1.1;lineage4.8 | 1 |
| lineage3.1.2;lineage4.1.1 | 1 |
| lineage2.2.1.1;lineage3;lineage4 | 2 |
| lineage4.3.2.1;lineage4.9 | 2 |
| lineage3.1.1;lineage4.1.2.1 | 1 |
| lineage3;lineage4.2 | 2 |
| lineage3;lineage4.4 | 4 |
| lineage2.2.1.1;lineage3.1.2;lineage4.4 | 1 |
| lineage1.2.2.2;lineage3.1.2 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| lineage3.1.1;lineage4.2.2.2 | 4 |
| lineage3.1.2;lineage4.9 | 4 |
| lineage3;lineage4.9 | 11 |
| La1.1;lineage3 | 2 |
| lineage3.1.2;lineage4.2.2.2;lineage4.3.3 | 1 |
| lineage3.1.1;lineage4.1.1.3 | 2 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| lineage2.2 | 1 |
| lineage2.2.1;lineage3.1 | 2 |
| lineage3;lineage4.4.1.1 | 6 |
| lineage3.1.2;lineage4.8 | 3 |
| lineage2.2.1.2;lineage3 | 5 |
| lineage1.1.3.2;lineage3.1.1 | 3 |
| lineage1.1.2;lineage3 | 16 |
| lineage3.1.1;lineage4.6.3 | 2 |
| lineage1.1.3.1;lineage3.1.2 | 1 |
| lineage3;lineage4.1.1.2 | 1 |
| lineage3.1.2;lineage4.3.4.2.1 | 4 |
| lineage3.1.1;lineage3.1.3 | 2 |
| lineage2.2.1.1;lineage2.2.1.2;lineage3 | 1 |
| lineage1.1.2;lineage4.7 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage2.2.2;lineage3 | 1 |
| lineage3;lineage4.1.1.3 | 6 |
| lineage1.2.2.2;lineage3;lineage4.4.1.1 | 1 |
| lineage2.2.1;lineage3.1.1;lineage4 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2.1 | 1 |
| lineage3;lineage4.3.3 | 9 |
| lineage4.5 | 1 |
| lineage2.2;lineage3 | 3 |
| lineage1.1.2;lineage3.1.1 | 5 |
| lineage3.1.1;lineage4.6.1.1 | 2 |
| lineage4.1.2 | 1 |
| lineage3.1;lineage4.8 | 2 |
| lineage2.2.1;lineage3.1.3 | 1 |
| lineage3.1.3;lineage4 | 4 |
| lineage1.2.2.2;lineage3.1.2.1 | 1 |
| lineage3.1.1;lineage4.1.1.1 | 1 |
| lineage1.2.2;lineage3.1.2 | 1 |
| lineage3.1;lineage4.6.1.1 | 2 |
| lineage1.1.2;lineage3.1.1;lineage4.3;lineage4.6.1.1 | 1 |
| lineage1.2.2.2;lineage2.2.1;lineage3 | 2 |
| lineage1.1.3.3;lineage2.2.1;lineage3 | 1 |
| lineage1.1.2;lineage3.1.2 | 4 |
| lineage1.2.2.2;lineage2.2.1;lineage3.1.2;lineage4 | 1 |
| lineage2.2.1;lineage3.1.1;lineage4.2.2 | 1 |
| lineage3.1.2;lineage4.3.4.1 | 1 |
| lineage2.2.1.1;lineage3.1.2 | 3 |
| lineage3.1.2.1;lineage4.3.4.2 | 3 |
| lineage1;lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage1.1.2;lineage3.1.1;lineage4 | 2 |
| lineage1.1.3;lineage3 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2;lineage4.8 | 2 |
| lineage2.2.1;lineage3.1.1;lineage4.2.2.2;lineage4.3.3 | 1 |
| lineage3;lineage4.1.1.1 | 2 |
| lineage3;lineage4.6.2 | 1 |
| lineage2.2.1;lineage3.1.1;lineage4.2.2.2 | 2 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage3.1.2;lineage4.1.1.1 | 1 |
| lineage1;lineage3 | 2 |
| lineage3.1.2.1;lineage4.1.2 | 1 |
| lineage2.2.1;lineage3.1.2.1 | 5 |
| lineage1.1.3.1;lineage3.1 | 1 |
| lineage3.1.2;lineage4.5 | 1 |
| lineage3.1.1;lineage4.3.3 | 7 |
| lineage3.1;lineage9 | 1 |
| lineage2.2.1;lineage3;lineage4.1.2;lineage4.2.2;lineage4.9 | 1 |
| lineage3.1;lineage4 | 1 |
| lineage1.1.2;lineage3.1.1;lineage4.6.1.1 | 2 |
| lineage2.2.1;lineage3.1.2;lineage4.9 | 1 |
| lineage3;lineage4.3.4.2 | 4 |
| lineage4.1.2.1 | 2 |
| lineage3.1.3;lineage4.8.2 | 2 |
| lineage3.1.2;lineage4.3.2.1 | 2 |
| lineage3.1.1;lineage4.3.2.1 | 1 |
| lineage3.1.2;lineage4.1.1.3.1 | 1 |
| lineage3.1.1;lineage4.6.1.2 | 1 |
| lineage3.1.1;lineage4.4.1.1.1 | 1 |
| lineage3.1;lineage4.2.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1 | 1 |
| lineage3;lineage4.4.1.2 | 1 |
| lineage2.2.1;lineage3.1.1 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.2 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4 | 1 |
| lineage2.2.1;lineage3;lineage4 | 6 |
| lineage1.1.2;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage3;lineage4.3.2.1 | 1 |
| lineage1.2.1.2;lineage3 | 1 |
| lineage2.2.1;lineage3.1;lineage4.3.4.2.1 | 1 |
| lineage3;lineage4.3.4.2.1 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3.1.1;lineage4.6.1 | 1 |
| lineage4.9 | 1 |
| lineage2.2.1;lineage3;lineage4.8 | 1 |
| lineage3;lineage4.6.2.1 | 1 |
| lineage2.2.1;lineage3;lineage4.1.2.1 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| La1.7;lineage3 | 1 |
| lineage1.1.2;lineage2.2.1;lineage3 | 1 |
| lineage2.2.1.2;lineage3.1.2 | 1 |
| lineage1;lineage3.1.1;lineage4.2.2.2 | 1 |
| lineage2.2.1.2;lineage3.1.2.1 | 1 |
| La1.2;lineage3 | 1 |
| lineage2;lineage3 | 1 |
| lineage3.1.3;lineage4.1.1.1 | 1 |
| La3;lineage3 | 2 |
| lineage3;lineage4.1 | 1 |
| lineage1.2.1.2.1;lineage3 | 1 |
| lineage1.2.2.2 | 1 |
| lineage1.1;lineage3.1.2 | 1 |
| lineage1.1.3.2;lineage3.1.2 | 1 |
| lineage1.2.2.2;lineage2.2.1;lineage3;lineage4 | 1 |
| lineage1.1.3.1;lineage3;lineage4.4.2 | 1 |
| lineage1.1.2;lineage3.1.1;lineage4.3.4.2.1 | 1 |
| lineage2.2.1;lineage3;lineage4.1.1.3;lineage4.9 | 1 |
| lineage4.3.4.2 | 1 |
| lineage1.1.2;lineage3.1.2.1 | 1 |
| lineage2.2.1;lineage3;lineage4.3.2 | 1 |
| lineage3;lineage4.1.2 | 1 |
| lineage1.1.2 | 1 |
| lineage3.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 18631 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
This table has 18631 rows and could cause your browser to crash if rendered.
