lineage | Count |
---|---|
lineage4.5 | 4 |
lineage4.8 | 62 |
lineage4.1.2.1 | 38 |
lineage4.3.4 | 1 |
lineage4.8;lineage4.1.2.1 | 1 |
lineage3 | 16 |
lineage2.2.1 | 67 |
lineage4.6.2.2 | 4 |
La1.8.1 | 2 |
La1.8.2 | 1 |
lineage4.7 | 4 |
lineage4.3.4.1 | 7 |
lineage4.9 | 4 |
lineage1.2.2.1 | 1 |
lineage3.1.1 | 5 |
lineage4.3.3 | 23 |
lineage1.1.2 | 3 |
lineage4.1.2 | 6 |
lineage2.2.1.1 | 1 |
lineage4 | 5 |
lineage1.2.1.2.1 | 1 |
lineage4.6 | 2 |
lineage6.1.3 | 1 |
lineage6.2.3 | 1 |
lineage4.4.1.2 | 1 |
La1.7.X-unk4 | 1 |
lineage5.3 | 1 |
lineage1.2.1.1 | 2 |
lineage4.3.4.2 | 5 |
lineage4.1.1 | 1 |
lineage1.1.3.2 | 1 |
lineage4.3.2 | 1 |
lineage4.2.1.1 | 14 |
lineage4.4.1.1 | 2 |
lineage4.3.1 | 1 |
lineage4.2.1 | 18 |
La1.2.BCG | 2 |
lineage4;lineage2.2.1 | 1 |
lineage4.2.1;lineage2.2.1 | 1 |
lineage4.2.2.1 | 1 |
lineage4.2.2.2 | 2 |
lineage2.2 | 2 |
spoligotype | Count |
---|---|
None | 317 |
ID | Drug resistance | Lineage | Country iso2 | ERR11049380 | Sensitive | lineage4.5 | None | ERR11049033 | Sensitive | lineage4.8 | None | ERR11044843 | Sensitive | lineage4.1.2.1 | None | ERR10796633 | RR-TB | lineage4.3.4 | None | ERR11043782 | Sensitive | lineage4.8 | None | ERR11049468 | Sensitive | lineage4.8;lineage4.1.2.1 | None | ERR11044886 | Sensitive | lineage3 | None | ERR11044901 | Sensitive | lineage4.1.2.1 | None | ERR11044882 | HR-TB | lineage2.2.1 | None | ERR11049445 | Sensitive | lineage4.1.2.1 | None | ERR11049463 | Sensitive | lineage4.1.2.1 | None | ERR11049490 | Sensitive | lineage4.6.2.2 | None | ERR11049474 | Sensitive | lineage4.5 | None | ERR4627375 | Other | La1.8.1 | None | ERR4627360 | Other | La1.8.1 | None | ERR6140813 | Other | La1.8.2 | None | ERR11049847 | Sensitive | lineage4.8 | None | ERR11049874 | Sensitive | lineage4.7 | None | ERR11049884 | Sensitive | lineage4.3.4.1 | None | ERR11049897 | Sensitive | lineage4.9 | None | ERR11049930 | HR-TB | lineage1.2.2.1 | None | ERR11049899 | Sensitive | lineage4.8 | None | ERR11049912 | Sensitive | lineage3.1.1 | None | ERR11049916 | Sensitive | lineage3.1.1 | None | ERR11049917 | Sensitive | lineage4.9 | None | ERR11049922 | Sensitive | lineage4.3.4.1 | None | ERR11049915 | Sensitive | lineage4.1.2.1 | None | ERR11049927 | Sensitive | lineage4.8 | None | ERR11049931 | MDR-TB | lineage2.2.1 | None | ERR11049933 | Sensitive | lineage4.7 | None | ERR11049941 | Sensitive | lineage4.1.2.1 | None | ERR11049940 | Sensitive | lineage4.3.3 | None | ERR11049951 | Sensitive | lineage2.2.1 | None | ERR11049955 | HR-TB | lineage4.1.2.1 | None | ERR11049954 | Sensitive | lineage3 | None | ERR11049960 | Sensitive | lineage4.1.2.1 | None | ERR11049959 | Sensitive | lineage1.1.2 | None | ERR11049971 | Other | lineage4.8 | None | ERR11049961 | Sensitive | lineage4.1.2 | None | ERR11049963 | Sensitive | lineage4.3.4.1 | None | ERR11049965 | Other | lineage4.6.2.2 | None | ERR11049966 | Sensitive | lineage2.2.1.1 | None | ERR11049968 | Sensitive | lineage4.9 | None | ERR11049975 | HR-TB | lineage4.8 | None | ERR11049972 | Sensitive | lineage4.8 | None | ERR11049970 | Sensitive | lineage4 | None | ERR11049973 | Sensitive | lineage4.8 | None | ERR11049976 | Other | lineage3 | None | ERR11049979 | Sensitive | lineage4.8 | None | ERR11049982 | Sensitive | lineage4.1.2.1 | None | ERR11049988 | Sensitive | lineage1.2.1.2.1 | None | ERR11049983 | Sensitive | lineage3 | None | ERR11049989 | Sensitive | lineage4.6 | None | ERR11050008 | Sensitive | lineage4.3.3 | None | ERR11050031 | Sensitive | lineage4.6 | None | ERR11050012 | Sensitive | lineage3.1.1 | None | ERR11050024 | Sensitive | lineage4.8 | None | ERR11050028 | Sensitive | lineage3.1.1 | None | ERR11050030 | Other | lineage6.1.3 | None | ERR11050018 | Sensitive | lineage4.1.2.1 | None | ERR11050037 | Sensitive | lineage4.1.2.1 | None | ERR11050038 | Sensitive | lineage4.9 | None | ERR11050040 | MDR-TB | lineage2.2.1 | None | ERR11050049 | Sensitive | lineage3.1.1 | None | ERR11050077 | Sensitive | lineage4.8 | None | ERR11050056 | HR-TB | lineage4.8 | None | ERR11050062 | Sensitive | lineage6.2.3 | None | ERR11050069 | Sensitive | lineage4 | None | ERR11050073 | HR-TB | lineage3 | None | ERR11050057 | Sensitive | lineage4.1.2.1 | None | ERR11050068 | Sensitive | lineage3 | None | ERR11050070 | Sensitive | lineage4.8 | None | ERR11050081 | HR-TB | lineage4.1.2 | None | ERR11050080 | Sensitive | lineage4.8 | None | ERR11050086 | HR-TB | lineage4 | None | ERR11050083 | Sensitive | lineage4.8 | None | ERR11050094 | Sensitive | lineage4.7 | None | ERR11050085 | Sensitive | lineage4.8 | None | ERR11050087 | Sensitive | lineage4.8 | None | ERR11050088 | Sensitive | lineage4.4.1.2 | None | ERR11050090 | Other | La1.7.X-unk4 | None | ERR11050092 | Sensitive | lineage4.3.3 | None | ERR11050098 | Sensitive | lineage4 | None | ERR11050091 | Sensitive | lineage4.8 | None | ERR11050095 | Sensitive | lineage4.1.2 | None | ERR11050096 | Sensitive | lineage4.1.2.1 | None | ERR11050100 | Sensitive | lineage4.1.2.1 | None | ERR11050176 | Sensitive | lineage4.1.2 | None | ERR11050113 | Sensitive | lineage2.2.1 | None | ERR11050123 | RR-TB | lineage5.3 | None | ERR11050119 | Sensitive | lineage1.1.2 | None | ERR11050097 | Sensitive | lineage1.2.1.1 | None | ERR11050101 | Sensitive | lineage2.2.1 | None | ERR11050104 | Sensitive | lineage3 | None | ERR11050110 | Sensitive | lineage2.2.1 | None | ERR11050180 | Sensitive | lineage4.1.2.1 | None | ERR11050186 | Sensitive | lineage3 | None | ERR11050184 | HR-TB | lineage4.3.4.2 | None | ERR11050195 | Sensitive | lineage4.1.2.1 | None | ERR11050207 | MDR-TB | lineage4.3.4.2 | None | ERR11050208 | MDR-TB | lineage4.3.4.2 | None | ERR11050209 | MDR-TB | lineage4.3.4.2 | None | ERR11050214 | Sensitive | lineage4.8 | None | ERR11050210 | MDR-TB | lineage4.3.4.2 | None | ERR11050224 | MDR-TB | lineage2.2.1 | None | ERR11050230 | Sensitive | lineage4.1.1 | None | ERR11050234 | HR-TB | lineage4.1.2.1 | None | ERR11050239 | Sensitive | lineage1.1.3.2 | None | SRR10810929 | Sensitive | lineage3 | None | ERR11050360 | Sensitive | lineage4.1.2.1 | None | ERR11050274 | Other | lineage4.6.2.2 | None | ERR11050282 | MDR-TB | lineage4.5 | None | ERR11050356 | Sensitive | lineage4.3.2 | None | ERR11050401 | Other | lineage3 | None | ERR11050365 | Sensitive | lineage4.1.2.1 | None | ERR11050520 | HR-TB | lineage4.2.1.1 | None | ERR11050489 | Sensitive | lineage4.1.2.1 | None | ERR11050510 | Sensitive | lineage3 | None | ERR11050516 | Sensitive | lineage4.3.4.1 | None | SRR13232597 | MDR-TB | lineage2.2.1 | None | ERR11050459 | Sensitive | lineage4.4.1.1 | None | ERR11050463 | HR-TB | lineage2.2.1 | None | ERR11050483 | Sensitive | lineage4.1.2.1 | None | ERR11050495 | Sensitive | lineage3 | None | ERR11050504 | Sensitive | lineage4.1.2.1 | None | ERR11050532 | MDR-TB | lineage4.3.1 | None | SRR14781848 | Sensitive | lineage4.8 | None | ERR11050561 | Sensitive | lineage4.8 | None | SRR14781865 | Pre-XDR-TB | lineage4.2.1 | None | SRR14781856 | MDR-TB | lineage4.2.1 | None | SRR14781855 | MDR-TB | lineage4.2.1 | None | SRR14781860 | Sensitive | lineage4.8 | None | SRR14781873 | Other | lineage2.2.1 | None | SRR14781880 | Sensitive | lineage4.8 | None | SRR14781872 | Pre-XDR-TB | lineage4.3.3 | None | SRR14781900 | Sensitive | lineage4.8 | None | SRR14781945 | Sensitive | lineage4.1.2.1 | None | SRR14781914 | HR-TB | lineage2.2.1 | None | SRR14781933 | Sensitive | lineage2.2.1 | None | SRR14781940 | Other | La1.2.BCG | None | SRR14781946 | MDR-TB | lineage2.2.1 | None | SRR14781960 | Sensitive | lineage4.3.3 | None | SRR14781924 | Pre-XDR-TB | lineage2.2.1 | None | SRR14781958 | Sensitive | lineage4.2.1.1 | None | SRR14781959 | MDR-TB | lineage2.2.1 | None | SRR14781987 | Sensitive | lineage4.1.2.1 | None | SRR14781966 | Other | lineage2.2.1 | None | SRR14782006 | Sensitive | lineage4.8 | None | SRR14782315 | Sensitive | lineage4.1.2.1 | None | SRR14782136 | Pre-XDR-TB | lineage4.2.1 | None | SRR14782133 | Sensitive | lineage4.3.3 | None | SRR14782230 | MDR-TB | lineage2.2.1 | None | SRR14782270 | Sensitive | lineage4.3.3 | None | SRR14782286 | MDR-TB | lineage4.2.1 | None | SRR14782304 | Sensitive | lineage4.3.3 | None | SRR14782317 | Pre-XDR-TB | lineage4.2.1 | None | SRR14782024 | Sensitive | lineage4.3.3 | None | SRR14782176 | MDR-TB | lineage2.2.1 | None | SRR14782348 | Other | lineage4.2.1.1 | None | SRR14782325 | MDR-TB | lineage2.2.1 | None | SRR14782417 | MDR-TB | lineage4.2.1 | None | SRR14782413 | Other | lineage4.8 | None | SRR14782415 | Other | lineage4.2.1.1 | None | SRR14782423 | Sensitive | lineage4.8 | None | SRR14782437 | Sensitive | lineage2.2.1 | None | SRR14782428 | Sensitive | lineage4.3.3 | None | SRR14782427 | HR-TB | lineage4.2.1 | None | SRR14782468 | Sensitive | lineage4.1.2 | None | SRR14782438 | Sensitive | lineage4.8 | None | SRR14782481 | Sensitive | lineage4.3.4.1 | None | SRR14782474 | MDR-TB | lineage2.2.1 | None | SRR14782492 | Sensitive | lineage4.8 | None | SRR14782480 | MDR-TB | lineage2.2.1 | None | SRR14782489 | Sensitive | lineage2.2.1 | None | SRR14782484 | Other | lineage4.2.1.1 | None | SRR14782503 | Other | lineage4.2.1.1 | None | SRR14782498 | Sensitive | lineage2.2.1 | None | SRR14782546 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782519 | MDR-TB | lineage4;lineage2.2.1 | None | SRR14782506 | Sensitive | lineage4.8 | None | SRR14782567 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782547 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782566 | Sensitive | lineage4.8 | None | SRR14782568 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782573 | Sensitive | lineage4.2.1.1 | None | SRR14782579 | HR-TB | lineage4.2.1.1 | None | SRR14782576 | Sensitive | lineage4.3.3 | None | SRR14782572 | Sensitive | lineage4.3.3 | None | SRR14782588 | MDR-TB | lineage2.2.1 | None | SRR14782589 | Sensitive | lineage4.8 | None | SRR14782578 | Sensitive | lineage2.2.1 | None | SRR14782607 | Sensitive | lineage4.8 | None | SRR14782585 | Sensitive | lineage4.8 | None | SRR14782597 | Sensitive | lineage4.2.1 | None | SRR14782605 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782602 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782608 | Other | lineage2.2.1 | None | SRR14782610 | Sensitive | lineage4.8 | None | SRR14782640 | Sensitive | lineage2.2.1 | None | SRR14782615 | MDR-TB | lineage2.2.1 | None | SRR14782628 | HR-TB | lineage4.2.1.1 | None | SRR14782622 | MDR-TB | lineage2.2.1 | None | SRR14782630 | MDR-TB | lineage2.2.1 | None | SRR14782663 | Sensitive | lineage2.2.1 | None | SRR14782644 | Sensitive | lineage2.2.1 | None | SRR14782658 | MDR-TB | lineage4.2.1;lineage2.2.1 | None | SRR14782693 | Pre-XDR-TB | lineage4.2.1 | None | SRR14782674 | Sensitive | lineage2.2.1 | None | SRR14782668 | Sensitive | lineage2.2.1 | None | SRR14782689 | MDR-TB | lineage4.2.1 | None | SRR14782719 | Other | La1.2.BCG | None | SRR14782684 | Other | lineage2.2.1 | None | SRR14782695 | Sensitive | lineage4.8 | None | SRR14782711 | Sensitive | lineage4.3.4.1 | None | SRR14782687 | Sensitive | lineage4.3.3 | None | SRR14782699 | Sensitive | lineage4.2.1.1 | None | SRR14782765 | MDR-TB | lineage2.2.1 | None | SRR14801302 | MDR-TB | lineage2.2.1 | None | SRR14782756 | Sensitive | lineage2.2.1 | None | SRR14782797 | Sensitive | lineage4.8 | None | SRR14782773 | Sensitive | lineage4.3.4.1 | None | ERR11050579 | Sensitive | lineage2.2.1 | None | SRR14801551 | Pre-XDR-TB | lineage4.2.1 | None | SRR14801402 | RR-TB | lineage4.8 | None | SRR14801425 | Sensitive | lineage2.2.1 | None | SRR14801493 | Other | lineage2.2.1 | None | SRR14801590 | MDR-TB | lineage4.2.1 | None | SRR14801744 | Sensitive | lineage2.2.1 | None | SRR14801669 | Other | lineage4.1.2 | None | SRR14801846 | MDR-TB | lineage4.2.1 | None | SRR14801839 | Sensitive | lineage4.3.3 | None | SRR14801986 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801861 | Sensitive | lineage4.3.3 | None | SRR14801845 | HR-TB | lineage2.2.1 | None | ERR11050590 | Other | lineage1.2.1.1 | None | ERR11050598 | Sensitive | lineage4.8 | None | SRR14802223 | Sensitive | lineage4.2.1.1 | None | SRR14801983 | Sensitive | lineage4.3.3 | None | ERR11050593 | Sensitive | lineage4.8 | None | SRR14802245 | Sensitive | lineage4.8 | None | ERR11050595 | Sensitive | lineage3 | None | ERR11050666 | Sensitive | lineage4.1.2.1 | None | ERR11050624 | Other | lineage3 | None | ERR11050632 | Sensitive | lineage1.1.2 | None | ERR11050655 | Sensitive | lineage2.2.1 | None | SRR16088109 | MDR-TB | lineage2.2.1 | None | SRR16088101 | Sensitive | lineage4.1.2.1 | None | SRR16088129 | HR-TB | lineage4.3.3 | None | SRR16088138 | Sensitive | lineage4.8 | None | SRR16088141 | HR-TB | lineage4 | None | SRR16088140 | Sensitive | lineage2.2.1 | None | SRR16088151 | HR-TB | lineage2.2.1 | None | SRR16088142 | HR-TB | lineage4.2.1 | None | SRR16088247 | Sensitive | lineage4.2.1.1 | None | SRR16088236 | Sensitive | lineage4.8 | None | SRR16088238 | Sensitive | lineage4.2.1 | None | SRR16088248 | Sensitive | lineage4.2.1.1 | None | SRR16088255 | Sensitive | lineage4.8 | None | SRR16088258 | Sensitive | lineage4.8 | None | SRR16088259 | Sensitive | lineage4.8 | None | SRR16088433 | Other | lineage4.8 | None | SRR16088264 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088442 | Sensitive | lineage4.2.1 | None | SRR16088434 | Sensitive | lineage4.8 | None | SRR16088431 | Sensitive | lineage4.8 | None | SRR16088436 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088441 | Sensitive | lineage4.8 | None | SRR16088446 | HR-TB | lineage4.3.3 | None | SRR16088448 | MDR-TB | lineage2.2.1 | None | SRR16088445 | Other | lineage2.2.1 | None | SRR16088453 | Sensitive | lineage4.1.2.1 | None | SRR16088447 | Sensitive | lineage4.8 | None | SRR16088450 | Sensitive | lineage4.8 | None | SRR18714778 | Sensitive | lineage4.2.1.1 | None | SRR16157094 | Pre-XDR-TB | lineage4.4.1.1 | None | ERR11050702 | Sensitive | lineage3 | None | ERR11050748 | Sensitive | lineage4.5 | None | SRR16088452 | Other | lineage2.2.1 | None | SRR18714916 | MDR-TB | lineage2.2.1 | None | SRR18714805 | Other | lineage4.8 | None | SRR18714944 | Sensitive | lineage4.1.2.1 | None | SRR18714975 | Other | lineage4.8 | None | SRR18714983 | Sensitive | lineage4.1.2.1 | None | SRR18714994 | Sensitive | lineage4.8 | None | SRR18714977 | Sensitive | lineage4.8 | None | SRR18714995 | Sensitive | lineage4.3.3 | None | SRR18715189 | MDR-TB | lineage4.3.3 | None | SRR18715062 | MDR-TB | lineage2.2.1 | None | SRR18715048 | Sensitive | lineage4.8 | None | SRR18715302 | MDR-TB | lineage2.2.1 | None | SRR18715238 | Sensitive | lineage4.8 | None | SRR18715260 | HR-TB | lineage2.2.1 | None | SRR18715275 | MDR-TB | lineage2.2.1 | None | SRR18715367 | Sensitive | lineage4.3.3 | None | SRR18715307 | MDR-TB | lineage2.2.1 | None | SRR18715366 | Sensitive | lineage4.3.3 | None | ERR11050782 | Sensitive | lineage4.1.2.1 | None | SRR18715397 | Sensitive | lineage4.3.3 | None | SRR18715421 | HR-TB | lineage4.2.1 | None | ERR11081896 | Other | lineage4.1.2.1 | None | ERR11050795 | Sensitive | lineage4.8 | None | ERR11081543 | Other | lineage4.1.2.1 | None | ERR11050783 | HR-TB | lineage4.1.2.1 | None | ERR11050923 | Sensitive | lineage4.8 | None | ERR11081506 | HR-TB | lineage4.8 | None | ERR11082848 | Sensitive | lineage4.1.2.1 | None | ERR11082588 | Sensitive | lineage4.1.2.1 | None | ERR11082593 | Sensitive | lineage4.2.2.1 | None | SRR23311017 | Sensitive | lineage4.7 | None | ERR11082855 | Sensitive | lineage4.2.2.2 | None | ERR11083029 | Sensitive | lineage4.1.2.1 | None | ERR11083031 | Other | lineage4.2.2.2 | None | SRR23310867 | MDR-TB | lineage2.2 | None | SRR23311018 | Pre-XDR-TB | lineage2.2 | None | ERR11049712 | Sensitive | lineage4.6.2.2 | None | ERR11049763 | Sensitive | lineage4.1.2.1 | None | ERR11049780 | Sensitive | lineage3 | None |
---|