lineage | Count |
---|---|
lineage4.1.2.1 | 27 |
lineage2.2.1 | 48 |
lineage3.1.2 | 1 |
lineage4.4 | 1 |
lineage4.2.2.2;lineage2.2.1 | 1 |
lineage4.1.2 | 4 |
lineage3 | 36 |
lineage4.3.3 | 16 |
lineage4.1.1.3.1 | 2 |
lineage4.8 | 19 |
lineage1.2.1.2.1 | 4 |
lineage4.4.1.1 | 4 |
lineage4.3.4.2.1 | 6 |
lineage1.1.2 | 10 |
lineage4.2.1 | 2 |
La1.8.1 | 11 |
lineage4.1.1.2 | 1 |
lineage1.2.1.1 | 1 |
lineage3.1 | 3 |
lineage4 | 6 |
lineage4.3.1.1 | 1 |
lineage4.1.1.3 | 7 |
lineage2.2.1.1 | 5 |
lineage1.1.3.1 | 6 |
lineage4.3.2.1 | 9 |
lineage4.7 | 3 |
lineage4.1.1 | 3 |
lineage4.3.4.1 | 11 |
lineage4.3.4.2 | 6 |
lineage4.9 | 14 |
La1.7.1 | 6 |
lineage4.3 | 1 |
lineage6 | 2 |
lineage6.1.3 | 2 |
lineage4.1 | 1 |
lineage3.1.2.1 | 2 |
3 | |
La1.6 | 1 |
lineage2.2.2 | 1 |
lineage1.2.2.2 | 6 |
lineage1.1.1 | 2 |
La2 | 1 |
lineage5.1.1 | 1 |
La1.3 | 1 |
lineage4.3.2 | 1 |
lineage3;lineage2.2.1 | 1 |
lineage4.6 | 1 |
lineage2.2.1.2 | 1 |
lineage4.6.2.2 | 2 |
lineage4.5 | 3 |
lineage3.1.2.2 | 1 |
lineage4;lineage1.2.2.1 | 1 |
lineage4.4.1.2 | 1 |
lineage4.8.1 | 1 |
lineage3.1.1 | 2 |
lineage4.8.2 | 1 |
lineage4.2.2.2 | 1 |
lineage4.4.2 | 1 |
lineage4.2.1.1 | 1 |
lineage1.2.2.1 | 1 |
La1.8.2 | 1 |
spoligotype | Count |
---|---|
None | 319 |
ID | Drug resistance | Lineage | Country iso2 | ERR4819722 | Sensitive | lineage4.1.2.1 | None | SRR5341228 | Sensitive | lineage2.2.1 | in | SRR5341232 | HR-TB | lineage3.1.2 | in | SRR5341237 | Pre-XDR-TB | lineage2.2.1 | in | SRR5341246 | Other | lineage2.2.1 | None | SRR5341248 | Sensitive | lineage4.4 | None | SRR5341247 | MDR-TB | lineage2.2.1 | in | SRR5341255 | MDR-TB | lineage2.2.1 | None | SRR5341261 | MDR-TB | lineage4.2.2.2;lineage2.2.1 | in | ERR4819786 | Sensitive | lineage2.2.1 | None | ERR4819897 | Other | lineage4.1.2 | gb | ERR2514750 | Sensitive | lineage3 | gb | ERR2514968 | Other | lineage4.3.3 | None | ERR2514822 | Sensitive | lineage4.1.1.3.1 | None | ERR4820553 | Sensitive | lineage4.8 | gb | ERR4820026 | Other | lineage3 | None | SRR6046096 | Other | lineage4.1.2.1 | None | ERR4821823 | Sensitive | lineage1.2.1.2.1 | None | ERR4821150 | Sensitive | lineage2.2.1 | gb | SRR20139569 | RR-TB | lineage4.1.2.1 | None | ERR4821153 | Sensitive | lineage4.4.1.1 | None | ERR4822244 | Sensitive | lineage4.3.4.2.1 | None | ERR4821258 | Sensitive | lineage1.1.2 | None | ERR4822238 | Sensitive | lineage4.1.2.1 | None | ERR4821492 | HR-TB | lineage3 | None | SRR6045664 | Other | lineage4.2.1 | None | ERR4822279 | Sensitive | lineage3 | None | SRR5657515 | Other | La1.8.1 | None | SRR6045690 | Sensitive | lineage4.8 | None | SRR6045860 | Sensitive | lineage4.1.1.2 | None | SRR6044940 | Sensitive | lineage1.2.1.1 | None | SRR6044807 | Sensitive | lineage4.3.3 | gb | SRR6045910 | Other | lineage3.1 | None | SRR6044936 | Other | lineage4 | None | SRR6045146 | Sensitive | lineage3 | gb | SRR6045086 | Other | lineage3 | None | SRR6046260 | Sensitive | lineage4.3.1.1 | None | ERR551241 | MDR-TB | lineage4.1.1.3 | sz | SRR6046803 | Sensitive | lineage3 | gb | SRR6257083 | HR-TB | lineage4.3.3 | None | SRR6458423 | HR-TB | lineage2.2.1 | None | ERR4831957 | MDR-TB | lineage2.2.1 | vn | SRR6257081 | Sensitive | lineage4.1.2.1 | None | ERR4831725 | MDR-TB | lineage2.2.1.1 | None | ERR4831797 | MDR-TB | lineage2.2.1 | vn | ERR4831824 | MDR-TB | lineage2.2.1 | vn | ERR4831798 | HR-TB | lineage2.2.1 | vn | SRR6797296 | Sensitive | lineage1.1.3.1 | None | SRR6982084 | Sensitive | lineage4.4.1.1 | None | SRR6896282 | Sensitive | lineage4.3.2.1 | None | SRR6982168 | Sensitive | lineage4.4.1.1 | None | SRR6982182 | Other | lineage4.3.2.1 | None | SRR6982202 | Sensitive | lineage4.7 | None | SRR6982223 | Sensitive | lineage4.3.2.1 | None | SRR6982255 | Sensitive | lineage4.1.1 | None | SRR6982252 | Sensitive | lineage4.3.2.1 | None | SRR6964660 | Other | lineage3 | None | SRR6982331 | Other | lineage4.1.1.3 | None | SRR6982038 | HR-TB | lineage1.1.2 | None | SRR6982013 | Sensitive | lineage2.2.1 | None | SRR6982348 | Sensitive | lineage4.3.4.1 | None | SRR6982394 | Sensitive | lineage4.3.2.1 | None | SRR6982044 | Sensitive | lineage4.1.1.3 | None | ERR4831879 | HR-TB | lineage2.2.1 | vn | ERR3063112 | Sensitive | lineage4.4.1.1 | None | ERR4831894 | MDR-TB | lineage2.2.1.1 | None | SRR6982521 | Sensitive | lineage2.2.1 | None | ERR5165809 | Sensitive | lineage4.3.3 | None | ERR5165820 | HR-TB | lineage4.3.3 | None | ERR5165804 | Sensitive | lineage4.3.3 | None | SRR8600024 | Other | La1.8.1 | None | SRR6982558 | Other | lineage4.3.4.2 | None | SRR9940976 | Sensitive | lineage4.9 | None | SRR8600009 | Other | La1.8.1 | None | SRR9940962 | Sensitive | lineage4.9 | None | SRR8600069 | Other | La1.8.1 | None | ERR10748272 | Pre-XDR-TB | lineage4.3.3 | None | SRR8600109 | Other | La1.8.1 | None | SRR8600279 | Other | La1.8.1 | None | DRR034500 | Sensitive | lineage2.2.1 | None | DRR034528 | Sensitive | lineage4.9 | None | DRR185069 | HR-TB | lineage2.2.1 | vn | DRR185118 | Sensitive | lineage2.2.1 | vn | ERR1193665 | Sensitive | lineage4.3.3 | np | ERR1193700 | HR-TB | lineage4.3.4.2 | pt | ERR1193678 | HR-TB | lineage4.3.4.2 | ch | ERR1193680 | HR-TB | lineage4.3.4.1 | ch | ERR1193687 | Sensitive | lineage4.3.4.1 | sv | ERR1193723 | HR-TB | lineage4.3.3 | mx | ERR1193716 | Sensitive | lineage4.3.3 | None | ERR1193711 | Sensitive | lineage4.3.4.1 | pg | ERR1193704 | HR-TB | lineage4.3.3 | us | ERR1193740 | Sensitive | lineage4.3.4.1 | pt | ERR1193731 | Sensitive | lineage4.3.4.1 | cz | ERR1193729 | Sensitive | lineage4.3.4.1 | us | ERR1367690 | Other | lineage4.3.4.2 | None | ERR1367679 | Sensitive | lineage4.3.4.1 | None | ERR1367664 | HR-TB | lineage4.3.4.1 | None | ERR3799577 | Sensitive | lineage4.1.2.1 | None | ERR1367692 | Sensitive | lineage4.3.4.2 | None | ERR3587591 | Other | La1.7.1 | None | ERR3588243 | Sensitive | lineage4.3 | None | ERR3804023 | Sensitive | lineage6 | None | ERR7421585 | HR-TB | lineage4.3.3 | None | ERR4192351 | Other | lineage6.1.3 | None | ERR4192349 | Other | lineage6.1.3 | None | ERR4407493 | Sensitive | lineage4.1.2.1 | None | ERR4407509 | Other | lineage3 | None | ERR7162977 | Pre-XDR-TB | lineage2.2.1 | None | ERR7975687 | MDR-TB | lineage2.2.1 | None | ERR9117737 | Sensitive | lineage4.1 | None | ERR9117727 | Sensitive | lineage4.3.3 | None | ERR8773490 | Sensitive | lineage4.3.3 | None | ERR9125886 | Other | lineage2.2.1 | None | ERR9117795 | Sensitive | lineage4.7 | None | ERR9117797 | Sensitive | lineage3 | None | ERR9125834 | Sensitive | lineage3.1.2.1 | None | SRR11462932 | Other | La1.8.1 | None | ERR9786377 | Sensitive | lineage4.1.2.1 | None | ERR9787181 | Sensitive | lineage6 | None | ERR983230 | Pre-XDR-TB | lineage2.2.1.1 | None | ERR9657204 | Sensitive | None | SRR10993954 | Other | La1.6 | None | SRR11871426 | MDR-TB | lineage2.2.1 | None | SRR11823427 | Sensitive | lineage4.9 | None | SRR11972171 | RR-TB | lineage2.2.2 | None | SRR11972157 | MDR-TB | lineage2.2.1 | None | SRR11972166 | Sensitive | lineage1.1.3.1 | None | SRR11972405 | MDR-TB | lineage2.2.1.1 | None | SRR11972281 | MDR-TB | lineage2.2.1 | None | SRR11972366 | Sensitive | lineage2.2.1 | None | SRR12199461 | Sensitive | lineage1.1.3.1 | None | SRR11972425 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972458 | Sensitive | lineage1.1.2 | None | SRR11972453 | Sensitive | lineage1.1.2 | None | SRR12199395 | Sensitive | lineage1.2.2.2 | None | SRR11972411 | MDR-TB | lineage2.2.1 | None | SRR13199745 | Other | La1.7.1 | None | SRR12199469 | Sensitive | lineage1.1.1 | None | SRR13199729 | Other | La1.7.1 | None | SRR12199470 | Sensitive | lineage3 | None | SRR13888799 | Sensitive | La2 | None | SRR14001978 | Other | La1.7.1 | None | SRR14088361 | MDR-TB | lineage3.1 | None | SRR14049342 | Other | La1.8.1 | None | SRR14088362 | Sensitive | lineage3 | None | SRR14088386 | Pre-XDR-TB | lineage3 | None | SRR16096998 | Sensitive | lineage4.1.2.1 | None | SRR16057934 | Sensitive | lineage3.1.2.1 | None | SRR16058267 | Other | lineage2.2.1 | None | SRR16115019 | Sensitive | lineage4 | None | SRR1640711 | Sensitive | lineage4.1.2 | None | SRR16370251 | Sensitive | None | SRR16370372 | Other | lineage2.2.1 | None | SRR16370444 | Other | lineage2.2.1.1 | None | SRR16370598 | Sensitive | lineage3 | None | SRR1640710 | Sensitive | lineage4.1.2 | ca | SRR1735573 | Sensitive | lineage3 | None | SRR1735574 | Other | lineage5.1.1 | None | SRR1735588 | Sensitive | lineage2.2.1 | None | SRR1792052 | Other | La1.8.1 | None | SRR1791711 | Other | La1.3 | None | SRR1791974 | Other | La1.8.1 | None | SRR18391648 | Other | La1.7.1 | None | SRR18911583 | Sensitive | lineage1.1.3.1 | None | SRR18897168 | Sensitive | lineage2.2.1 | None | SRR18910164 | Sensitive | lineage2.2.1 | None | SRR18910196 | Sensitive | lineage4 | None | SRR18910212 | Sensitive | lineage1.2.2.2 | None | SRR18911462 | Sensitive | lineage1.2.1.2.1 | None | SRR19315446 | Sensitive | lineage3 | None | SRR19314670 | Sensitive | lineage4.3.2 | None | SRR20139551 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR19451491 | Sensitive | None | SRR20139552 | MDR-TB | lineage4.1.2.1 | None | SRR20139561 | RR-TB | lineage4.1.2.1 | None | SRR20139553 | MDR-TB | lineage4.8 | None | SRR20551052 | HR-TB | La1.7.1 | None | SRR20139570 | HR-TB | lineage4.1.2.1 | None | SRR20139562 | RR-TB | lineage4.8 | None | SRR2101651 | Sensitive | lineage4.3.2.1 | None | SRR2101487 | Sensitive | lineage3;lineage2.2.1 | None | SRR2101497 | Sensitive | lineage4.3.2.1 | None | SRR2101581 | Sensitive | lineage4.1.1.3 | None | SRR2101784 | Sensitive | lineage4.1.1.3 | None | SRR2101712 | Sensitive | lineage4.3.4.2.1 | None | SRR21657441 | Sensitive | lineage4.1.2.1 | None | SRR21659030 | Other | lineage4.6 | None | SRR21657657 | Sensitive | lineage2.2.1 | None | SRR21658550 | Other | lineage1.1.1 | None | SRR21675847 | Sensitive | lineage4.3.4.2.1 | None | SRR21661634 | Sensitive | lineage1.2.1.2.1 | None | SRR21675840 | Sensitive | lineage2.2.1 | None | SRR21676526 | Other | lineage4.1.1.3 | None | SRR21713569 | Sensitive | lineage2.2.1.2 | None | SRR21676933 | Sensitive | lineage4.3.4.1 | None | SRR21713562 | Sensitive | lineage3 | None | SRR21677069 | Sensitive | lineage1.2.1.2.1 | None | SRR21678378 | Sensitive | lineage4.6.2.2 | None | SRR21685114 | Sensitive | lineage2.2.1 | None | SRR21685256 | Other | lineage4.8 | None | SRR21685363 | Sensitive | lineage3 | None | SRR21726723 | Sensitive | lineage4.1.2.1 | None | SRR21728182 | Sensitive | lineage2.2.1 | None | SRR21727747 | Sensitive | lineage4.1.2.1 | None | SRR23174151 | Other | La1.8.1 | None | SRR22048490 | Sensitive | lineage4.9 | None | SRR6650346 | Sensitive | lineage4.9 | None | ERR552454 | Sensitive | lineage4.3.3 | None | SRR8662667 | Pre-XDR-TB | lineage2.2.1 | None | SRR6650303 | Other | lineage2.2.1 | None | SRR6650379 | Sensitive | lineage4.5 | None | SRR6650428 | Sensitive | lineage1.2.2.2 | None | SRR6650175 | Sensitive | lineage1.2.2.2 | None | SRR6650285 | Sensitive | lineage4.8 | None | SRR6650368 | Sensitive | lineage1.2.2.2 | None | SRR6650391 | Sensitive | lineage1.1.3.1 | None | SRR6650210 | Sensitive | lineage1.1.3.1 | None | ERR4815150 | Sensitive | lineage3.1.2.2 | gb | ERR551255 | Sensitive | lineage4.1.2.1 | None | SRR6650390 | Sensitive | lineage4;lineage1.2.2.1 | None | SRR6797635 | Other | lineage2.2.1 | None | SRR6650117 | Sensitive | lineage4.4.1.2 | None | SRR6650283 | Sensitive | lineage3 | None | SRR6650149 | HR-TB | lineage4.8 | None | SRR6650392 | Sensitive | lineage2.2.1 | None | SRR6650302 | Sensitive | lineage3 | None | SRR6650399 | Sensitive | lineage4.1.2.1 | None | ERR4814398 | Sensitive | lineage2.2.1 | None | ERR4815246 | HR-TB | lineage4.9 | None | ERR4815230 | Other | lineage1.1.2 | gb | ERR4815293 | Sensitive | lineage4.9 | None | ERR4815399 | Sensitive | lineage4.2.1 | gb | ERR4814447 | Sensitive | lineage4.8.1 | None | ERR4815703 | Sensitive | lineage4.9 | None | ERR4815711 | Sensitive | lineage3 | None | ERR4815791 | Sensitive | lineage4.8 | None | ERR1750908 | Sensitive | lineage4 | None | ERR1750927 | Other | lineage4.3.2.1 | za | ERR1750928 | Sensitive | lineage4.3.2.1 | za | ERR4815723 | Sensitive | lineage3 | gb | SRR3675250 | HR-TB | lineage3 | None | SRR3675458 | HR-TB | lineage4.5 | None | SRR3675244 | Sensitive | lineage4.8 | gb | ERR4815079 | RR-TB | lineage3 | None | ERR4815098 | Sensitive | lineage1.1.2 | gb | ERR4815852 | Sensitive | lineage4.3.4.2.1 | None | ERR2229762 | HR-TB | lineage4.8 | None | ERR2229033 | Other | lineage4.8 | None | ERR4816151 | Other | lineage4.8 | None | ERR4816184 | Other | lineage4.1.2.1 | None | ERR4816407 | Sensitive | lineage2.2.1 | gb | ERR4815890 | HR-TB | lineage3 | gb | ERR4816009 | Other | lineage1.1.2 | None | SRR3675534 | Other | lineage4.3.4.2.1 | None | ERR4816056 | MDR-TB | lineage2.2.1 | None | ERR2027290 | RR-TB | lineage3.1 | None | ERR2229211 | Sensitive | lineage4.8 | None | ERR4817124 | HR-TB | lineage2.2.1 | None | ERR2229215 | Sensitive | lineage4 | None | ERR2229236 | Other | lineage4.8 | None | ERR2245427 | Other | lineage3.1.1 | no | ERR4817220 | Sensitive | lineage4.8.2 | gb | ERR4817441 | Sensitive | lineage4.2.2.2 | None | ERR2229486 | Other | lineage4.8 | None | ERR4817279 | Sensitive | lineage4.3.4.2 | None | ERR2512961 | Sensitive | lineage4.1.1 | gb | ERR4817399 | Sensitive | lineage3 | gb | ERR4817189 | Other | lineage4.7 | None | ERR4816680 | Sensitive | lineage4.1.2.1 | gb | ERR4817206 | Pre-XDR-TB | lineage4.1.1.3.1 | gb | ERR4817239 | Sensitive | lineage4.1.1 | None | ERR2229799 | Sensitive | lineage4.8 | None | ERR2512987 | Sensitive | lineage4.5 | gb | ERR4817821 | Sensitive | lineage4.8 | None | ERR4817827 | Sensitive | lineage1.1.2 | None | ERR4818363 | Sensitive | lineage4.9 | None | ERR4818170 | Other | lineage4.1.2.1 | None | ERR4819037 | Sensitive | lineage4.4.2 | None | ERR4818185 | Sensitive | lineage3 | gb | ERR4818858 | Sensitive | lineage4.3.4.1 | None | ERR4818266 | Other | lineage3 | None | ERR4817884 | Sensitive | lineage3 | gb | ERR4819010 | Sensitive | lineage4.9 | None | ERR2513431 | Sensitive | lineage4.8 | gb | ERR4818129 | HR-TB | lineage4.1.2.1 | gb | ERR2503373 | Sensitive | lineage4.1.2.1 | None | ERR2503449 | Sensitive | lineage3.1.1 | None | ERR2503399 | HR-TB | lineage2.2.1 | None | ERR2503447 | Sensitive | lineage4.1.2.1 | fi | ERR2512693 | Other | lineage1.1.2 | gb | ERR2503473 | Sensitive | lineage4.1.2.1 | fi | ERR2503474 | Sensitive | lineage4.2.1.1 | None | ERR2503534 | Sensitive | lineage4.1.2 | fi | ERR2503504 | MDR-TB | lineage4.3.3 | fi | ERR4820351 | Sensitive | lineage4.9 | None | ERR2512750 | Sensitive | lineage1.2.2.2 | gb | ERR4818578 | Other | lineage4.6.2.2 | None | SRR5007165 | MDR-TB | lineage3 | None | ERR4818960 | Sensitive | lineage4.1.2.1 | gb | SRR5007173 | Sensitive | lineage2.2.1 | gb | SRR5007204 | Other | lineage4.1.2.1 | None | ERR4820242 | Other | lineage1.2.2.1 | None | ERR4819303 | Sensitive | lineage4.9 | None | ERR2514125 | Other | lineage3 | None | SRR1735646 | Sensitive | lineage2.2.1 | gb | ERR4819154 | Sensitive | lineage4.1.1.3 | None | ERR4819240 | Other | La1.8.2 | None | ERR2513862 | HR-TB | lineage4.9 | None | ERR4820296 | Sensitive | lineage1.1.2 | gb | ERR4820746 | RR-TB | lineage3 | None | ERR4819496 | Sensitive | lineage3 | None | ERR4820394 | Other | lineage4.3.4.2.1 | None | ERR2514389 | Other | lineage3 | None | ERR4819572 | HR-TB | lineage3 | gb | ERR2514357 | Sensitive | lineage2.2.1 | gb | ERR2514395 | MDR-TB | lineage4 | gb | ERR2514417 | Sensitive | lineage3 | gb | ERR2514488 | Sensitive | lineage4.8 | gb |
---|