Rv2780 - c.-125C>T
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
1 Sensitive
0 RR-TB
0 HR-TB
73 MDR-TB
68 Pre-XDR-TB
0 XDR-TB
0 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 140 |
| lineage2.2.1;lineage4.2.1 | 1 |
| lineage2.2.1;lineage4.3.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 142 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR29539284 | MDR-TB | lineage2.2.1 | None | SRR29539484 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284599 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865273 | Pre-XDR-TB | lineage2.2.1 | None | SRR14807461 | MDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR29539853 | MDR-TB | lineage2.2.1 | None | ERR5865993 | MDR-TB | lineage2.2.1 | None | SRR29539633 | MDR-TB | lineage2.2.1 | None | SRR18714962 | MDR-TB | lineage2.2.1 | None | ERR5865772 | MDR-TB | lineage2.2.1 | None | SRR18714965 | MDR-TB | lineage2.2.1 | None | SRR3743473 | Pre-XDR-TB | lineage2.2.1 | None | ERR13284627 | MDR-TB | lineage2.2.1 | None | SRR18714887 | MDR-TB | lineage2.2.1 | None | SRR16088339 | MDR-TB | lineage2.2.1 | None | SRR29538928 | MDR-TB | lineage2.2.1 | None | SRR29538887 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539200 | MDR-TB | lineage2.2.1 | None | SRR24255947 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865248 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865458 | MDR-TB | lineage2.2.1 | None | SRR5153311 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256101 | MDR-TB | lineage2.2.1 | None | SRR29539771 | MDR-TB | lineage2.2.1 | None | SRR29539110 | MDR-TB | lineage2.2.1 | None | SRR16088407 | Pre-XDR-TB | lineage2.2.1 | None | SRR14802270 | MDR-TB | lineage2.2.1 | None | SRR16087912 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865456 | MDR-TB | lineage2.2.1 | None | ERR11082726 | MDR-TB | lineage2.2.1 | None | ERR5865881 | MDR-TB | lineage2.2.1 | None | SRR7755757 | Pre-XDR-TB | lineage2.2.1;lineage4.3.3 | None | SRR16088456 | Pre-XDR-TB | lineage2.2.1 | None | SRR24256156 | Pre-XDR-TB | lineage2.2.1 | None | SRR15901691 | MDR-TB | lineage2.2.1 | None | SRR14802272 | MDR-TB | lineage2.2.1 | None | SRR29538879 | MDR-TB | lineage2.2.1 | None | ERR5864562 | MDR-TB | lineage2.2.1 | None | SRR16088545 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864834 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088428 | Pre-XDR-TB | lineage2.2.1 | None | ERR11049782 | MDR-TB | lineage2.2.1 | None | ERR13284073 | MDR-TB | lineage2.2.1 | None | ERR5864560 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539669 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539191 | MDR-TB | lineage2.2.1 | None | ERR13284371 | MDR-TB | lineage2.2.1 | None | ERR11243529 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865857 | Pre-XDR-TB | lineage2.2.1 | None | SRR7646059 | MDR-TB | lineage2.2.1 | None | SRR24255876 | Pre-XDR-TB | lineage2.2.1 | None | SRR29681333 | MDR-TB | lineage2.2.1 | None | ERR13284664 | MDR-TB | lineage2.2.1 | None | ERR5864833 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866564 | MDR-TB | lineage2.2.1 | None | SRR29539120 | MDR-TB | lineage2.2.1 | None | SRR16088420 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865771 | MDR-TB | lineage2.2.1 | None | SRR29539416 | MDR-TB | lineage2.2.1 | None | SRR29539809 | Pre-XDR-TB | lineage2.2.1 | None | ERR5864831 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539372 | Pre-XDR-TB | lineage2.2.1 | None | SRR24222950 | MDR-TB | lineage2.2.1 | None | ERR4822403 | Pre-XDR-TB | lineage2.2.1 | ua | SRR16088580 | MDR-TB | lineage2.2.1 | None | ERR11043590 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082813 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539427 | MDR-TB | lineage2.2.1 | None | ERR5865271 | Pre-XDR-TB | lineage2.2.1 | None | ERR4810784 | Sensitive | lineage2.2.1 | cn | ERR7911408 | Pre-XDR-TB | lineage2.2.1 | us | ERR7911748 | MDR-TB | lineage2.2.1 | us | ERR1034893 | MDR-TB | lineage2.2.1 | pt | ERR11043589 | MDR-TB | lineage2.2.1 | None | SRR18715326 | MDR-TB | lineage2.2.1 | None | ERR3639762 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539262 | MDR-TB | lineage2.2.1 | None | SRR18715039 | MDR-TB | lineage2.2.1 | None | SRR6831961 | Pre-XDR-TB | lineage2.2.1 | None | ERR11068632 | Pre-XDR-TB | lineage2.2.1 | None | SRR6831761 | MDR-TB | lineage2.2.1 | None | ERR2516138 | MDR-TB | lineage2.2.1 | None | ERR4829406 | MDR-TB | lineage2.2.1 | it | SRR24222955 | MDR-TB | lineage2.2.1 | None | ERR11043523 | Pre-XDR-TB | lineage2.2.1 | None | ERR11082136 | MDR-TB | lineage2.2.1 | None | ERR13284628 | Pre-XDR-TB | lineage2.2.1 | None | SRR10397162 | Pre-XDR-TB | lineage2.2.1 | None | SRR6832110 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865882 | MDR-TB | lineage2.2.1 | None | SRR16088048 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865250 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865455 | MDR-TB | lineage2.2.1 | None | ERR5864835 | Pre-XDR-TB | lineage2.2.1 | None | ERR13259979 | MDR-TB | lineage2.2.1 | None | ERR5865247 | Pre-XDR-TB | lineage2.2.1 | None | ERR11798560 | MDR-TB | lineage2.2.1 | None | SRR23310888 | MDR-TB | lineage2.2.1 | None | SRR16088427 | Pre-XDR-TB | lineage2.2.1 | None | ERR5866565 | MDR-TB | lineage2.2.1 | None | SRR10397140 | MDR-TB | lineage2.2.1 | None | SRR29539620 | Pre-XDR-TB | lineage2.2.1 | None | SRR29681272 | MDR-TB | lineage2.2.1 | None | SRR24256145 | Pre-XDR-TB | lineage2.2.1 | None | SRR28239991 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539498 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539848 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865274 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865700 | MDR-TB | lineage2.2.1 | None | ERR5865858 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865249 | Pre-XDR-TB | lineage2.2.1 | None | ERR4822402 | Pre-XDR-TB | lineage2.2.1 | ua | SRR24256152 | Pre-XDR-TB | lineage2.2.1 | None | ERR2510869 | MDR-TB | lineage2.2.1 | it | ERR5864559 | MDR-TB | lineage2.2.1 | None | ERR2510684 | Pre-XDR-TB | lineage2.2.1 | it | ERR5864561 | Pre-XDR-TB | lineage2.2.1 | None | SRR29356687 | MDR-TB | lineage2.2.1 | None | ERR11798561 | Pre-XDR-TB | lineage2.2.1 | None | SRR11033644 | Pre-XDR-TB | lineage2.2.1 | None | SRR18715406 | Pre-XDR-TB | lineage2.2.1 | None | SRR14807671 | MDR-TB | lineage2.2.1 | None | ERR5865251 | Pre-XDR-TB | lineage2.2.1 | None | ERR2600605 | MDR-TB | lineage2.2.1 | None | ERR11067641 | MDR-TB | lineage2.2.1 | None | SRR18715274 | Pre-XDR-TB | lineage2.2.1 | None | ERR4407558 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865457 | MDR-TB | lineage2.2.1 | None | ERR5865272 | Pre-XDR-TB | lineage2.2.1 | None | SRR16088581 | MDR-TB | lineage2.2.1 | None | ERR5864832 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865699 | MDR-TB | lineage2.2.1 | None | SRR18714959 | MDR-TB | lineage2.2.1 | None | ERR5864558 | MDR-TB | lineage2.2.1 | None | ERR5866584 | Pre-XDR-TB | lineage2.2.1 | None | ERR11243528 | Pre-XDR-TB | lineage2.2.1 | None | ERR11043834 | MDR-TB | lineage2.2.1 | None | ERR11044940 | MDR-TB | lineage2.2.1 | None | ERR5865974 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865884 | Pre-XDR-TB | lineage2.2.1 | None | SRR5153270 | Pre-XDR-TB | lineage2.2.1 | None | SRR29681469 | MDR-TB | lineage2.2.1 | None |
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