lineage | Count |
---|---|
lineage2.2.1 | 19 |
lineage4.4.1.1 | 2 |
lineage4.3.3 | 8 |
lineage4.1 | 1 |
lineage4.1.2.1 | 10 |
lineage4.1.1 | 1 |
lineage1.1.2 | 1 |
lineage4.3.2 | 1 |
lineage4.2.1.1 | 2 |
lineage4.2;lineage3 | 1 |
lineage4.2.1 | 3 |
lineage4.8 | 11 |
lineage4.3.4.1 | 2 |
lineage4.3.2.1 | 2 |
lineage4.3.4.2 | 1 |
lineage4.1.2 | 4 |
lineage4.3.3;lineage2.2.1 | 1 |
lineage3 | 5 |
lineage1.1.3.2 | 1 |
La3 | 1 |
lineage2.2.1.1 | 3 |
lineage4.7 | 4 |
lineage1.1.3 | 1 |
5 | |
lineage2.2 | 2 |
lineage4.1.3 | 1 |
lineage4 | 1 |
lineage4.6.2.2 | 1 |
La1.8.2 | 3 |
lineage4.9 | 1 |
La1.2 | 4 |
lineage4.9.1 | 1 |
lineage3.1.2 | 1 |
lineage1.2.2.2 | 1 |
lineage1.2.1.2.1 | 1 |
La1.2.BCG | 2 |
La1.8.1 | 1 |
lineage4.4.2 | 2 |
lineage4.4.1.2 | 1 |
spoligotype | Count |
---|---|
None | 113 |
ID | Drug resistance | Lineage | Country iso2 | SRR16088297 | MDR-TB | lineage2.2.1 | None | SRR18337397 | Sensitive | lineage4.4.1.1 | None | SRR18714875 | Pre-XDR-TB | lineage2.2.1 | None | SRR22536487 | Pre-XDR-TB | lineage4.3.3 | None | SRR18715219 | Sensitive | lineage4.1 | None | SRR24673513 | Sensitive | lineage4.3.3 | None | SRR19304055 | Sensitive | lineage4.1.2.1 | None | SRR21240191 | Sensitive | lineage4.1.2.1 | None | ERR11081805 | Sensitive | lineage4.1.1 | None | ERR11068731 | Sensitive | lineage1.1.2 | None | ERR11067813 | Sensitive | lineage4.3.2 | None | ERR11067935 | Sensitive | lineage4.1.2.1 | None | SRR22251936 | Sensitive | lineage4.2.1.1 | None | ERR11081939 | MDR-TB | lineage4.2;lineage3 | None | SRR23861714 | MDR-TB | lineage2.2.1 | None | ERR11082550 | Pre-XDR-TB | lineage2.2.1 | None | SRR23861715 | HR-TB | lineage4.2.1 | None | SRR23861781 | Sensitive | lineage4.1.2.1 | None | SRR23861888 | Sensitive | lineage4.8 | None | SRR23861990 | Sensitive | lineage4.8 | None | SRR23861994 | HR-TB | lineage4.8 | None | ERR7363053 | Pre-XDR-TB | lineage4.3.4.1 | None | ERR9806863 | MDR-TB | lineage4.3.2.1 | None | ERR7363013 | Sensitive | lineage4.3.4.2 | None | ERR7363059 | Sensitive | lineage4.1.2 | None | ERR7363091 | Sensitive | lineage4.3.3 | None | ERR7363047 | HR-TB | lineage4.3.3;lineage2.2.1 | None | SRR6650423 | HR-TB | lineage3 | None | ERR176781 | Sensitive | lineage1.1.3.2 | None | SRR27450596 | Sensitive | La3 | None | SRR22251217 | Sensitive | lineage4.1.2.1 | None | SRR27450306 | Sensitive | lineage2.2.1.1 | None | SRR28239897 | Other | lineage4.8 | None | ERR11050978 | Sensitive | lineage4.7 | None | ERR2229549 | Sensitive | lineage4.8 | None | ERR2027288 | Sensitive | lineage3 | None | ERR2027219 | Sensitive | lineage1.1.3 | None | ERR2229232 | HR-TB | lineage4.8 | None | ERR4816308 | Sensitive | None | ERR2229423 | Sensitive | lineage4.8 | None | ERR11049691 | Sensitive | lineage4.1.2 | None | SRR23310959 | MDR-TB | lineage2.2 | None | SRR23310850 | MDR-TB | lineage4.2.1 | None | ERR4822298 | MDR-TB | lineage3 | None | ERR4831537 | MDR-TB | lineage4.3.2.1 | None | ERR4828127 | MDR-TB | lineage2.2.1 | None | SRR6356966 | Pre-XDR-TB | lineage2.2.1 | None | ERR4872281 | Pre-XDR-TB | lineage2.2.1 | None | SRR8923705 | MDR-TB | lineage4.1.2 | None | ERR10465871 | Sensitive | lineage4.7 | None | ERR10680095 | MDR-TB | lineage4.1.2.1 | None | ERR10680118 | MDR-TB | lineage4.1.3 | None | ERR11043613 | RR-TB | lineage4.3.3 | None | ERR10748331 | MDR-TB | lineage2.2.1.1 | None | ERR11043132 | MDR-TB | lineage4.1.2.1 | None | ERR11043691 | Sensitive | lineage4.1.2.1 | None | ERR4143897 | Sensitive | None | ERR11043862 | Sensitive | lineage4.7 | None | ERR1194817 | HR-TB | lineage2.2 | None | ERR4276901 | MDR-TB | lineage3 | None | ERR4553586 | Pre-XDR-TB | None | ERR11049573 | Sensitive | lineage4.1.2 | None | ERR4553594 | MDR-TB | None | ERR4553719 | MDR-TB | None | ERR4553729 | Pre-XDR-TB | lineage2.2.1 | None | ERR11049552 | Sensitive | lineage4 | None | ERR11049574 | Sensitive | lineage4.6.2.2 | None | ERR6146482 | Other | La1.8.2 | None | ERR5979722 | Other | lineage4.9 | None | ERR6143841 | Other | La1.8.2 | None | ERR6149868 | Other | La1.8.2 | None | SRR21732337 | Sensitive | lineage4.8 | None | ERR6209444 | Other | La1.2 | None | ERR6210129 | Other | La1.2 | None | ERR6209445 | Other | La1.2 | None | ERR6209573 | Other | La1.2 | None | SRR22251146 | Sensitive | lineage4.1.2.1 | None | ERR7737766 | RR-TB | lineage4.9.1 | None | SRR22251148 | Other | lineage3.1.2 | None | SRR22251961 | HR-TB | lineage2.2.1 | None | ERR7911016 | MDR-TB | lineage4.2.1 | None | SRR22251627 | HR-TB | lineage1.2.2.2 | None | SRR21732515 | Sensitive | lineage2.2.1 | None | SRR22251599 | Sensitive | lineage1.2.1.2.1 | None | SRR10303300 | Other | La1.2.BCG | None | ERR11050136 | Sensitive | lineage4.8 | None | SRR10430376 | HR-TB | lineage2.2.1 | None | SRR10303326 | HR-TB | lineage2.2.1 | None | SRR10315558 | Sensitive | lineage2.2.1 | None | SRR10397201 | MDR-TB | lineage2.2.1 | None | SRR10430327 | Other | La1.2.BCG | None | SRR13232675 | Pre-XDR-TB | lineage4.3.3 | None | ERR11050249 | Sensitive | lineage4.8 | None | SRR13232444 | Sensitive | lineage2.2.1 | None | SRR13232533 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232622 | Sensitive | lineage4.3.3 | None | SRR10482941 | Other | La1.8.1 | None | ERR11050470 | Sensitive | lineage4.3.3 | None | SRR13232787 | Pre-XDR-TB | lineage2.2.1 | None | SRR14164996 | HR-TB | lineage4.4.1.1 | None | SRR14519671 | Sensitive | lineage4.4.2 | None | SRR14164998 | Sensitive | lineage4.4.1.2 | None | SRR14520072 | Sensitive | lineage3 | None | SRR14519883 | Sensitive | lineage4.4.2 | None | SRR14782149 | Sensitive | lineage4.3.3 | None | SRR14782194 | Sensitive | lineage4.7 | None | SRR14782797 | Sensitive | lineage4.8 | None | SRR14782350 | Sensitive | lineage4.3.4.1 | None | SRR14801858 | Sensitive | lineage4.1.2.1 | None | SRR14801646 | Sensitive | lineage2.2.1 | None | SRR14802247 | Sensitive | lineage2.2.1 | None | SRR15661600 | MDR-TB | lineage2.2.1.1 | None | SRR14807531 | Other | lineage4.2.1.1 | None |
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