Rv3197A - c.-80A>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
4 Sensitive
1 RR-TB
4 HR-TB
238 MDR-TB
57 Pre-XDR-TB
3 XDR-TB
1 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 233 |
| lineage4.3.3 | 33 |
| lineage4.3.4.2 | 5 |
| lineage2.2.1;lineage4.3.3 | 1 |
| lineage2.1 | 7 |
| lineage3 | 2 |
| lineage4.2.1.1 | 1 |
| lineage4.1.2.1 | 6 |
| lineage4 | 3 |
| lineage4.1.1.3 | 1 |
| lineage4.3.2 | 3 |
| lineage1.1.3.1 | 2 |
| lineage2.2.1;lineage4.8 | 2 |
| lineage6.2.2 | 1 |
| lineage1.1.2;lineage4.1.2.1 | 2 |
| lineage4.2.1 | 1 |
| lineage2.2.2 | 4 |
| lineage4.3.4.1 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 308 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR24709957 | Pre-XDR-TB | lineage2.2.1 | None | SRR13232543 | Pre-XDR-TB | lineage4.3.3 | None | ERR551495 | MDR-TB | lineage2.2.1 | None | ERR552389 | MDR-TB | lineage2.2.1 | None | SRR671722 | MDR-TB | lineage2.2.1 | cn | ERR551611 | MDR-TB | lineage2.2.1 | None | ERR3794518 | Pre-XDR-TB | lineage2.2.1 | None | ERR552748 | MDR-TB | lineage2.2.1 | None | ERR553184_ERR553183 | MDR-TB | lineage2.2.1 | None | SRR14807477 | Pre-XDR-TB | lineage2.2.1 | None | ERR552226_ERR552225 | MDR-TB | lineage2.2.1 | None | ERR553194_ERR553195 | MDR-TB | lineage2.2.1 | None | ERR550736 | MDR-TB | lineage2.2.1 | None | ERR552747 | MDR-TB | lineage2.2.1 | None | ERR551775 | MDR-TB | lineage2.2.1 | None | SRR10828207 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR551296 | MDR-TB | lineage2.2.1 | None | ERR550989 | RR-TB | lineage2.2.1 | None | ERR552586 | MDR-TB | lineage2.2.1 | None | SRR6832345 | MDR-TB | lineage4.3.3 | None | ERR552216_ERR552215_ERR552217 | MDR-TB | lineage2.2.1 | None | ERR552545_ERR552546 | MDR-TB | lineage2.2.1 | None | ERR552896 | MDR-TB | lineage2.2.1 | None | ERR552585 | MDR-TB | lineage2.2.1 | None | ERR3794445 | MDR-TB | lineage2.2.1 | None | ERR551133_ERR551132 | MDR-TB | lineage2.2.1 | None | ERR551000 | MDR-TB | lineage2.2.1 | None | SRR29539780 | MDR-TB | lineage2.2.1;lineage4.3.3 | None | ERR552446_ERR552447 | MDR-TB | lineage2.2.1 | None | SRR10341357 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR10303341 | MDR-TB | lineage2.2.1 | None | ERR552661 | MDR-TB | lineage2.2.1 | None | ERR550664 | MDR-TB | lineage2.2.1 | None | ERR3794512 | MDR-TB | lineage2.2.1 | None | ERR551295 | MDR-TB | lineage2.2.1 | None | ERR551610 | MDR-TB | lineage2.2.1 | None | ERR13258511 | Pre-XDR-TB | lineage2.1 | None | ERR553189 | MDR-TB | lineage2.2.1 | None | SRR13232649 | MDR-TB | lineage2.2.1 | None | ERR553393 | MDR-TB | lineage2.2.1 | None | ERR4831525 | Pre-XDR-TB | lineage3 | pk | SRR6785291 | Sensitive | lineage4.2.1.1 | None | ERR553183 | MDR-TB | lineage2.2.1 | None | ERR552883 | MDR-TB | lineage2.2.1 | None | ERR3794548 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800519 | MDR-TB | lineage4.1.2.1 | in | ERR552519_ERR552520 | MDR-TB | lineage2.2.1 | None | ERR551141 | MDR-TB | lineage2.2.1 | None | ERR552546 | MDR-TB | lineage2.2.1 | None | ERR552606 | MDR-TB | lineage2.2.1 | None | ERR552660 | MDR-TB | lineage2.2.1 | None | ERR3287480 | MDR-TB | lineage4.3.4.2 | pe | SRR28706638 | XDR-TB | lineage2.2.1 | None | ERR3287571 | MDR-TB | lineage4.1.2.1 | None | ERR3287669 | MDR-TB | lineage4.3.4.2 | pe | ERR4813660 | MDR-TB | lineage4 | None | ERR552446 | MDR-TB | lineage2.2.1 | None | SRR6832579 | MDR-TB | lineage2.2.1 | None | SRR24256009 | Pre-XDR-TB | lineage4.3.3 | None | SRR13232727 | Pre-XDR-TB | lineage4.3.3 | None | ERR552545 | MDR-TB | lineage2.2.1 | None | SRR18715095 | MDR-TB | lineage4.3.3 | None | ERR2984801 | MDR-TB | lineage4.1.1.3 | None | ERR2677438 | MDR-TB | lineage2.2.1 | de | SRR10808670 | Pre-XDR-TB | lineage4.3.2 | None | ERR553394 | MDR-TB | lineage2.2.1 | None | ERR551142_ERR551141 | MDR-TB | lineage2.2.1 | None | ERR550743 | MDR-TB | lineage2.2.1 | None | ERR552882 | MDR-TB | lineage2.2.1 | None | ERR553190 | MDR-TB | lineage2.2.1 | None | ERR550725_ERR550724 | MDR-TB | lineage2.2.1 | None | SRR13232540 | Pre-XDR-TB | lineage4.3.3 | None | SRR20969450 | MDR-TB | lineage2.2.1 | None | ERR4553922 | MDR-TB | lineage1.1.3.1 | None | ERR551133 | MDR-TB | lineage2.2.1 | None | ERR4822586 | Pre-XDR-TB | lineage2.2.1;lineage4.8 | tm | ERR550808 | MDR-TB | lineage2.2.1 | None | ERR552520 | MDR-TB | lineage2.2.1 | None | ERR552571 | MDR-TB | lineage2.2.1 | None | ERR3794520 | Pre-XDR-TB | lineage2.2.1 | None | ERR551781 | MDR-TB | lineage2.2.1 | None | ERR3794385 | MDR-TB | lineage2.2.1 | None | DRR130140 | MDR-TB | lineage2.2.1 | None | ERR551284_ERR551285 | MDR-TB | lineage2.2.1 | None | ERR552197 | MDR-TB | lineage2.2.1 | None | ERR552661_ERR552660 | MDR-TB | lineage2.2.1 | None | ERR10680043 | MDR-TB | lineage6.2.2 | None | DRR188869 | HR-TB | lineage2.2.1 | None | ERR3794467 | Pre-XDR-TB | lineage2.2.1 | None | ERR3794474 | Pre-XDR-TB | lineage2.2.1 | None | SRR29539650 | Pre-XDR-TB | lineage4.3.3 | None | SRR10430344 | Pre-XDR-TB | lineage2.2.1 | None | ERR551360 | MDR-TB | lineage2.2.1 | None | SRR24710139 | MDR-TB | lineage2.2.1 | None | SRR24256142 | MDR-TB | lineage2.2.1 | None | SRR24256160 | MDR-TB | lineage2.2.1 | None | ERR4827665 | MDR-TB | lineage2.2.1 | None | SRR23938641 | MDR-TB | lineage2.2.1 | None | ERR3794551 | MDR-TB | lineage2.2.1 | None | ERR551736 | MDR-TB | lineage2.2.1 | None | ERR3794382 | Pre-XDR-TB | lineage2.2.1 | None | ERR552883_ERR552882 | MDR-TB | lineage2.2.1 | None | ERR13261938 | Pre-XDR-TB | lineage4 | None | ERR552225 | MDR-TB | lineage2.2.1 | None | ERR550988_ERR550989_ERR550990 | MDR-TB | lineage2.2.1 | None | ERR553188 | MDR-TB | lineage2.2.1 | None | ERR552200 | MDR-TB | lineage2.2.1 | None | ERR552257 | MDR-TB | lineage2.2.1 | None | SRR18715136 | Pre-XDR-TB | lineage2.2.1 | None | SRR24255956 | Pre-XDR-TB | lineage4.3.3 | None | SRR29016864 | MDR-TB | lineage1.1.3.1 | None | ERR3794444 | Pre-XDR-TB | lineage2.2.1 | None | ERR551295_ERR551296 | MDR-TB | lineage2.2.1 | None | ERR13258444 | MDR-TB | lineage2.2.1 | None | ERR551735 | MDR-TB | lineage2.2.1 | None | ERR552897_ERR552896 | MDR-TB | lineage2.2.1 | None | SRR6832299 | MDR-TB | lineage4.3.3 | None | ERR5865043 | MDR-TB | lineage4.3.3 | None | ERR550999 | MDR-TB | lineage2.2.1 | None | ERR551285 | MDR-TB | lineage2.2.1 | None | ERR3794403 | MDR-TB | lineage2.2.1 | None | ERR552570_ERR552571_ERR552569 | MDR-TB | lineage2.2.1 | None | SRR29539833 | MDR-TB | lineage4.3.3 | None | ERR13258498 | Pre-XDR-TB | lineage2.1 | None | ERR551776 | MDR-TB | lineage2.2.1 | None | SRR29539825 | MDR-TB | lineage4.3.3 | None | SRR10430394 | MDR-TB | lineage2.2.1 | None | SRR29539599 | Pre-XDR-TB | lineage4.3.3 | None | ERR552215 | MDR-TB | lineage2.2.1 | None | ERR552258 | MDR-TB | lineage2.2.1 | None | ERR4798926 | MDR-TB | lineage1.1.2;lineage4.1.2.1 | in | ERR3794475 | MDR-TB | lineage2.2.1 | None | ERR552199 | MDR-TB | lineage2.2.1 | None | ERR5865045 | MDR-TB | lineage4.3.3 | None | ERR552257_ERR552258 | MDR-TB | lineage2.2.1 | None | ERR3794363 | Pre-XDR-TB | lineage2.2.1 | None | ERR3287505 | MDR-TB | lineage4 | None | ERR552607_ERR552606 | MDR-TB | lineage2.2.1 | None | SRR28339296 | Pre-XDR-TB | lineage2.2.1 | None | SRR28706453 | MDR-TB | lineage2.2.1 | None | SRR27069371 | Pre-XDR-TB | lineage2.2.1 | None | SRR12142350 | MDR-TB | lineage2.2.1 | None | ERR775335 | MDR-TB | lineage4.1.2.1 | pe | SAMEA2534869 | MDR-TB | lineage2.2.1 | uz | SAMEA2533754 | MDR-TB | lineage2.2.1 | uz | SAMEA2533423 | MDR-TB | lineage2.2.1 | uz | ERR067691 | MDR-TB | lineage4.2.1 | ru | ERR2516452 | Sensitive | lineage4.3.2 | pe | ERR2510135 | MDR-TB | lineage4.1.2.1 | pe | ERR234662 | HR-TB | lineage2.2.1 | ru | ERR234603 | Other | lineage2.2.1 | ru | SRR29539836 | MDR-TB | lineage4.3.3 | None | SRR16087927 | MDR-TB | lineage4.3.3 | None | SRR24255955 | MDR-TB | lineage2.2.1 | None | ERR5865589 | MDR-TB | lineage4.3.3 | None | ERR13276326 | MDR-TB | lineage4.3.3 | None | ERR552607 | MDR-TB | lineage2.2.1 | None | ERR11043757 | MDR-TB | lineage2.2.1 | None | ERR551172_ERR551173_ERR551171 | MDR-TB | lineage2.2.1 | None | SRR13232605 | MDR-TB | lineage2.2.1 | None | ERR551735_ERR551736 | MDR-TB | lineage2.2.1 | None | ERR3794391 | Pre-XDR-TB | lineage2.2.1 | None | ERR4797875 | MDR-TB | lineage4.1.2.1 | in | ERR552012 | MDR-TB | lineage2.2.1 | None | ERR2510656 | Pre-XDR-TB | lineage2.2.1 | it | SRR24256010 | Pre-XDR-TB | lineage4.3.3 | None | ERR13285168 | MDR-TB | lineage4.3.3 | None | ERR550988 | MDR-TB | lineage2.2.1 | None | ERR552519 | MDR-TB | lineage2.2.1 | None | ERR550990 | MDR-TB | lineage2.2.1 | None | ERR550808_ERR550809 | MDR-TB | lineage2.2.1 | None | ERR552198_ERR552199_ERR552197_ERR552200 | MDR-TB | lineage2.2.1 | None | ERR550736_ERR550735 | MDR-TB | lineage2.2.1 | None | ERR3794484 | Pre-XDR-TB | lineage2.2.1 | None | ERR551361 | MDR-TB | lineage2.2.1 | None | ERR13245563 | Pre-XDR-TB | lineage2.2.1 | None | ERR551780_ERR551781 | MDR-TB | lineage2.2.1 | None | ERR551362 | MDR-TB | lineage2.2.1 | None | ERR552011 | MDR-TB | lineage2.2.1 | None | SRR21732967 | Sensitive | lineage2.2.2 | None | ERR13266658 | Pre-XDR-TB | lineage3 | None | ERR552216 | MDR-TB | lineage2.2.1 | None | SRR10303316 | Pre-XDR-TB | lineage2.2.1 | None | ERR3794479 | Pre-XDR-TB | lineage2.2.1 | None | ERR553184 | MDR-TB | lineage2.2.1 | None | ERR13261665 | MDR-TB | lineage4.3.4.1 | None | ERR552390_ERR552389 | MDR-TB | lineage2.2.1 | None | SRR29539598 | Pre-XDR-TB | lineage4.3.3 | None | SRR24710065 | Pre-XDR-TB | lineage2.2.1 | None | ERR13276398 | MDR-TB | lineage2.2.1 | None | SRR12142329 | MDR-TB | lineage2.2.1 | None | SRR10040250 | XDR-TB | lineage2.2.2 | None | ERR3794446 | MDR-TB | lineage2.2.1 | None | ERR550744 | MDR-TB | lineage2.2.1 | None | ERR551495_ERR551496 | MDR-TB | lineage2.2.1 | None | SRR6832625 | MDR-TB | lineage4.3.3 | None | ERR552217 | MDR-TB | lineage2.2.1 | None | ERR5865042 | MDR-TB | lineage4.3.3 | None | ERR3794526 | Pre-XDR-TB | lineage2.2.1 | None | ERR550744_ERR550743 | MDR-TB | lineage2.2.1 | None | ERR551610_ERR551611 | MDR-TB | lineage2.2.1 | None | SRR6832261 | HR-TB | lineage4.3.3 | None | SRR28706380 | MDR-TB | lineage2.2.1 | None | SRR24256062 | Pre-XDR-TB | lineage4.3.3 | None | ERR13290903 | MDR-TB | lineage2.1 | None | SRR22873597 | Pre-XDR-TB | lineage2.2.1 | None | SRR24255954 | Pre-XDR-TB | lineage4.3.3 | None | SRR29539296 | MDR-TB | lineage2.2.1 | None | ERR552747_ERR552748_ERR552746 | MDR-TB | lineage2.2.1 | None | SRR28239955 | HR-TB | lineage4.3.3 | None | ERR552897 | MDR-TB | lineage2.2.1 | None | SRR28339298 | Pre-XDR-TB | lineage2.1 | None | ERR552011_ERR552012 | MDR-TB | lineage2.2.1 | None | DRR130077 | Pre-XDR-TB | lineage2.1 | None | ERR552586_ERR552585 | MDR-TB | lineage2.2.1 | None | ERR2184354 | Pre-XDR-TB | lineage4.3.2 | pe | SRR12142326 | MDR-TB | lineage2.2.1 | None | ERR551776_ERR551777_ERR551775 | MDR-TB | lineage2.2.1 | None | ERR550724 | MDR-TB | lineage2.2.1 | None | ERR552569 | MDR-TB | lineage2.2.1 | None | ERR4798952 | MDR-TB | lineage1.1.2;lineage4.1.2.1 | in | ERR4799059 | Pre-XDR-TB | lineage4.1.2.1 | in | ERR4822351 | MDR-TB | lineage2.2.1 | None | ERR552226 | MDR-TB | lineage2.2.1 | None | ERR552198 | MDR-TB | lineage2.2.1 | None | SRR24256033 | Pre-XDR-TB | lineage4.3.3 | None | ERR13194117 | MDR-TB | lineage2.2.2 | None | ERR553394_ERR553393 | MDR-TB | lineage2.2.1 | None | ERR3794389 | MDR-TB | lineage2.2.1 | None | ERR553195 | MDR-TB | lineage2.2.1 | None | SRR28706518 | XDR-TB | lineage2.2.1 | None | ERR4822594 | Pre-XDR-TB | lineage2.2.1;lineage4.8 | tm | DRR130217 | Pre-XDR-TB | lineage2.2.1 | None | ERR552570 | MDR-TB | lineage2.2.1 | None | ERR5865044 | MDR-TB | lineage4.3.3 | None | SRR13232755 | Pre-XDR-TB | lineage4.3.3 | None | SAMEA2533377 | MDR-TB | lineage2.2.1 | uz | SAMEA2533433 | MDR-TB | lineage2.2.1 | uz | SAMEA2533440 | MDR-TB | lineage2.2.1 | uz | SAMEA2533485 | MDR-TB | lineage2.2.1 | uz | SAMEA2533615 | MDR-TB | lineage2.2.1 | uz | SAMEA2533622 | MDR-TB | lineage2.2.1 | uz | SAMEA2533724 | MDR-TB | lineage2.2.1 | uz | SAMEA2533730 | MDR-TB | lineage2.2.1 | uz | ERR551145 | MDR-TB | lineage2.2.1 | uz | SAMEA2533835 | MDR-TB | lineage2.2.1 | uz | SAMEA2533843 | MDR-TB | lineage2.2.1 | uz | SAMEA2533887 | MDR-TB | lineage2.2.1 | uz | ERR551430 | MDR-TB | lineage2.2.1 | uz | SAMEA2533983 | MDR-TB | lineage2.2.1 | uz | SAMEA2534067 | MDR-TB | lineage2.2.1 | uz | SAMEA2534156 | MDR-TB | lineage2.2.1 | uz | SAMEA2534185 | MDR-TB | lineage2.2.1 | uz | SAMEA2534187 | MDR-TB | lineage2.2.1 | uz | SAMEA2534350 | MDR-TB | lineage2.2.1 | uz | SAMEA2534442 | MDR-TB | lineage2.2.1 | uz | SAMEA2534479 | MDR-TB | lineage2.2.1 | uz | SAMEA2534489 | MDR-TB | lineage2.2.1 | uz | SAMEA2534496 | MDR-TB | lineage2.2.1 | uz | SAMEA2534518 | MDR-TB | lineage2.2.1 | uz | SAMEA2534616 | MDR-TB | lineage2.2.1 | uz | ERR552441 | MDR-TB | lineage2.2.1 | uz | SAMEA2534654 | MDR-TB | lineage2.2.1 | uz | ERR552517 | MDR-TB | lineage2.2.1 | uz | SAMEA2534703 | MDR-TB | lineage2.2.1 | uz | SAMEA2534721 | MDR-TB | lineage2.2.1 | uz | SAMEA2534739 | MDR-TB | lineage2.2.1 | uz | SAMEA2534749 | MDR-TB | lineage2.2.1 | uz | SAMEA2534763 | MDR-TB | lineage2.2.1 | uz | SAMEA2534804 | MDR-TB | lineage2.2.1 | uz | SAMEA2534977 | MDR-TB | lineage2.2.1 | uz | SAMEA2534986 | MDR-TB | lineage2.2.1 | uz | SAMEA2535198 | MDR-TB | lineage2.2.1 | uz | SAMEA2535201 | MDR-TB | lineage2.2.1 | uz | SAMEA2535203 | MDR-TB | lineage2.2.1 | uz | SAMEA2535362 | MDR-TB | lineage2.2.1 | uz | SRR5709938 | Pre-XDR-TB | lineage4.3.4.2 | th | SRR21732968 | Sensitive | lineage2.2.2 | None | ERR550735 | MDR-TB | lineage2.2.1 | None | ERR552390 | MDR-TB | lineage2.2.1 | None | SRR28339295 | Pre-XDR-TB | lineage2.2.1 | None | DRR130078 | Pre-XDR-TB | lineage2.1 | None | ERR551284 | MDR-TB | lineage2.2.1 | None | ERR552144_ERR552143_ERR552142 | MDR-TB | lineage2.2.1 | None | ERR553189_ERR553188_ERR553190 | MDR-TB | lineage2.2.1 | None | ERR552143 | MDR-TB | lineage2.2.1 | None | ERR3794450 | Pre-XDR-TB | lineage2.2.1 | None | ERR551780 | MDR-TB | lineage2.2.1 | None | SRR28339297 | Pre-XDR-TB | lineage2.1 | None | ERR551362_ERR551360_ERR551361 | MDR-TB | lineage2.2.1 | None | ERR552447 | MDR-TB | lineage2.2.1 | None | ERR551496 | MDR-TB | lineage2.2.1 | None | ERR551000_ERR550999 | MDR-TB | lineage2.2.1 | None | SRR28706411 | Pre-XDR-TB | lineage2.2.1 | None | ERR550664_ERR550663 | MDR-TB | lineage2.2.1 | None | ERR10465911 | MDR-TB | lineage4.3.3 | None | ERR551132 | MDR-TB | lineage2.2.1 | None | SRR29539556 | MDR-TB | lineage2.2.1 | None | ERR550725 | MDR-TB | lineage2.2.1 | None | SRR6832411 | MDR-TB | lineage2.2.1 | None | ERR5865588 | MDR-TB | lineage4.3.3 | None | ERR550663 | MDR-TB | lineage2.2.1 | None | ERR553194 | MDR-TB | lineage2.2.1 | None | ERR551142 | MDR-TB | lineage2.2.1 | None | ERR551173 | MDR-TB | lineage2.2.1 | None | ERR552746 | MDR-TB | lineage2.2.1 | None | ERR552142 | MDR-TB | lineage2.2.1 | None | ERR11081850 | MDR-TB | lineage4.3.3 | None |
|---|
