Rv3262 - c.312G>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
30 Sensitive
2 RR-TB
16 HR-TB
25 MDR-TB
1 Pre-XDR-TB
0 XDR-TB
17 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage2.2.1 | 58 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| lineage4.2;lineage4.9 | 1 |
| lineage4.9;lineage6.3 | 3 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 2 |
| lineage2.1;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage2.1;lineage4.9 | 2 |
| 8 | |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage2.2.1.2 | 1 |
| M.canetti;lineage4.9 | 1 |
| lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage2.1 | 1 |
| La1.7;M.canetti;lineage4.9 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 91 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | ERR13259486 | Sensitive | lineage2.2.1 | None | SRR28868464 | HR-TB | lineage2.2.1 | None | ERR7975646 | MDR-TB | lineage2.2.1 | None | ERR13259302 | MDR-TB | lineage2.2.1 | None | SRR6046824 | MDR-TB | La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | None | SRR3675290 | Sensitive | lineage2.2.1 | None | ERR13259590 | Sensitive | lineage2.2.1 | None | ERR551007 | Sensitive | lineage2.2.1 | None | SRR3675234 | Other | La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | None | ERR13258824 | MDR-TB | lineage2.2.1 | None | SRR6046295 | HR-TB | lineage4.2;lineage4.9 | None | SRR25534258 | Sensitive | lineage2.2.1 | None | ERR13265528 | Other | lineage4.9;lineage6.3 | None | ERR13259886 | Sensitive | lineage2.2.1 | None | ERR13258797 | Sensitive | lineage2.2.1 | None | ERR3283024 | Other | La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | None | SRR10306029 | MDR-TB | lineage2.2.1 | None | SRR11662696 | MDR-TB | La1.6;La3;M.canetti;lineage4.2.2 | None | ERR4811022 | HR-TB | M.canetti;lineage2.1;lineage4.9 | None | ERR2693245 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR19303884 | Other | lineage2.1;lineage6.3 | None | SRR21686099 | Sensitive | lineage2.2.1 | None | ERR13258805 | Sensitive | lineage2.2.1 | None | ERR7975662 | MDR-TB | lineage2.2.1 | None | ERR5311103 | RR-TB | La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | None | ERR3275418 | MDR-TB | lineage2.2.1 | nl | SRR1723808 | MDR-TB | lineage2.2.1 | cn | SRR3675216 | Other | lineage2.1;lineage4.9 | None | ERR13259917 | Sensitive | lineage2.2.1 | None | ERR4811105 | HR-TB | None | ERR4811142 | RR-TB | None | ERR4810741 | HR-TB | None | ERR13259942 | Sensitive | lineage2.2.1 | None | ERR4811311 | Other | None | ERR3283020 | HR-TB | La1.6;La3;M.canetti;lineage2.1;lineage4.9 | None | ERR13291548 | Sensitive | lineage2.2.1 | None | ERR11049926 | Sensitive | lineage2.2.1 | None | ERR13258802 | MDR-TB | lineage2.2.1 | None | ERR7975682 | MDR-TB | lineage2.2.1 | None | ERR7975660 | MDR-TB | lineage2.2.1 | None | ERR13260080 | MDR-TB | lineage2.2.1 | None | ERR13259798 | Sensitive | lineage2.2.1 | None | ERR551006 | Sensitive | lineage2.2.1 | None | SRR28119811 | Other | lineage2.2.1 | None | SRR22251783 | HR-TB | lineage2.2.1 | None | SRR5341418 | Other | La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | None | ERR13259951 | Sensitive | lineage2.2.1 | None | ERR3797014 | Other | La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | None | SRR28119756 | Other | lineage4.9;lineage6.3 | None | ERR4407551 | Sensitive | lineage2.2.1 | None | ERR2516795 | MDR-TB | lineage2.2.1 | gb | ERR2516888 | MDR-TB | lineage2.2.1 | gb | ERR2517117 | MDR-TB | lineage2.2.1 | gb | ERR2516963 | MDR-TB | lineage2.2.1 | gb | ERR2516330 | MDR-TB | lineage2.2.1 | be | ERR2516536 | MDR-TB | lineage2.2.1 | nl | ERR2516718 | MDR-TB | lineage2.2.1 | nl | ERR13258710 | Sensitive | lineage2.2.1 | None | ERR4797054 | Pre-XDR-TB | lineage2.2.1.2 | None | ERR11081217 | Sensitive | lineage2.2.1 | None | ERR2517436 | MDR-TB | lineage2.2.1 | nl | ERR11043748 | Sensitive | lineage2.2.1 | None | ERR3797028 | HR-TB | M.canetti;lineage4.9 | None | SRR6044790 | Other | lineage2.1;lineage4.9 | None | ERR13259256 | Sensitive | lineage2.2.1 | None | ERR13284508 | Sensitive | lineage2.2.1 | None | ERR13259573 | Sensitive | lineage2.2.1 | None | DRR474200 | Sensitive | lineage2.2.1 | None | SRR26159043 | Other | lineage4.9 | None | SRR22249427 | Sensitive | lineage2.2.1 | None | ERR4811075 | Other | None | ERR4798406 | MDR-TB | La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | None | SRR12142341 | HR-TB | lineage2.2.1 | None | SRR12416824 | HR-TB | None | ERR13259939 | HR-TB | lineage2.2.1 | None | SRR20969677 | HR-TB | lineage2.1 | None | ERR13265748 | Other | lineage4.9;lineage6.3 | None | ERR13259941 | Sensitive | lineage2.2.1 | None | ERR13259923 | Sensitive | lineage2.2.1 | None | SRR29681299 | Sensitive | lineage2.2.1 | None | SRR25827682 | Other | None | ERR736835 | HR-TB | La1.7;M.canetti;lineage4.9 | None | SAMEA2533628 | Sensitive | lineage2.2.1 | pl | ERR1034652 | Other | La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | None | ERR13259277 | MDR-TB | lineage2.2.1 | None | ERR13259948 | Sensitive | lineage2.2.1 | None | ERR13259775 | HR-TB | lineage2.2.1 | None | ERR2446280 | MDR-TB | lineage2.2.1 | nl | ERR13259313 | MDR-TB | lineage2.2.1 | None | SRR6046644 | HR-TB | La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | None | SRR3675236 | Other | None |
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