lineage | Count |
---|---|
lineage4.8 | 3 |
lineage2.2.1 | 20 |
lineage4.3.4.2.1 | 8 |
lineage4.3.2.1 | 6 |
lineage3 | 25 |
lineage4.1.2 | 7 |
lineage1.1.2 | 5 |
lineage4.1 | 1 |
La1.2.BCG | 1 |
lineage4.3.2.1;lineage3.1.1 | 1 |
lineage4.9.1 | 1 |
lineage1.1.3.2 | 3 |
lineage3.1.1 | 3 |
lineage1.1.3 | 1 |
lineage4.1.1.3 | 2 |
lineage4.1.2.1 | 4 |
lineage1.1.1.1 | 2 |
lineage4.8.2 | 2 |
lineage4.5 | 1 |
lineage4.3.1.1 | 1 |
lineage4.9 | 8 |
lineage4.3.3 | 5 |
lineage4.6.1.1 | 1 |
lineage2.2.2 | 2 |
lineage4.3.2 | 1 |
lineage4.3.2;lineage4.1.2.1 | 1 |
lineage1.1.3.1 | 2 |
lineage4.6.1 | 1 |
lineage5 | 1 |
lineage4.1.3 | 1 |
lineage4.3.4.1;lineage1.1.2 | 1 |
lineage4.6.1.2 | 1 |
lineage4.2.2.2 | 1 |
lineage4.1.1 | 5 |
La1.8.1 | 4 |
lineage3.1.2 | 6 |
lineage4.4.1.1 | 1 |
lineage1.2.2.1 | 1 |
lineage4.1.1.1;lineage2.2.2 | 1 |
lineage2.2.1.2 | 3 |
La1.7.1 | 3 |
lineage1.2.1.1 | 1 |
lineage7 | 3 |
lineage4.4.2 | 1 |
lineage1.1.1 | 1 |
spoligotype | Count |
---|---|
None | 153 |
ID | Drug resistance | Lineage | Country iso2 | ERR841400 | Other | lineage4.8 | None | SRR4034100 | Sensitive | lineage2.2.1 | None | ERR216970 | Sensitive | lineage4.3.4.2.1 | None | SRR4033394 | Sensitive | lineage2.2.1 | None | SRR4033505 | Other | lineage4.3.2.1 | None | SRR4033494 | Sensitive | lineage4.3.2.1 | None | SRR4035559 | RR-TB | lineage3 | None | SRR4035542 | RR-TB | lineage3 | None | SRR4034564 | Sensitive | lineage4.1.2 | None | ERR245675 | Sensitive | lineage1.1.2 | None | SRR4035790 | Sensitive | lineage4.1.2 | None | SRR4035789 | HR-TB | lineage4.1 | None | ERR234151 | Other | La1.2.BCG | None | SRR4035872 | HR-TB | lineage4.3.2.1 | None | ERR245794 | HR-TB | lineage4.3.4.2.1 | None | ERR245716 | Sensitive | lineage2.2.1 | None | SRR4037588 | Sensitive | lineage4.3.2.1 | None | ERR245740 | Sensitive | lineage4.1.2 | None | ERR245801 | Other | lineage4.3.4.2.1 | None | ERR245795 | Sensitive | lineage4.3.2.1;lineage3.1.1 | None | ERR245810 | Sensitive | lineage4.9.1 | None | ERR245821 | Other | lineage4.3.4.2.1 | None | ERR245817 | Sensitive | lineage1.1.3.2 | None | ERR245815 | Sensitive | lineage4.3.4.2.1 | None | ERR245819 | Other | lineage3.1.1 | None | ERR245820 | Sensitive | lineage1.1.3.2 | None | ERR245825 | Sensitive | lineage1.1.3 | None | ERR245822 | Other | lineage1.1.3.2 | None | ERR245823 | Sensitive | lineage4.1.1.3 | None | SRR413213 | RR-TB | lineage2.2.1 | None | SRR4037818 | MDR-TB | lineage2.2.1 | None | SRR4037846 | RR-TB | lineage4.3.2.1 | None | SRR4037810 | Sensitive | lineage2.2.1 | None | SRR413231 | MDR-TB | lineage2.2.1 | None | SRR413216 | MDR-TB | lineage2.2.1 | None | ERR1200628 | Sensitive | lineage4.1.2.1 | None | ERR233352 | Sensitive | lineage4.1.2.1 | None | ERR270634 | Sensitive | lineage1.1.1.1 | None | ERR270628 | Sensitive | lineage4.8.2 | None | ERR270638 | Sensitive | lineage3 | None | ERR270698 | HR-TB | lineage4.5 | None | ERR270644 | Sensitive | lineage1.1.2 | None | ERR270803 | HR-TB | lineage1.1.2 | None | ERR266583 | Sensitive | lineage4.3.1.1 | None | ERR270705 | HR-TB | lineage4.1.2 | None | ERR027466 | Sensitive | lineage4.9 | None | SRR611426 | MDR-TB | lineage2.2.1 | None | ERR501641 | Sensitive | lineage4.3.2.1 | None | SRR857291 | MDR-TB | lineage4.3.3 | None | SRR7535059 | Sensitive | lineage4.6.1.1 | None | ERR019556 | Pre-XDR-TB | lineage2.2.1 | None | ERR025832 | Sensitive | lineage3 | None | SRR611417 | MDR-TB | lineage2.2.1 | None | ERR501646 | Other | lineage2.2.2 | None | SRR857286 | MDR-TB | lineage4.3.3 | None | SRR857290 | MDR-TB | lineage4.3.3 | None | ERR024341 | Sensitive | lineage4.3.2 | None | ERR025413 | Sensitive | lineage4.3.2;lineage4.1.2.1 | None | ERR028325 | Sensitive | lineage1.1.3.1 | None | ERR028339 | Sensitive | lineage3 | None | ERR028330 | Sensitive | lineage4.6.1 | None | ERR028333 | Sensitive | lineage1.1.2 | None | ERR028346 | Sensitive | lineage5 | None | ERR028365 | Sensitive | lineage4.1.3 | None | ERR040092 | Sensitive | lineage3.1.1 | None | ERR028606 | Other | lineage4.1.2 | None | ERR036233 | Sensitive | lineage4.3.4.1;lineage1.1.2 | None | ERR037501 | Sensitive | lineage4.3.4.2.1 | None | ERR038289 | Other | lineage4.3.3 | None | ERR036194 | Other | lineage4.6.1.2 | None | ERR036237 | Sensitive | lineage4.3.4.2.1 | None | ERR037529 | Other | lineage4.3.4.2.1 | None | ERR038267 | Sensitive | lineage4.2.2.2 | None | ERR046740 | Sensitive | lineage4.1.1 | None | ERR046731 | Sensitive | lineage4.1.1 | None | ERR046750 | Other | La1.8.1 | None | ERR046742 | Sensitive | lineage4.1.1 | None | ERR046802 | Sensitive | lineage3.1.2 | None | ERR046774 | Other | La1.8.1 | None | ERR046801 | Sensitive | lineage3 | None | ERR046803 | Sensitive | lineage3 | None | ERR046810 | Sensitive | lineage3.1.2 | None | ERR046805 | Sensitive | lineage3 | None | ERR046812 | Sensitive | lineage3 | None | ERR046807 | Sensitive | lineage3 | None | ERR046806 | Sensitive | lineage3 | None | ERR046809 | Sensitive | lineage3 | None | ERR046811 | Sensitive | lineage3 | None | ERR046813 | Sensitive | lineage3 | None | ERR046816 | Other | lineage3.1.2 | None | ERR046808 | Sensitive | lineage3 | None | ERR046814 | Sensitive | lineage3 | None | ERR046804 | Sensitive | lineage3 | None | ERR046817 | Sensitive | lineage4.9 | None | ERR046815 | Sensitive | lineage3.1.2 | None | ERR046826 | Sensitive | lineage3 | None | ERR046818 | Sensitive | lineage3.1.2 | None | ERR046829 | Sensitive | lineage3 | None | ERR046830 | Sensitive | lineage3.1.2 | None | ERR046827 | Sensitive | lineage3 | None | ERR046931 | Sensitive | lineage4.1.1 | None | ERR046835 | Sensitive | lineage4.4.1.1 | None | ERR046886 | Sensitive | lineage1.2.2.1 | None | ERR046896 | Sensitive | lineage1.1.2 | None | ERR046899 | Sensitive | lineage4.8 | None | ERR046909 | Sensitive | lineage4.9 | None | ERR046902 | Sensitive | lineage4.1.1.3 | None | ERR046973 | Sensitive | lineage4.1.2.1 | None | ERR046955 | Sensitive | lineage4.1.2.1 | None | ERR046956 | Sensitive | lineage4.9 | None | ERR046977 | MDR-TB | lineage4.8 | None | ERR046976 | Sensitive | lineage4.1.1 | None | ERR046979 | Sensitive | lineage3 | None | ERR046987 | Sensitive | lineage3 | None | SRR1182994 | Sensitive | lineage4.1.2 | None | SRR1165218 | MDR-TB | lineage4.1.1.1;lineage2.2.2 | None | SRR070023 | HR-TB | lineage1.1.1.1 | None | SRR125289 | Sensitive | lineage2.2.1.2 | None | SRR125284 | Sensitive | lineage2.2.1.2 | None | SRR125293 | Sensitive | lineage2.2.1 | None | SRR125292 | Sensitive | lineage2.2.1 | None | SRR125296 | HR-TB | lineage2.2.2 | None | SRR125302 | Sensitive | lineage2.2.1 | None | SRR125308 | Sensitive | lineage2.2.1 | None | SRR125303 | Sensitive | lineage2.2.1 | None | SRR13861178 | RR-TB | lineage4.9 | None | SRR125307 | Sensitive | lineage2.2.1.2 | None | SRR15722960 | MDR-TB | lineage2.2.1 | None | SRR15723140 | MDR-TB | lineage2.2.1 | None | SRR1792002 | Other | La1.7.1 | None | SRR158090 | Sensitive | lineage4.9 | None | SRR158092 | Sensitive | lineage4.9 | None | SRR158093 | Sensitive | lineage4.9 | None | SRR15723157 | MDR-TB | lineage2.2.1 | None | SRR1791828 | Other | La1.8.1 | None | SRR1792499 | Other | La1.7.1 | None | SRR1792059 | Other | La1.8.1 | None | SRR1792073 | Other | La1.7.1 | None | SRR18213914 | Sensitive | lineage4.8.2 | None | SRR18213886 | Sensitive | lineage1.2.1.1 | None | SRR18213753 | Sensitive | lineage3.1.1 | None | SRR18213905 | MDR-TB | lineage2.2.1 | None | SRR2100089 | Sensitive | lineage3 | None | SRR18213944 | Sensitive | lineage3 | None | SRR18213964 | HR-TB | lineage4.1.2 | None | SRR2100067 | Other | lineage4.3.3 | None | SRR6650366 | Sensitive | lineage1.1.3.1 | None | ERR1200618 | Sensitive | lineage7 | None | ERR1200603 | Sensitive | lineage7 | None | SRR2467265 | Sensitive | lineage3 | None | SRR2467264 | Sensitive | lineage4.4.2 | None | ERR233363 | Sensitive | lineage1.1.1 | None | ERR233346 | Sensitive | lineage7 | None |
---|