lineage | Count |
---|---|
lineage4.1.1.3 | 4 |
lineage2.2.1 | 26 |
lineage2.2.1;lineage4.9 | 1 |
lineage4.3.4.2 | 23 |
lineage4.2.1 | 9 |
lineage2.2.2 | 4 |
lineage2.2.1;lineage4.2.1 | 1 |
lineage4.1.2.1 | 5 |
lineage4.1.2 | 5 |
lineage3 | 1 |
lineage2.1 | 1 |
spoligotype | Count |
---|---|
None | 80 |
ID | Drug resistance | Lineage | Country iso2 | ERR5918046 | XDR-TB | lineage4.1.1.3 | za | ERR13266739 | Pre-XDR-TB | lineage2.2.1 | None | SRR6831882 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865035 | Pre-XDR-TB | lineage2.2.1 | None | SRR29274734 | Pre-XDR-TB | lineage2.2.1 | None | SRR5341236 | Other | lineage2.2.1;lineage4.9 | in | ERR1034859 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR10380057 | Pre-XDR-TB | lineage4.2.1 | None | ERR7911744 | Pre-XDR-TB | lineage2.2.1 | us | ERR1034837 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR2515872 | Pre-XDR-TB | lineage4.1.1.3 | za | ERR1034888 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1034910 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR2515144 | Pre-XDR-TB | lineage2.2.2 | za | ERR10610214 | Pre-XDR-TB | lineage2.2.2 | None | ERR1034829 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR13180411 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR9993146 | XDR-TB | lineage4.1.1.3 | None | ERR12311996 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR5865033 | Pre-XDR-TB | lineage2.2.1 | None | ERR5865036 | Pre-XDR-TB | lineage2.2.1 | None | ERR13288830 | XDR-TB | lineage4.1.1.3 | None | ERR2307364 | Pre-XDR-TB | lineage2.2.1 | None | SRR14782507 | XDR-TB | lineage2.2.1;lineage4.2.1 | None | SRR7765062 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR5865300 | Pre-XDR-TB | lineage2.2.1 | None | SRR6807718 | Pre-XDR-TB | lineage4.2.1 | None | ERR4796601 | Pre-XDR-TB | lineage2.2.1 | in | SAMN02584596 | Pre-XDR-TB | lineage2.2.1 | md | SRR10303330 | Pre-XDR-TB | lineage2.2.1 | None | SRR14801602 | MDR-TB | lineage4.2.1 | None | ERR2864267 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR1165297 | MDR-TB | lineage4.1.2 | None | ERR2864276 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR28498452 | XDR-TB | lineage4.2.1 | None | SRR29273829 | XDR-TB | lineage4.1.2.1 | None | ERR5865034 | Pre-XDR-TB | lineage2.2.1 | None | ERR10748235 | Pre-XDR-TB | lineage2.2.2 | None | SRR29289406 | Pre-XDR-TB | lineage3 | None | SRR1169159 | Pre-XDR-TB | lineage2.2.1 | None | ERR8774585 | Pre-XDR-TB | lineage2.2.1 | None | SRR3743498 | Pre-XDR-TB | lineage4.2.1 | None | ERR2864298 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR1034825 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR3085322 | Pre-XDR-TB | lineage4.1.2.1 | None | DRR130241 | Pre-XDR-TB | lineage2.2.1 | None | ERR1036276 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR4800653 | Pre-XDR-TB | lineage2.2.1 | None | SRR1173820 | MDR-TB | lineage4.1.2 | None | SRR7516391 | Pre-XDR-TB | lineage2.2.1 | None | ERR1227522 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR2864287 | Pre-XDR-TB | lineage4.3.4.2 | pt | ERR7911421 | Pre-XDR-TB | lineage2.2.1 | us | SRR28044935 | XDR-TB | lineage2.2.1 | None | SRR5341292 | HR-TB | lineage2.2.1 | in | ERR4829045 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR13261333 | XDR-TB | lineage4.3.4.2 | None | ERR13291064 | HR-TB | lineage2.1 | None | ERR6326071 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR2516901 | Pre-XDR-TB | lineage4.3.4.2 | gb | ERR6662371 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR1167303 | MDR-TB | lineage4.1.2 | None | SRR7765350 | Pre-XDR-TB | lineage4.1.2.1 | None | ERR1034870 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR10380068 | Pre-XDR-TB | lineage2.2.1 | None | ERR2307715 | Pre-XDR-TB | lineage2.2.1 | None | ERR2516752 | Pre-XDR-TB | lineage4.3.4.2 | gb | SRR1173542 | MDR-TB | lineage4.1.2 | None | ERR4872299 | XDR-TB | lineage4.2.1 | None | SAMN02403637 | MDR-TB | lineage4.1.2 | za | SRR6511601 | Pre-XDR-TB | lineage4.3.4.2 | None | ERR2515768 | Pre-XDR-TB | lineage2.2.2 | za | ERR2516990 | Pre-XDR-TB | lineage4.3.4.2 | gb | ERR5865301 | Pre-XDR-TB | lineage2.2.1 | None | ERR4800682 | Pre-XDR-TB | lineage2.2.1 | None | ERR10762431 | Pre-XDR-TB | lineage4.2.1 | None | SRR28351634 | XDR-TB | lineage4.2.1 | None | SRR28498697 | XDR-TB | lineage4.2.1 | None | ERR2864293 | Pre-XDR-TB | lineage4.3.4.2 | pt | SRR10430383 | Pre-XDR-TB | lineage2.2.1 | None |
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