Rv3457c - c.-113_-107delCAACCCA
Drug resistance types
142 Sensitive
6 RR-TB
65 HR-TB
32 MDR-TB
5 Pre-XDR-TB
0 XDR-TB
14 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.1.1.1 | 191 |
| lineage3 | 9 |
| lineage4.6.2 | 10 |
| lineage2.2.1 | 25 |
| lineage4.3.3 | 1 |
| lineage4.1.2 | 5 |
| lineage4.1.1.1;lineage4.1.2.1 | 1 |
| lineage4.3 | 7 |
| lineage4.1.3;lineage6.3.1 | 2 |
| lineage4.2.2.2 | 2 |
| lineage4.7 | 2 |
| lineage4.6 | 1 |
| lineage4.3.4.2.1 | 1 |
| lineage4.4.2 | 1 |
| lineage4.3.4.1 | 2 |
| lineage6.1.3 | 1 |
| lineage4.2.2 | 1 |
| lineage4.3.2 | 1 |
| lineage1.1.2 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 264 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
| ID | Drug resistance | Lineage | Country iso2 | SRR6397924 | HR-TB | lineage4.1.1.1 | ca | SRR6398110 | HR-TB | lineage4.1.1.1 | ca | SRR2100471 | Sensitive | lineage3 | None | SRR2100934 | Sensitive | lineage3 | None | SRR28409424 | Sensitive | lineage4.1.1.1 | None | SRR28351177 | HR-TB | lineage4.1.1.1 | None | SRR28683948 | HR-TB | lineage4.1.1.1 | None | SRR2100386 | HR-TB | lineage4.1.1.1 | None | SRR6152712 | Sensitive | lineage4.1.1.1 | ca | SRR28045453 | Sensitive | lineage4.1.1.1 | None | ERR2512559 | Sensitive | lineage4.1.1.1 | gb | ERR2513350 | Sensitive | lineage4.6.2 | gb | SRR5341344 | Sensitive | lineage4.6.2 | in | SRR28046225 | Sensitive | lineage4.1.1.1 | None | SRR29772540 | MDR-TB | lineage3 | None | ERR9119824 | HR-TB | lineage4.1.1.1 | None | ERR4830188 | Sensitive | lineage2.2.1 | vn | ERR039327 | Sensitive | lineage4.1.1.1 | gb | ERR1035021 | RR-TB | lineage4.1.1.1 | za | ERR114497 | HR-TB | lineage4.1.1.1 | None | SRR6398001 | HR-TB | lineage4.1.1.1 | ca | SRR6398048 | HR-TB | lineage4.1.1.1 | ca | SRR10305697 | Sensitive | lineage2.2.1 | None | SRR6398071 | Sensitive | lineage4.1.1.1 | ca | ERR4798848 | Sensitive | lineage4.1.1.1 | in | ERR117693 | Sensitive | lineage4.1.1.1 | None | SRR28381191 | Sensitive | lineage4.1.1.1 | None | ERR270762 | Sensitive | lineage4.1.1.1 | None | SRR6397593 | HR-TB | lineage4.1.1.1 | ca | SRR6398055 | Sensitive | lineage4.1.1.1 | ca | SRR26399926 | Sensitive | lineage2.2.1 | None | ERR040109 | Sensitive | lineage4.1.1.1 | gb | SRR28409385 | Sensitive | lineage4.1.1.1 | None | ERR2513142 | Sensitive | lineage4.6.2 | gb | ERR2514268 | Sensitive | lineage4.1.1.1 | gb | ERR2514367 | Sensitive | lineage4.1.1.1 | gb | ERR9119355 | Sensitive | lineage2.2.1 | None | ERR2653208 | MDR-TB | lineage4.1.1.1 | None | SRR29831042 | Sensitive | lineage4.1.1.1 | None | SRR6397347 | HR-TB | lineage4.1.1.1 | ca | SRR6398123 | HR-TB | lineage4.1.1.1 | ca | ERR2512387 | Sensitive | lineage4.1.1.1 | gb | SRR6152644 | HR-TB | lineage4.1.1.1 | ca | ERR1035114 | Sensitive | lineage2.2.1 | vn | SRR6397979 | HR-TB | lineage4.1.1.1 | None | SRR2100936 | Sensitive | lineage4.1.1.1 | None | ERR9119318 | Other | lineage4.1.1.1 | None | SRR19128040 | Sensitive | lineage4.3.3 | None | SRR12634606 | Other | lineage4.1.1.1 | None | ERR9806963 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR6397725 | Sensitive | lineage2.2.1 | ca | SRR6397487 | HR-TB | lineage4.1.1.1 | ca | SRR28389876 | Sensitive | lineage4.1.1.1 | None | SRR25340843 | Other | lineage4.1.2 | None | ERR2512805 | Sensitive | lineage4.1.1.1;lineage4.1.2.1 | gb | SRR30340070 | Sensitive | lineage4.1.1.1 | None | SRR6398134 | HR-TB | lineage4.1.1.1 | ca | SRR28858632 | Sensitive | lineage4.1.1.1 | None | ERR108152 | Sensitive | lineage4.1.1.1 | za | ERR6865985 | Sensitive | lineage4.3 | None | ERR13266656 | Sensitive | lineage4.1.1.1 | None | SRR30296333 | MDR-TB | lineage4.1.1.1 | None | SRR6397537 | Sensitive | lineage4.1.1.1 | ca | SRR15364433 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR2469376 | Sensitive | lineage4.1.1.1 | None | ERR9119329 | Sensitive | lineage2.2.1 | None | SRR2100499 | HR-TB | lineage3 | None | ERR4799561 | Sensitive | lineage4.1.1.1 | in | SRR6397996 | HR-TB | lineage4.1.1.1 | ca | ERR2513236 | Sensitive | lineage4.1.1.1 | gb | SRR6398103 | HR-TB | lineage4.1.1.1 | ca | SRR2100864 | Sensitive | lineage4.1.1.1 | None | SRR28046006 | Sensitive | lineage4.1.1.1 | None | ERR9119902 | MDR-TB | lineage4.1.1.1 | None | SAMN02414939 | MDR-TB | lineage4.1.1.1 | se | SRR998741 | MDR-TB | lineage4.1.3;lineage6.3.1 | None | SRR6397759 | HR-TB | lineage4.1.1.1 | ca | ERR2514480 | Sensitive | lineage4.1.1.1 | gb | ERR2513627 | Sensitive | lineage4.1.1.1 | gb | ERR2513337 | Sensitive | lineage4.1.1.1 | gb | ERR8025617 | Pre-XDR-TB | lineage4.1.1.1 | None | SAMN02599097 | Sensitive | lineage2.2.1 | in | SRR2100481 | Sensitive | lineage4.1.1.1 | None | SRR6389900 | Sensitive | lineage4.1.1.1 | gt | SRR28558429 | Sensitive | lineage4.1.1.1 | None | ERR294252 | Sensitive | lineage4.1.1.1 | None | SRR6398029 | HR-TB | lineage4.1.1.1 | ca | ERR046943 | RR-TB | lineage4.1.1.1 | gb | SRR26112522 | Sensitive | lineage4.1.1.1 | None | SRR28357663 | Sensitive | lineage4.1.1.1 | None | ERR2516972 | MDR-TB | lineage4.2.2.2 | gb | ERR2512665 | Sensitive | lineage4.1.1.1 | gb | ERR046971 | Sensitive | lineage4.1.1.1 | gb | SRR2100255 | Sensitive | lineage4.1.1.1 | None | ERR2513822 | Sensitive | lineage4.1.1.1 | gb | ERR2653235 | MDR-TB | lineage4.1.1.1 | None | ERR4025110 | Sensitive | lineage4.3 | None | SRR29094405 | Sensitive | lineage4.1.1.1 | None | SRR2101042 | Sensitive | lineage4.1.1.1 | None | ERR072034 | Sensitive | lineage4.1.1.1 | gb | ERR1213945 | HR-TB | lineage4.1.1.1 | bd | ERR228118 | Sensitive | lineage4.1.1.1 | None | ERR2513937 | Sensitive | lineage4.1.1.1 | gb | ERR6865647 | Sensitive | lineage4.3 | None | ERR8975883 | RR-TB | lineage4.1.1.1 | None | SRR6152665 | HR-TB | lineage4.1.1.1 | ca | SRR26399422 | Sensitive | lineage2.2.1 | None | SRR28393605 | MDR-TB | lineage4.1.1.1 | None | ERR2514532 | Sensitive | lineage4.1.1.1 | gb | ERR2653231 | MDR-TB | lineage4.1.1.1 | None | ERR4178187 | Sensitive | lineage4.3 | None | SRR26399211 | Sensitive | lineage2.2.1 | None | ERR108141 | Sensitive | lineage4.7 | za | ERR114448 | Sensitive | lineage3 | None | ERR2514049 | Other | lineage4.6.2 | gb | ERR2514378 | Sensitive | lineage4.1.1.1 | gb | ERR2653120 | MDR-TB | lineage4.1.1.1 | None | SRR6398044 | HR-TB | lineage4.1.1.1 | ca | ERR11067344 | Sensitive | lineage4.2.2.2 | None | SRR11444389 | Sensitive | lineage4.6 | None | ERR230090 | Sensitive | lineage4.1.1.1 | None | ERR2513456 | Sensitive | lineage4.6.2 | gb | SRR29464854 | HR-TB | lineage4.1.1.1 | None | SRR6397735 | HR-TB | lineage4.1.1.1 | ca | ERR9119366 | HR-TB | lineage2.2.1 | None | ERR8699772 | Sensitive | lineage4.1.1.1 | None | ERR7801331 | Sensitive | lineage4.3.4.2.1 | None | ERR108154 | Sensitive | lineage4.1.1.1 | za | SRR6397786 | HR-TB | lineage4.1.1.1 | ca | SRR6397595 | Sensitive | lineage4.1.1.1 | ca | SRR6397993 | HR-TB | lineage4.1.1.1 | ca | ERR072036 | Sensitive | lineage4.1.1.1 | gb | ERR2514492 | Sensitive | lineage4.1.1.1 | gb | ERR279494 | Sensitive | lineage4.1.1.1 | None | SRR6397513 | HR-TB | lineage4.1.1.1 | ca | ERR5987431 | MDR-TB | lineage4.1.1.1 | None | SRR2100325 | HR-TB | lineage4.1.1.1 | None | ERR1035132 | Sensitive | lineage2.2.1 | vn | ERR8975580 | HR-TB | lineage4.1.1.1 | None | SRR25534315 | Sensitive | lineage4.4.2 | None | ERR9119354 | Other | lineage4.1.2 | None | SRR2100332 | HR-TB | lineage4.1.1.1 | None | ERR10748178 | MDR-TB | lineage4.1.1.1 | None | ERR2514900 | Sensitive | lineage4.1.1.1 | gb | ERR275231 | Sensitive | lineage4.3.4.1 | pt | ERR4830293 | Sensitive | lineage2.2.1 | vn | SRR6397998 | HR-TB | lineage4.1.1.1 | ca | ERR8975881 | Sensitive | lineage4.1.1.1 | None | ERR13261339 | MDR-TB | lineage4.1.1.1 | None | ERR4799531 | Sensitive | lineage4.1.1.1 | None | ERR072017 | MDR-TB | lineage4.1.1.1 | None | ERR228106 | Sensitive | lineage3 | None | ERR278549 | Sensitive | lineage4.1.1.1 | None | SRR2100910 | Sensitive | lineage4.1.1.1 | None | ERR386821 | Sensitive | lineage4.1.1.1 | None | ERR039329 | Sensitive | lineage4.1.1.1 | gb | ERR1664645 | MDR-TB | lineage4.1.1.1 | None | SRR26399182 | Other | lineage4.1.1.1 | None | SRR6397529 | HR-TB | lineage4.1.1.1 | ca | SRR6398064 | HR-TB | lineage4.1.1.1 | ca | SRR29831038 | Sensitive | lineage4.1.1.1 | None | ERR117736 | HR-TB | lineage4.1.1.1 | None | ERR1555051 | MDR-TB | lineage4.1.1.1 | None | SRR29893824 | HR-TB | lineage4.1.1.1 | None | SRR7069303 | Other | lineage4.6.2 | None | ERR278523 | Sensitive | lineage4.1.1.1 | None | SRR6397531 | HR-TB | lineage4.1.1.1 | ca | SRR6397915 | HR-TB | lineage4.1.1.1 | ca | SRR6397799 | HR-TB | lineage4.1.1.1 | ca | SRR6397618 | Sensitive | lineage2.2.1 | ca | ERR046924 | Sensitive | lineage4.1.1.1 | gb | ERR1274662 | HR-TB | lineage4.1.1.1 | None | ERR2653207 | MDR-TB | lineage4.1.1.1 | None | ERR039328 | Sensitive | lineage4.1.1.1 | gb | ERR4813916 | MDR-TB | lineage4.1.1.1 | br | ERR4830337 | Sensitive | lineage2.2.1 | vn | ERR10748548 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR1173623 | Sensitive | lineage2.2.1 | None | ERR228137 | HR-TB | lineage3 | None | ERR6362606 | HR-TB | lineage4.1.1.1 | None | ERR278547 | Sensitive | lineage3 | None | ERR2513060 | Sensitive | lineage4.1.1.1 | gb | SRR29219664 | Sensitive | lineage4.1.1.1 | None | ERR8975735 | Sensitive | lineage4.1.1.1 | None | ERR2653219 | MDR-TB | lineage4.1.1.1 | None | SRR28044687 | Other | lineage4.1.1.1 | None | SRR29666885 | Sensitive | lineage4.1.1.1 | None | SRR28045952 | Sensitive | lineage4.1.1.1 | None | ERR4812317 | Sensitive | lineage4.3 | pe | SRR6397539 | HR-TB | lineage4.1.1.1 | ca | SRR6397967 | HR-TB | lineage4.1.1.1 | ca | ERR108142 | Sensitive | lineage4.7 | za | ERR1274661 | HR-TB | lineage4.1.1.1 | None | ERR1035250 | Sensitive | lineage4.3.4.1 | pt | ERR2512687 | Sensitive | lineage4.6.2 | gb | ERR9119295 | Sensitive | lineage2.2.1 | None | ERR3148203 | RR-TB | lineage4.1.1.1 | mx | SRR6397757 | HR-TB | lineage4.1.1.1 | ca | ERR2513947 | Sensitive | lineage4.1.1.1 | gb | ERR400333 | Sensitive | lineage4.6.2 | gb | SRR6397350 | HR-TB | lineage4.1.1.1 | ca | SRR6398105 | HR-TB | lineage4.1.1.1 | ca | SRR10695721 | HR-TB | lineage4.6.2 | None | SRR11461654 | Other | lineage4.1.2 | None | SRR29831046 | Sensitive | lineage4.1.1.1 | None | ERR114484 | HR-TB | lineage4.1.1.1 | None | SRR2100714 | Sensitive | lineage4.1.1.1 | None | SRR6398084 | HR-TB | lineage4.1.1.1 | ca | SRR2469378 | MDR-TB | lineage4.1.1.1 | None | ERR4830257 | Other | lineage4.1.2 | vn | SRR6398124 | HR-TB | lineage4.1.1.1 | ca | ERR9119376 | Sensitive | lineage2.2.1 | None | ERR072020 | Sensitive | lineage4.1.1.1 | gb | SRR26399183 | HR-TB | lineage2.2.1 | None | ERR2513824 | Sensitive | lineage4.1.1.1 | gb | ERR1023263 | Other | lineage6.1.3 | None | SRR20969769 | RR-TB | lineage2.2.1 | None | ERR6865467 | Sensitive | lineage4.3 | None | ERR072100 | Sensitive | lineage4.1.1.1 | None | ERR6362913 | MDR-TB | lineage4.1.1.1 | None | SRR6397523 | HR-TB | lineage4.1.1.1 | ca | ERR2514518 | Sensitive | lineage4.1.1.1 | gb | SRR6153102 | Sensitive | lineage2.2.1 | ca | SRR26112339 | Other | lineage4.1.1.1 | None | ERR4812402 | Sensitive | lineage4.1.1.1 | pe | SRR6397522 | HR-TB | lineage4.1.1.1 | ca | ERR9119758 | MDR-TB | lineage4.1.1.1 | None | SRR29098623 | Sensitive | lineage4.1.1.1 | None | ERR2653076 | MDR-TB | lineage4.1.1.1 | None | ERR2514972 | Sensitive | lineage4.1.1.1 | gb | ERR400558 | Sensitive | lineage4.1.1.1 | gb | ERR4811309 | MDR-TB | lineage2.2.1 | cn | ERR8975457 | MDR-TB | lineage4.1.1.1 | None | SRR29772469 | MDR-TB | lineage4.1.1.1 | None | SRR6398025 | HR-TB | lineage4.1.1.1 | ca | ERR2513560 | Sensitive | lineage4.1.1.1 | gb | SRR28393346 | MDR-TB | lineage4.1.1.1 | None | ERR4813934 | RR-TB | lineage4.1.1.1 | br | ERR4830280 | HR-TB | lineage2.2.1 | vn | ERR2653165 | MDR-TB | lineage4.1.1.1 | None | DRR184665 | Sensitive | lineage4.1.1.1 | vn | ERR4830186 | Sensitive | lineage2.2.1 | vn | ERR4799598 | Sensitive | lineage4.1.1.1 | in | ERR4813830 | Pre-XDR-TB | lineage4.1.1.1 | None | SRR6398102 | HR-TB | lineage4.1.1.1 | ca | ERR4830281 | Other | lineage4.1.1.1 | vn | SRR998742 | MDR-TB | lineage4.1.3;lineage6.3.1 | None | SRR26112264 | Sensitive | lineage4.6.2 | None | SRR2100344 | HR-TB | lineage4.1.1.1 | None | SRR6398032 | HR-TB | lineage4.1.1.1 | ca | SRR3647353 | MDR-TB | lineage4.2.2 | None | ERR8975902 | Sensitive | lineage4.3.2 | None | SRR29772740 | MDR-TB | lineage4.1.1.1 | None | ERR114477 | HR-TB | lineage4.1.1.1 | None | SRR26399213 | Sensitive | lineage2.2.1 | None | SRR6398114 | HR-TB | lineage4.1.1.1 | ca | ERR8975939 | Sensitive | lineage4.1.1.1 | None | SRR26399434 | Other | lineage4.1.2 | None | ERR2513722 | Sensitive | lineage4.1.1.1 | gb | ERR4025126 | Sensitive | lineage4.3 | None | SRR6397599 | Sensitive | lineage4.1.1.1 | ca | SRR2100297 | Sensitive | lineage3 | None | SRR12882673 | Sensitive | lineage1.1.2 | None | SRR6398033 | HR-TB | lineage4.1.1.1 | ca |
|---|
