lineage | Count |
---|---|
lineage2.2.1 | 24 |
lineage3.1.3 | 1 |
lineage3.1.2 | 2 |
lineage3 | 4 |
lineage4.3.4.1 | 2 |
lineage4.1.2.1 | 9 |
lineage4.3.4.2 | 7 |
La1.8.1 | 3 |
lineage4.4.1.2;lineage4.3.2 | 1 |
lineage4.5 | 2 |
lineage4.8 | 10 |
lineage2.2.1.1 | 4 |
lineage4.3.2 | 3 |
lineage2.2.2 | 1 |
lineage4.3.4.2.1 | 1 |
lineage4.2.2 | 1 |
lineage4.6.5 | 1 |
lineage4.4.2 | 1 |
lineage4.4.1.2 | 1 |
lineage4.1.1.3 | 1 |
lineage4.9 | 4 |
lineage4.1.2.1;lineage2.2.1 | 1 |
lineage1.1.2 | 5 |
lineage4.6.1.1 | 1 |
lineage4.6.2.2 | 3 |
lineage4.4.1.1 | 2 |
lineage4.1.3 | 1 |
lineage4.6 | 2 |
lineage4.3.1 | 1 |
lineage4.4.1.1.1 | 1 |
lineage4.1.2.1.1 | 1 |
lineage4 | 1 |
La1.7.1 | 1 |
lineage4.2.1 | 1 |
lineage4.3.3 | 4 |
lineage1.2.1.2.1 | 2 |
1 | |
lineage1.2.2.2 | 1 |
lineage4.7 | 1 |
spoligotype | Count |
---|---|
None | 113 |
ID | Drug resistance | Lineage | Country iso2 | SRR11567798 | Pre-XDR-TB | lineage2.2.1 | None | SRR11972279 | MDR-TB | lineage2.2.1 | None | SRR14088388 | HR-TB | lineage3.1.3 | None | SRR11972301 | RR-TB | lineage2.2.1 | None | SRR12882023 | Sensitive | lineage3.1.2 | None | SRR12882754 | Other | lineage3 | None | SRR13591400 | Sensitive | lineage4.3.4.1 | None | SRR13870402 | Pre-XDR-TB | lineage4.1.2.1 | None | SRR13870408 | Pre-XDR-TB | lineage4.3.4.2 | None | SRR12554454 | Other | La1.8.1 | None | SRR13591405 | Other | lineage3 | None | SRR15014702 | MDR-TB | lineage3.1.2 | None | SRR15399224 | HR-TB | lineage4.4.1.2;lineage4.3.2 | None | SRR15315983 | MDR-TB | lineage2.2.1 | None | SRR16058058 | MDR-TB | lineage4.5 | None | SRR15723100 | Pre-XDR-TB | lineage2.2.1 | None | SRR16058706 | Sensitive | lineage2.2.1 | None | SRR16058421 | Sensitive | lineage4.8 | None | SRR16058154 | Sensitive | lineage2.2.1.1 | None | SRR1792411 | Other | La1.8.1 | None | SRR16370320 | Sensitive | lineage4.1.2.1 | None | SRR16370349 | Other | lineage2.2.1 | None | SRR16115863 | Sensitive | lineage2.2.1 | None | SRR16370371 | Sensitive | lineage4.3.2 | None | SRR16370385 | HR-TB | lineage2.2.1 | None | SRR18591744 | MDR-TB | lineage2.2.2 | None | SRR21276917 | MDR-TB | lineage2.2.1 | None | SRR19428516 | Sensitive | lineage4.3.4.2.1 | None | SRR21277377 | Other | lineage2.2.1.1 | None | SRR21277172 | Sensitive | lineage2.2.1.1 | None | SRR21277332 | Other | lineage4.2.2 | None | SRR21675862 | Sensitive | lineage4.3.4.1 | None | SRR21658388 | Other | lineage4.6.5 | None | SRR21659032 | Other | lineage2.2.1 | None | SRR21657218 | Sensitive | lineage4.4.2 | None | SRR21658563 | Other | lineage4.1.2.1 | None | SRR21685255 | Sensitive | lineage4.4.1.2 | None | SRR21676526 | Other | lineage4.1.1.3 | None | ERR552922 | Sensitive | lineage4.8 | None | SRR21727566 | Sensitive | lineage2.2.1 | None | SRR22424905 | RR-TB | lineage4.9 | None | SRR21887773 | MDR-TB | lineage2.2.1 | None | SRR21727897 | Sensitive | lineage4.1.2.1 | None | SRR22424899 | RR-TB | lineage4.1.2.1 | None | SRR23691404 | Sensitive | lineage2.2.1 | None | SRR26800441 | Sensitive | lineage3 | None | ERR12544380 | HR-TB | lineage4.1.2.1;lineage2.2.1 | None | ERR12545823 | Sensitive | lineage4.8 | None | SRR28119747 | Sensitive | lineage2.2.1 | None | ERR2229547 | Sensitive | lineage4.8 | None | ERR4815624 | Sensitive | lineage1.1.2 | None | ERR4815537 | Sensitive | lineage4.9 | None | ERR4821793 | Sensitive | lineage4.9 | None | ERR4817710 | Other | lineage1.1.2 | None | ERR4820159 | Sensitive | lineage4.6.1.1 | None | ERR4816749 | Other | lineage1.1.2 | None | ERR4817883 | Sensitive | lineage4.8 | None | SRR5535836 | RR-TB | lineage4.6.2.2 | None | SRR6896410 | Sensitive | lineage2.2.1 | None | ERR4822215 | Sensitive | lineage3 | None | SRR6484966 | Other | lineage2.2.1 | None | ERR3063131 | Sensitive | lineage4.4.1.1 | None | ERR2660440 | HR-TB | lineage1.1.2 | None | ERR2679284 | MDR-TB | lineage4.1.3 | None | ERR4821526 | Other | lineage4.3.2 | None | ERR4829242 | Sensitive | lineage4.6 | None | ERR4830744 | RR-TB | lineage4.3.1 | None | SRR6856082 | Sensitive | lineage4.3.2 | None | SRR6855901 | Sensitive | lineage4.4.1.1.1 | None | SRR6848323 | Pre-XDR-TB | lineage4.1.2.1.1 | None | ERR10969185 | Sensitive | lineage4.3.4.2 | None | ERR3063116 | Sensitive | lineage4.4.1.1 | None | SRR9166038 | HR-TB | lineage4.9 | None | SRR8073666 | Other | La1.8.1 | None | SRR7131164 | Sensitive | lineage4.6 | None | SRR8866452 | Sensitive | lineage4.3.4.2 | None | ERR3639701 | MDR-TB | lineage4 | None | ERR4407544 | MDR-TB | lineage4.1.2.1 | None | ERR4195513 | HR-TB | lineage4.8 | None | ERR4195620 | HR-TB | lineage4.8 | None | ERR3801000 | Sensitive | lineage4.3.4.2 | None | ERR5864473 | Pre-XDR-TB | lineage2.2.1 | None | ERR4407553 | Sensitive | lineage4.6.2.2 | None | ERR4450957 | Other | La1.7.1 | None | ERR5863608 | MDR-TB | lineage2.2.1 | None | ERR5864617 | MDR-TB | lineage2.2.1 | None | ERR5865075 | MDR-TB | lineage2.2.1 | None | ERR5865169 | MDR-TB | lineage4.2.1 | None | ERR5865121 | MDR-TB | lineage2.2.1 | None | ERR5865152 | MDR-TB | lineage4.3.3 | None | ERR6336699 | MDR-TB | lineage1.2.1.2.1 | None | ERR5865960 | RR-TB | lineage4.1.2.1 | None | ERR6397181 | Sensitive | lineage4.1.2.1 | None | ERR6336756 | Sensitive | None | ERR6336785 | Sensitive | lineage1.2.1.2.1 | None | ERR7821214 | Sensitive | lineage1.2.2.2 | None | ERR7801125 | Sensitive | lineage2.2.1 | None | ERR7975686 | MDR-TB | lineage4.3.3 | None | ERR8774001 | Sensitive | lineage4.8 | None | ERR9121714 | Sensitive | lineage4.3.3 | None | ERR9121531 | HR-TB | lineage4.8 | None | ERR9121749 | HR-TB | lineage4.8 | None | ERR9125029 | Sensitive | lineage2.2.1 | None | ERR9786674 | Sensitive | lineage4.3.4.2 | None | ERR9125330 | MDR-TB | lineage4.5 | None | ERR9125569 | Sensitive | lineage2.2.1.1 | None | ERR9285873 | Sensitive | lineage4.3.4.2 | None | ERR9786374 | Other | lineage4.1.2.1 | None | ERR9125877 | Sensitive | lineage1.1.2 | None | ERR9786840 | Sensitive | lineage4.7 | None | ERR9786878 | Sensitive | lineage4.6.2.2 | None | SRR1002685 | HR-TB | lineage4.3.3 | None | ERR9786933 | Sensitive | lineage4.3.4.2 | None |
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