Rv3596c - c.1731T>C
Note: the variant has been searched for in a non-representative convenience
dataset of samples from the ENA. This sampleset may contain overrepresentation
in certain categories such as geographic source, drug resistance type and
lineage. Interpretation of variant frequencies should be performed cautiously
with this in mind.
Drug resistance types
286 Sensitive
28 RR-TB
193 HR-TB
91 MDR-TB
19 Pre-XDR-TB
4 XDR-TB
382 Other
lineage Counts
| lineage | Count |
|---|---|
| lineage4.9 | 350 |
| La1.6;La3;lineage4.6.4;lineage4.8.1;lineage4.9 | 1 |
| La3;M.canetti | 9 |
| La1.7;lineage4.2 | 1 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.8.2;lineage4.9;lineage7 | 1 |
| lineage2.1;lineage4.9;lineage6.3 | 8 |
| lineage4.9;lineage6.3 | 10 |
| lineage2.2.1.1 | 6 |
| lineage4.1.2.1 | 25 |
| lineage1.1.1;lineage4 | 1 |
| La1.2.BCG | 1 |
| M.canetti | 74 |
| M.canetti;lineage2.1;lineage4.9 | 26 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3 | 6 |
| 43 | |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9 | 3 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 4 |
| lineage2.2.1 | 56 |
| La1.7;lineage4.9 | 11 |
| La3;M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.9 | 8 |
| lineage4.1.1.3;lineage4.9 | 2 |
| La3;lineage4.9 | 19 |
| M.canetti;lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| lineage2.1;lineage4.9 | 20 |
| lineage4.3.3 | 6 |
| M.canetti;lineage4.6.4;lineage4.9 | 1 |
| lineage1.1.1 | 2 |
| lineage4.2;lineage4.9 | 3 |
| La3;lineage2.1;lineage4.9;lineage6.3 | 2 |
| lineage4.1;lineage4.9 | 2 |
| lineage4.5 | 2 |
| La1.6;La3;M.canetti;lineage4.8.1;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9 | 12 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.9 | 1 |
| lineage2.2.1;lineage4 | 2 |
| lineage2;lineage4.9 | 1 |
| La3;M.canetti;lineage2.1;lineage3.1 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage6.2;lineage6.3 | 1 |
| lineage2.1;lineage6.3 | 2 |
| La3;M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La3;lineage4.2;lineage4.6.3;lineage4.9;lineage9 | 2 |
| lineage4 | 8 |
| La1.8.1 | 8 |
| lineage4.8 | 19 |
| La2;lineage4.9 | 1 |
| La1.2 | 1 |
| lineage2.2.1;lineage4.9 | 1 |
| M.canetti;lineage4.2 | 1 |
| lineage3;lineage4.9 | 1 |
| La3;M.canetti;lineage3.1 | 1 |
| M.canetti;lineage2.1 | 1 |
| M.canetti;lineage2.1;lineage3 | 1 |
| lineage4.3.4.2.1 | 8 |
| lineage4.6.3;lineage4.9 | 3 |
| lineage1.2.2.2 | 1 |
| La1.7;M.canetti;lineage4.9 | 5 |
| M.canetti;lineage4.1.4;lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| La1;lineage4.9 | 4 |
| M.canetti;lineage2.2 | 3 |
| lineage4.3.2;lineage4.9 | 1 |
| lineage3.1.3 | 2 |
| M.canetti;lineage4.1.1.3;lineage6.3;lineage8 | 1 |
| La3;M.canetti;lineage2.1;lineage4.9;lineage6.3 | 5 |
| lineage3.1;lineage9 | 1 |
| La3;M.canetti;lineage4.8;lineage4.9 | 1 |
| La2;M.canetti | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9 | 2 |
| M.canetti;lineage4.2;lineage4.9 | 2 |
| lineage2.2.1.2 | 4 |
| lineage2.2.2 | 1 |
| lineage4.3.4 | 2 |
| La3;lineage4 | 1 |
| M.canetti;lineage2.1;lineage4 | 1 |
| La3;M.canetti;lineage2.2.1 | 1 |
| lineage2.1 | 4 |
| La1.7.X-unk4;lineage4.9 | 1 |
| lineage2.2 | 3 |
| La1.6;La3;M.canetti;lineage4.2.2 | 1 |
| La3;M.canetti;lineage4.9 | 2 |
| lineage4.3.1;lineage4.9;lineage6 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.2;lineage6.3 | 2 |
| La1.6;La3;lineage4.9 | 2 |
| M.canetti;lineage2.1;lineage4.3.1;lineage4.9 | 1 |
| lineage5.1.4 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.8.1;lineage4.9 | 4 |
| lineage4.8;lineage4.9 | 2 |
| lineage4.9;lineage7 | 2 |
| lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.7 | 2 |
| lineage4.2;lineage4.6.3;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage7 | 1 |
| La3;M.canetti;lineage2.1;lineage4.3.1;lineage4.9;lineage6.3 | 2 |
| lineage1;lineage4.9 | 2 |
| lineage4.9;lineage6.1.3 | 1 |
| La3;lineage4.1.2.1;lineage4.2.1;lineage4.5;lineage4.9;lineage6.1.1;lineage6.3.2 | 1 |
| La1.2.BCG;La1.8.1 | 1 |
| La1.7;lineage4.9;lineage6 | 1 |
| M.canetti;lineage4.2;lineage4.6.4;lineage4.8.1;lineage4.9;lineage6.2.3 | 1 |
| M.canetti;lineage2.1;lineage2.2.1;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;M.canetti;lineage4.6.4;lineage4.9 | 1 |
| lineage4.4.1.1.1 | 2 |
| La3;lineage2.1;lineage4.9 | 3 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.6.4;lineage4.9 | 1 |
| M.canetti;lineage4.9;lineage9 | 1 |
| lineage4.2;lineage4.6.3;lineage4.9.1 | 2 |
| M.canetti;lineage2.2.2;lineage6.2 | 2 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.9;lineage6.3 | 1 |
| La1.6;La3;lineage4.6.4;lineage4.9 | 1 |
| lineage1.1;lineage4 | 1 |
| La1.7 | 1 |
| lineage1.2.1.1 | 1 |
| lineage4.3.4.2 | 3 |
| lineage1.1 | 1 |
| lineage4.1.1.1 | 4 |
| lineage4.4.2 | 1 |
| lineage4.3.2.1 | 2 |
| lineage1.1.2 | 4 |
| lineage4.6.2.2 | 5 |
| lineage4.1.1.3 | 5 |
| lineage6.1.1 | 2 |
| lineage3 | 12 |
| lineage4.1.2 | 3 |
| lineage4.1.3 | 2 |
| La1.7.1;La1.7.X-unk4 | 1 |
| lineage4.3.2 | 1 |
| lineage1.1.3.2 | 1 |
| lineage4.9;lineage9 | 3 |
| M.canetti;lineage4.3.1;lineage4.9 | 1 |
| lineage4.6.1 | 1 |
| lineage4.1.2.1.1 | 1 |
| lineage6.1.3 | 2 |
| lineage3.1.1 | 1 |
| La3;lineage2.2.2 | 1 |
| lineage2.2.2;lineage4 | 1 |
| La1.6;La3;M.canetti;lineage2.1;lineage4.9 | 1 |
| La1.7.1;lineage4.9 | 1 |
| lineage4.1 | 2 |
| M.canetti;lineage4.2;lineage4.3;lineage4.6.4;lineage4.9 | 1 |
| lineage6.3.1 | 1 |
| M.canetti;lineage2.1;lineage4.1.2.1 | 1 |
| La2;lineage4.9;lineage9 | 1 |
| lineage4.3 | 1 |
| lineage6 | 1 |
| lineage3.1.2.1 | 1 |
| M.canetti;lineage2.1;lineage6.3 | 2 |
| La3 | 2 |
| lineage2.2.1;lineage3 | 1 |
| La1.7.1;M.canetti;lineage4.2;lineage4.9;lineage6.2;lineage6.3 | 1 |
| La1.7.1 | 2 |
| La1.6;La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.8.2;lineage4.9 | 1 |
| lineage4.6.3;lineage4.9;lineage6.3 | 1 |
| lineage4.2.2.2 | 1 |
| lineage3.1;lineage4.9 | 1 |
| lineage4.4.1.2 | 1 |
| La1.7;lineage3.1;lineage4 | 1 |
| lineage1.1;lineage4.1.3 | 1 |
| lineage4.1.1.2 | 1 |
| La3;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| La1;lineage2;lineage4.9 | 1 |
| lineage4.2;lineage4.8.1;lineage4.9 | 2 |
| lineage2.1;lineage4.3.2;lineage4.9 | 1 |
| La1.6;La3;M.canetti;lineage3;lineage4.2;lineage4.3.4;lineage4.9;lineage6.3 | 1 |
| lineage4.2.1 | 1 |
| lineage1.2.1.2.1 | 1 |
| lineage2.2.1;lineage3;lineage4 | 1 |
| lineage4.4.1.1 | 3 |
| lineage4.3.4.1 | 3 |
| lineage1.1.2;lineage4 | 1 |
| La1.7.1;La1.7.X-unk4;lineage7 | 1 |
| lineage4.8.1 | 2 |
| lineage2.1;lineage6.1.3;lineage6.2.3;lineage6.3 | 1 |
| lineage3.1 | 1 |
| La3;lineage2.2.1 | 1 |
| lineage2.2.1;lineage4.1.2.1 | 1 |
| M.canetti;lineage2.1;lineage4.1.4;lineage4.3.1;lineage4.9 | 1 |
| La3;M.canetti;lineage4.2;lineage4.6.4;lineage4.9;lineage6.3 | 1 |
| lineage4.9.1 | 1 |
| lineage3.1.2.2 | 1 |
| M.canetti;lineage1 | 1 |
| lineage2.1;lineage4.1.4;lineage4.9 | 1 |
| La1.6;M.canetti;lineage4.8.1;lineage4.9;lineage6.3 | 1 |
| lineage5.2 | 2 |
| lineage2.1;lineage4.9;lineage6.3;lineage8 | 1 |
| La3;M.canetti;lineage2;lineage4.2;lineage4.3 | 1 |
| lineage1.1.3.1 | 1 |
| lineage4.1.1;lineage4.9 | 1 |
spoligotype Counts
| spoligotype | Count |
|---|---|
| None | 1003 |
Geographic prevalence
Country level data for this variant is available for 0 isolates.
Statisctical support
Not enough data to calculate support.
Samples
This table has 1003 rows and could cause your browser to crash if rendered.
