lineage | Count |
---|---|
lineage2.2.1 | 39 |
lineage4.1.1 | 1 |
lineage4.2.2.2 | 2 |
lineage4.7 | 2 |
lineage3 | 9 |
lineage4.8 | 28 |
lineage4.2.1 | 47 |
lineage4.1.2.1 | 8 |
lineage4.3.3 | 8 |
lineage2.2.1.1 | 3 |
lineage3.1.2.1 | 1 |
lineage4.4.1.1 | 6 |
lineage3.1.2 | 1 |
lineage4.5 | 1 |
La1.2 | 2 |
lineage1.1.2 | 1 |
lineage4.1.1.1 | 1 |
lineage4.3.4.2 | 2 |
lineage2.2 | 71 |
lineage1.2.1.2.1 | 1 |
lineage4.3.4.1;lineage4.1.1 | 1 |
lineage4.3.2 | 1 |
lineage4.3.2.1 | 1 |
lineage4.2.1.1 | 4 |
lineage4 | 5 |
lineage4.3.3;lineage2.2.1 | 1 |
lineage4.1.2.1;lineage2.2 | 1 |
lineage4.1.2 | 1 |
lineage4.1 | 1 |
lineage4.2.1;lineage2.2.1 | 1 |
lineage4.9 | 1 |
spoligotype | Count |
---|---|
None | 252 |
ID | Drug resistance | Lineage | Country iso2 | ERR4830936 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830089 | MDR-TB | lineage2.2.1 | None | ERR4830131 | MDR-TB | lineage2.2.1 | None | ERR4830169 | Sensitive | lineage2.2.1 | None | ERR4831062 | Sensitive | lineage4.1.1 | np | ERR4830939 | Pre-XDR-TB | lineage2.2.1 | np | ERR2677447 | MDR-TB | lineage4.2.2.2 | de | ERR4829083 | Sensitive | lineage4.7 | it | ERR4831064 | Other | lineage3 | np | ERR4830901 | Pre-XDR-TB | lineage2.2.1 | np | ERR4822632 | Sensitive | lineage4.8 | None | ERR2677469 | MDR-TB | lineage2.2.1 | de | ERR4830937 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830133 | Sensitive | lineage2.2.1 | None | ERR4830932 | Pre-XDR-TB | lineage2.2.1 | np | ERR4822413 | Sensitive | lineage4.2.1 | ua | ERR4822626 | Sensitive | lineage4.8 | None | ERR4830144 | Other | lineage4.1.2.1 | None | ERR4822636 | Sensitive | lineage4.3.3 | None | ERR4829579 | HR-TB | lineage2.2.1 | it | ERR4830120 | MDR-TB | lineage2.2.1 | None | ERR4830918 | Pre-XDR-TB | lineage2.2.1 | np | ERR7911312 | MDR-TB | lineage2.2.1.1 | vn | ERR4797055 | Sensitive | lineage3 | in | ERR4822625 | Sensitive | lineage4.2.1 | None | ERR4830923 | Pre-XDR-TB | lineage2.2.1 | np | ERR7911306 | MDR-TB | lineage2.2.1.1 | vn | ERR4822410 | Other | lineage2.2.1 | ua | ERR4822376 | Pre-XDR-TB | lineage2.2.1 | kg | ERR4831074 | Sensitive | lineage3.1.2.1 | np | ERR7911442 | MDR-TB | lineage4.4.1.1 | za | ERR4797057 | Sensitive | lineage3.1.2 | in | ERR4831051 | MDR-TB | lineage4.8 | np | ERR4830155 | MDR-TB | lineage2.2.1 | None | ERR7911321 | MDR-TB | lineage2.2.1 | vn | ERR4830902 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830922 | Pre-XDR-TB | lineage3 | np | ERR4831061 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830146 | Pre-XDR-TB | lineage2.2.1 | None | ERR4830930 | Pre-XDR-TB | lineage2.2.1.1 | np | ERR4830147 | Sensitive | lineage4.5 | None | ERR4829185 | Other | La1.2 | it | ERR4831083 | Sensitive | lineage3 | np | ERR4830919 | Pre-XDR-TB | lineage2.2.1 | np | ERR4831079 | Sensitive | lineage3 | np | ERR4830078 | Sensitive | lineage2.2.1 | None | ERR4822391 | Pre-XDR-TB | lineage2.2.1 | kg | ERR4830914 | Pre-XDR-TB | lineage2.2.1 | np | ERR4829184 | Sensitive | lineage4.8 | it | ERR4831054 | Sensitive | lineage3 | np | ERR4830916 | Pre-XDR-TB | lineage2.2.1 | np | ERR2677467 | Pre-XDR-TB | lineage2.2.1 | de | ERR4830876 | MDR-TB | lineage4.4.1.1 | sz | ERR4830927 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830924 | Pre-XDR-TB | lineage2.2.1 | np | ERR4830926 | Pre-XDR-TB | lineage2.2.1 | np | ERR4831067 | Sensitive | lineage3 | np | ERR7911405 | MDR-TB | lineage2.2.1 | us | ERR4830938 | Pre-XDR-TB | lineage2.2.1 | np | ERR7911427 | MDR-TB | lineage2.2.1 | us | ERR4831091 | Sensitive | lineage3 | np | ERR2677417 | MDR-TB | lineage2.2.1 | de | ERR4796950 | Pre-XDR-TB | lineage2.2.1 | in | ERR7911438 | MDR-TB | lineage4.4.1.1 | za | ERR4830900 | Pre-XDR-TB | lineage2.2.1 | np | ERR4831086 | Sensitive | lineage1.1.2 | np | ERR4796930 | Pre-XDR-TB | lineage2.2.1 | in | ERR4831255 | RR-TB | lineage4.8 | de | ERR4797033 | Sensitive | lineage4.1.1.1 | in | ERR10969114 | HR-TB | lineage4.4.1.1 | None | ERR10969128 | RR-TB | lineage4.3.4.2 | None | ERR10969140 | Sensitive | lineage4.8 | None | ERR10969155 | Sensitive | lineage4.1.2.1 | None | ERR10969156 | Sensitive | lineage2.2 | None | ERR4797036 | Sensitive | lineage1.2.1.2.1 | in | ERR10969120 | Sensitive | lineage4.3.4.1;lineage4.1.1 | None | ERR10969157 | Sensitive | lineage4.3.2 | None | ERR10969213 | Sensitive | lineage4.3.2.1 | None | ERR10969163 | Sensitive | lineage2.2 | None | ERR7910959 | RR-TB | lineage4.1.2.1 | None | ERR10969220 | HR-TB | lineage4.3.4.2 | None | SRR16088003 | Sensitive | lineage4.8 | None | SRR16087925 | HR-TB | lineage2.2 | None | SRR16088131 | Sensitive | lineage2.2 | None | SRR16088101 | Sensitive | lineage4.1.2.1 | None | SRR16087944 | MDR-TB | lineage2.2 | None | SRR16088127 | Other | lineage4.2.1 | None | SRR16088133 | HR-TB | lineage4.2.1.1 | None | SRR16088138 | Sensitive | lineage4.8 | None | SRR16088129 | HR-TB | lineage4.3.3 | None | SRR16088136 | Sensitive | lineage4.2.1 | None | SRR16088135 | Sensitive | lineage4.8 | None | SRR16088140 | Sensitive | lineage2.2 | None | SRR16088150 | Sensitive | lineage2.2 | None | SRR16088148 | Other | lineage4.8 | None | SRR16088147 | Sensitive | lineage2.2 | None | SRR16088141 | HR-TB | lineage4 | None | SRR16088142 | HR-TB | lineage4.2.1 | None | SRR16088151 | HR-TB | lineage2.2 | None | SRR16088144 | Sensitive | lineage2.2 | None | SRR16088228 | Other | lineage4.8 | None | SRR16088222 | MDR-TB | lineage2.2 | None | SRR16088224 | Sensitive | lineage2.2 | None | SRR16088226 | HR-TB | lineage4.8 | None | SRR16088234 | HR-TB | lineage2.2 | None | SRR16088231 | Sensitive | lineage4.2.1.1 | None | SRR16088225 | HR-TB | lineage2.2 | None | SRR16088227 | Sensitive | lineage4.8 | None | SRR16088235 | HR-TB | lineage2.2 | None | SRR16088236 | Sensitive | lineage4.8 | None | SRR16088232 | HR-TB | lineage2.2 | None | SRR16088237 | Other | lineage4.3.3;lineage2.2.1 | None | SRR16088243 | Sensitive | lineage4.1.2.1 | None | SRR16088238 | Sensitive | lineage4.2.1 | None | SRR16088239 | Sensitive | lineage4 | None | SRR16088240 | MDR-TB | lineage4.1.2.1;lineage2.2 | None | SRR16088244 | Other | lineage4 | None | SRR16088255 | Sensitive | lineage4 | None | SRR16088247 | Sensitive | lineage4.2.1.1 | None | SRR16088245 | Sensitive | lineage4.8 | None | SRR16088248 | Sensitive | lineage4.2.1.1 | None | SRR16088253 | Sensitive | lineage4.8 | None | SRR16088265 | Sensitive | lineage4 | None | SRR16088256 | Sensitive | lineage4.1.2 | None | SRR16088258 | Sensitive | lineage4.8 | None | SRR16088266 | MDR-TB | lineage2.2 | None | SRR16088264 | Pre-XDR-TB | lineage2.2 | None | SRR16088433 | Other | lineage4.8 | None | SRR16088259 | Sensitive | lineage4.8 | None | SRR16088321 | Sensitive | lineage4.3.3 | None | SRR16088430 | Sensitive | lineage4.3.3 | None | SRR16088435 | Sensitive | lineage4.3.3 | None | SRR16088431 | Sensitive | lineage4.8 | None | SRR16088436 | HR-TB | lineage2.2 | None | SRR16088437 | Other | lineage2.2 | None | SRR16088434 | Sensitive | lineage4.8 | None | SRR16088438 | Sensitive | lineage2.2 | None | SRR16088439 | Sensitive | lineage4.8 | None | SRR16088445 | Other | lineage2.2 | None | SRR16088442 | Sensitive | lineage4.2.1 | None | SRR16088441 | Sensitive | lineage4.8 | None | SRR16088446 | HR-TB | lineage4.3.3 | None | SRR16088448 | HR-TB | lineage2.2 | None | SRR16088449 | Sensitive | lineage4.2.1 | None | SRR16088451 | Sensitive | lineage4.3.3 | None | SRR16088453 | Sensitive | lineage4.1.2.1 | None | SRR16088450 | Sensitive | lineage4.8 | None | SRR16088452 | Other | lineage2.2 | None | SRR16088464 | MDR-TB | lineage2.2 | None | SRR16088447 | Sensitive | lineage4.8 | None | SRR18714918 | MDR-TB | lineage2.2 | None | SRR16088539 | Sensitive | lineage2.2 | None | SRR23310825 | MDR-TB | lineage2.2 | None | SRR23310822 | Sensitive | lineage2.2 | None | SRR19304122 | Sensitive | lineage4.2.2.2 | None | SRR23086729 | Pre-XDR-TB | lineage4.8 | None | SRR23310831 | MDR-TB | lineage2.2 | None | SRR23310834 | MDR-TB | lineage2.2 | None | SRR23310864 | MDR-TB | lineage2.2 | None | SRR23310847 | MDR-TB | lineage2.2 | None | SRR23310845 | MDR-TB | lineage2.2 | None | SRR23310870 | MDR-TB | lineage2.2 | None | SRR23310871 | MDR-TB | lineage2.2 | None | SRR23310904 | MDR-TB | lineage4.2.1 | None | SRR23310896 | MDR-TB | lineage2.2 | None | SRR23310885 | MDR-TB | lineage2.2 | None | SRR23310897 | MDR-TB | lineage4.2.1 | None | SRR23310920 | MDR-TB | lineage2.2 | None | SRR23310898 | MDR-TB | lineage2.2 | None | SRR23310922 | Pre-XDR-TB | lineage2.2 | None | SRR23310921 | MDR-TB | lineage2.2 | None | SRR23310929 | MDR-TB | lineage2.2 | None | SRR23310924 | Pre-XDR-TB | lineage4.2.1 | None | SRR23310930 | Pre-XDR-TB | lineage4.2.1 | None | SRR23310925 | MDR-TB | lineage4.2.1 | None | SRR23310932 | XDR-TB | lineage4.2.1 | None | SRR23310927 | Pre-XDR-TB | lineage2.2 | None | SRR23310931 | Pre-XDR-TB | lineage4.2.1 | None | SRR23310933 | MDR-TB | lineage4.2.1 | None | SRR23310934 | MDR-TB | lineage2.2 | None | SRR23310938 | MDR-TB | lineage4.2.1 | None | SRR23310936 | Pre-XDR-TB | lineage2.2 | None | SRR23310941 | MDR-TB | lineage2.2 | None | SRR23310939 | Pre-XDR-TB | lineage4.3.3 | None | SRR23310943 | Pre-XDR-TB | lineage4.2.1 | None | SRR23310937 | MDR-TB | lineage2.2 | None | SRR23310940 | MDR-TB | lineage4.2.1 | None | SRR23310942 | Pre-XDR-TB | lineage4.2.1 | None | SRR23310946 | Sensitive | lineage2.2 | None | SRR23310948 | MDR-TB | lineage4.2.1 | None | SRR23310947 | MDR-TB | lineage4.2.1 | None | SRR23310965 | MDR-TB | lineage4.2.1 | None | SRR23310949 | MDR-TB | lineage4.2.1 | None | SRR23310961 | Sensitive | lineage4.1 | None | SRR23310962 | Sensitive | lineage4.8 | None | SRR23310963 | Sensitive | lineage4.8 | None | SRR23310966 | Sensitive | lineage2.2 | None | SRR23310981 | MDR-TB | lineage4.2.1 | None | SRR23310976 | MDR-TB | lineage2.2 | None | SRR23310986 | MDR-TB | lineage2.2 | None | SRR23310995 | Pre-XDR-TB | lineage2.2 | None | SRR23310984 | MDR-TB | lineage4.2.1;lineage2.2.1 | None | SRR23310985 | MDR-TB | lineage4.2.1 | None | SRR23310989 | MDR-TB | lineage2.2 | None | SRR23310979 | MDR-TB | lineage2.2 | None | SRR23310980 | MDR-TB | lineage4.2.1 | None | SRR23310990 | Sensitive | lineage2.2 | None | SRR23310993 | Pre-XDR-TB | lineage4.2.1 | None | SRR23310997 | MDR-TB | lineage4.2.1 | None | SRR23310994 | MDR-TB | lineage4.2.1 | None | SRR23310998 | MDR-TB | lineage4.2.1 | None | SRR23310996 | HR-TB | lineage4.1.2.1 | None | SRR23310999 | MDR-TB | lineage4.2.1 | None | SRR23311000 | MDR-TB | lineage2.2 | None | SRR23311007 | MDR-TB | lineage4.2.1 | None | SRR23311002 | MDR-TB | lineage4.2.1 | None | SRR23311004 | MDR-TB | lineage4.2.1 | None | SRR23311006 | MDR-TB | lineage2.2 | None | SRR23311009 | MDR-TB | lineage2.2 | None | SRR23311010 | MDR-TB | lineage4.2.1 | None | SRR23311012 | MDR-TB | lineage4.2.1 | None | SRR23311015 | MDR-TB | lineage4.2.1 | None | SRR23311016 | MDR-TB | lineage2.2 | None | SRR23311001 | Pre-XDR-TB | lineage2.2 | None | SRR23311003 | MDR-TB | lineage4.2.1 | None | SRR23311005 | MDR-TB | lineage2.2 | None | SRR23311011 | Pre-XDR-TB | lineage4.2.1 | None | SRR23311013 | MDR-TB | lineage4.2.1 | None | SRR23311014 | MDR-TB | lineage4.2.1 | None | SRR23311018 | Pre-XDR-TB | lineage2.2 | None | SRR23311019 | Pre-XDR-TB | lineage2.2 | None | SRR23311017 | Sensitive | lineage4.7 | None | SRR23311021 | MDR-TB | lineage4.2.1 | None | SRR23311026 | MDR-TB | lineage2.2 | None | SRR23311023 | MDR-TB | lineage4.2.1 | None | SRR23311022 | MDR-TB | lineage2.2 | None | SRR23311024 | MDR-TB | lineage4.2.1 | None | SRR23311025 | MDR-TB | lineage2.2 | None | SRR23311027 | MDR-TB | lineage2.2 | None | SRR23311029 | MDR-TB | lineage4.2.1 | None | SRR23311028 | Sensitive | lineage2.2 | None | SRR23311050 | MDR-TB | lineage2.2 | None | SRR23311039 | HR-TB | lineage2.2 | None | ERR4822620 | Sensitive | lineage4.9 | None | SRR23311062 | MDR-TB | lineage4.2.1 | None | ERR7911437 | MDR-TB | lineage4.4.1.1 | za | ERR4831088 | Sensitive | lineage4.4.1.1 | np | ERR4830913 | Pre-XDR-TB | lineage2.2.1 | np | ERR4829629 | Other | La1.2 | it | ERR4797025 | Pre-XDR-TB | lineage3 | in | ERR4830925 | Pre-XDR-TB | lineage2.2.1 | np | ERR4822421 | Sensitive | lineage4.1.2.1 | None |
---|